Gvermi7070.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi7070.t1
Unique NameGvermi7070.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length225
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24229contigScGOVlb_24229:1444986..1445660 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog555500.I215_12018
PFAMsNAD_binding_10
Max annot lvl976|Bacteroidetes
Evalue5.99e-14
EggNOG OGsCOG0702@1|root,COG0702@2|Bacteria,4NMI5@976|Bacteroidetes
Descriptionepimerase
COG categoryGM
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi7070Gvermi7070Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_24229 1444986..1445660 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7070.t1.stop1Gvermi7070.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_24229 1444986..1444988 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7070.t1.CDS1Gvermi7070.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24229 1444986..1445660 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7070.t1.exon1Gvermi7070.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24229 1444986..1445660 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7070.t1.start1Gvermi7070.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_24229 1445658..1445660 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7070.t1Gvermi7070.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_24229 1444986..1445660 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi7070.t1 ID=Gvermi7070.t1|Name=Gvermi7070.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=225bp
MTPSILIIGATGRTGQCLIQAASAREPAPHIHAFARNPDSLPPPLTAKCA
SVQKGDALKCEDVHAALVASKATHLAVAIGERDDLSETTLRTDSAKAITE
AIDKVGTDIKVVVVSSLGAGGTSIKVGFGIGMLVGHMLRNVLKDHNGQEQ
CFNNAFENKKNSLLIVRPTSLQEGHGGQELVTFDGQKKAPSGKTDRQDLA
EWIIAQICNGGEQFGHSVNITRKP*
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spliced messenger RNA

>Gvermi7070.t1 ID=Gvermi7070.t1|Name=Gvermi7070.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=675bp|location=Sequence derived from alignment at ScGOVlb_24229:1444986..1445660- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACCCCCTCAATCCTCATCATCGGCGCCACCGGACGCACCGGACAGTG
TCTCATCCAAGCCGCGTCGGCCCGCGAACCCGCGCCGCACATCCACGCCT
TTGCGCGCAACCCCGACTCACTACCCCCGCCCCTCACGGCCAAATGCGCG
TCGGTACAGAAGGGGGACGCGCTTAAATGCGAAGATGTACACGCGGCGCT
TGTCGCTTCCAAAGCAACTCATCTCGCCGTGGCCATTGGAGAGCGTGACG
ATCTATCTGAGACCACTCTGCGCACCGATTCCGCGAAGGCCATCACCGAG
GCGATTGACAAGGTCGGCACTGACATCAAAGTTGTCGTCGTGTCCAGTCT
TGGCGCGGGCGGTACTAGCATCAAGGTCGGCTTTGGGATCGGGATGCTTG
TGGGTCATATGCTGCGAAATGTGCTCAAAGATCATAATGGACAAGAGCAA
TGCTTCAACAACGCATTCGAGAACAAGAAGAATAGTTTGTTGATTGTGAG
ACCGACCAGTCTTCAGGAAGGACATGGTGGTCAGGAACTAGTAACGTTTG
ACGGCCAGAAGAAGGCGCCGAGCGGAAAGACCGATAGACAAGACCTTGCC
GAATGGATCATCGCTCAGATATGCAACGGCGGTGAACAGTTCGGGCATTC
CGTTAATATCACTCGGAAGCCGTAA
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protein sequence of Gvermi7070.t1

>Gvermi7070.t1 ID=Gvermi7070.t1|Name=Gvermi7070.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=225bp
MTPSILIIGATGRTGQCLIQAASAREPAPHIHAFARNPDSLPPPLTAKCA
SVQKGDALKCEDVHAALVASKATHLAVAIGERDDLSETTLRTDSAKAITE
AIDKVGTDIKVVVVSSLGAGGTSIKVGFGIGMLVGHMLRNVLKDHNGQEQ
CFNNAFENKKNSLLIVRPTSLQEGHGGQELVTFDGQKKAPSGKTDRQDLA
EWIIAQICNGGEQFGHSVNITRKP*
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mRNA from alignment at ScGOVlb_24229:1444986..1445660-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi7070.t1 ID=Gvermi7070.t1|Name=Gvermi7070.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=675bp|location=Sequence derived from alignment at ScGOVlb_24229:1444986..1445660- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGACCCCCTCAATCCTCATCATCGGCGCCACCGGACGCACCGGACAGTG
TCTCATCCAAGCCGCGTCGGCCCGCGAACCCGCGCCGCACATCCACGCCT
TTGCGCGCAACCCCGACTCACTACCCCCGCCCCTCACGGCCAAATGCGCG
TCGGTACAGAAGGGGGACGCGCTTAAATGCGAAGATGTACACGCGGCGCT
TGTCGCTTCCAAAGCAACTCATCTCGCCGTGGCCATTGGAGAGCGTGACG
ATCTATCTGAGACCACTCTGCGCACCGATTCCGCGAAGGCCATCACCGAG
GCGATTGACAAGGTCGGCACTGACATCAAAGTTGTCGTCGTGTCCAGTCT
TGGCGCGGGCGGTACTAGCATCAAGGTCGGCTTTGGGATCGGGATGCTTG
TGGGTCATATGCTGCGAAATGTGCTCAAAGATCATAATGGACAAGAGCAA
TGCTTCAACAACGCATTCGAGAACAAGAAGAATAGTTTGTTGATTGTGAG
ACCGACCAGTCTTCAGGAAGGACATGGTGGTCAGGAACTAGTAACGTTTG
ACGGCCAGAAGAAGGCGCCGAGCGGAAAGACCGATAGACAAGACCTTGCC
GAATGGATCATCGCTCAGATATGCAACGGCGGTGAACAGTTCGGGCATTC
CGTTAATATCACTCGGAAGCCGTAA
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Coding sequence (CDS) from alignment at ScGOVlb_24229:1444986..1445660-

>Gvermi7070.t1 ID=Gvermi7070.t1|Name=Gvermi7070.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=675bp|location=Sequence derived from alignment at ScGOVlb_24229:1444986..1445660- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGACCCCCTCAATCCTCATCATCGGCGCCACCGGACGCACCGGACAGTG
TCTCATCCAAGCCGCGTCGGCCCGCGAACCCGCGCCGCACATCCACGCCT
TTGCGCGCAACCCCGACTCACTACCCCCGCCCCTCACGGCCAAATGCGCG
TCGGTACAGAAGGGGGACGCGCTTAAATGCGAAGATGTACACGCGGCGCT
TGTCGCTTCCAAAGCAACTCATCTCGCCGTGGCCATTGGAGAGCGTGACG
ATCTATCTGAGACCACTCTGCGCACCGATTCCGCGAAGGCCATCACCGAG
GCGATTGACAAGGTCGGCACTGACATCAAAGTTGTCGTCGTGTCCAGTCT
TGGCGCGGGCGGTACTAGCATCAAGGTCGGCTTTGGGATCGGGATGCTTG
TGGGTCATATGCTGCGAAATGTGCTCAAAGATCATAATGGACAAGAGCAA
TGCTTCAACAACGCATTCGAGAACAAGAAGAATAGTTTGTTGATTGTGAG
ACCGACCAGTCTTCAGGAAGGACATGGTGGTCAGGAACTAGTAACGTTTG
ACGGCCAGAAGAAGGCGCCGAGCGGAAAGACCGATAGACAAGACCTTGCC
GAATGGATCATCGCTCAGATATGCAACGGCGGTGAACAGTTCGGGCATTC
CGTTAATATCACTCGGAAGCCGTAA
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