Gvermi7056.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi7056.t1
Unique NameGvermi7056.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length254
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24229contigScGOVlb_24229:1329637..1330398 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005705573.1
Preferred nameRPL8
PFAMsRibosomal_L2,Ribosomal_L2_C
Max annot lvl2759|Eukaryota
KEGG koko:K02938
KEGG Pathwayko03010,map03010
KEGG ModuleM00177
GOsGO:0002181,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0019538,GO:0019843,GO:0022625,GO:0022626,GO:0030684,GO:0030687,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904
Evalue3.87e-145
EggNOG OGsCOG0090@1|root,KOG2309@2759|Eukaryota
Descriptionstructural constituent of ribosome
COG categoryJ
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi7056Gvermi7056Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_24229 1329637..1330398 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7056.t1.start1Gvermi7056.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_24229 1329637..1329639 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7056.t1.CDS1Gvermi7056.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24229 1329637..1330398 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7056.t1.exon1Gvermi7056.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24229 1329637..1330398 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7056.t1.stop1Gvermi7056.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_24229 1330396..1330398 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7056.t1Gvermi7056.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_24229 1329637..1330398 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi7056.t1 ID=Gvermi7056.t1|Name=Gvermi7056.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=254bp
MGRVIRGQRKGAGGIFKSHTSKRKGAAKLRALDYSERHGYIRGTVKDIIH
DPGRGAPLAKVVFRDRVRYRKNAELFIAAEGMYTGQFLYCGRKANLSIGN
VMPLSEMPEGTIVCNVEAKNGDRGKLARASGDYVTVIGHLEANKTRIRLP
SGSRKIVPSTCRAMVGIVAGGGRTDKPMLKAGTAYHKYRVKRNSWPKVRG
VAMNPVEHPHGGGNHQHVGHPTTVRRDAPAGKKVGLIAARRTGRIRGGKP
SKE*
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spliced messenger RNA

>Gvermi7056.t1 ID=Gvermi7056.t1|Name=Gvermi7056.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=762bp|location=Sequence derived from alignment at ScGOVlb_24229:1329637..1330398+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGCAGAGTGATCCGCGGCCAGAGAAAGGGCGCCGGCGGCATCTTCAA
GTCGCACACGTCCAAGCGCAAGGGCGCCGCCAAGCTGCGCGCCCTCGACT
ACTCGGAGCGCCACGGCTACATCCGCGGCACCGTCAAGGACATCATCCAC
GACCCCGGCCGCGGCGCCCCGCTCGCCAAGGTCGTCTTCCGCGACCGCGT
GCGCTACCGCAAGAACGCAGAGCTCTTCATCGCCGCCGAGGGCATGTACA
CCGGCCAGTTCCTCTACTGCGGCCGCAAGGCCAACCTCTCCATCGGCAAC
GTCATGCCGCTCTCCGAGATGCCCGAGGGCACCATCGTGTGCAACGTCGA
GGCCAAGAACGGCGATCGCGGCAAGCTCGCCCGCGCCAGCGGCGACTACG
TCACCGTCATCGGCCACCTGGAAGCAAACAAGACCCGCATCCGCCTCCCC
TCCGGATCGCGCAAGATCGTCCCCAGCACCTGCCGCGCCATGGTCGGCAT
TGTTGCGGGCGGCGGAAGAACCGACAAGCCCATGCTCAAGGCCGGCACCG
CCTACCACAAGTACCGCGTCAAGCGCAACTCGTGGCCCAAGGTCAGAGGT
GTCGCCATGAACCCGGTTGAGCATCCCCACGGCGGTGGAAACCATCAGCA
CGTGGGACATCCCACCACAGTCCGTCGTGACGCACCAGCTGGTAAGAAGG
TCGGCCTCATTGCTGCGCGCCGCACAGGTCGTATTCGCGGTGGTAAGCCC
TCCAAGGAGTAG
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protein sequence of Gvermi7056.t1

>Gvermi7056.t1 ID=Gvermi7056.t1|Name=Gvermi7056.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=254bp
MGRVIRGQRKGAGGIFKSHTSKRKGAAKLRALDYSERHGYIRGTVKDIIH
DPGRGAPLAKVVFRDRVRYRKNAELFIAAEGMYTGQFLYCGRKANLSIGN
VMPLSEMPEGTIVCNVEAKNGDRGKLARASGDYVTVIGHLEANKTRIRLP
SGSRKIVPSTCRAMVGIVAGGGRTDKPMLKAGTAYHKYRVKRNSWPKVRG
VAMNPVEHPHGGGNHQHVGHPTTVRRDAPAGKKVGLIAARRTGRIRGGKP
SKE*
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mRNA from alignment at ScGOVlb_24229:1329637..1330398+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi7056.t1 ID=Gvermi7056.t1|Name=Gvermi7056.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=762bp|location=Sequence derived from alignment at ScGOVlb_24229:1329637..1330398+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGGCAGAGTGATCCGCGGCCAGAGAAAGGGCGCCGGCGGCATCTTCAA
GTCGCACACGTCCAAGCGCAAGGGCGCCGCCAAGCTGCGCGCCCTCGACT
ACTCGGAGCGCCACGGCTACATCCGCGGCACCGTCAAGGACATCATCCAC
GACCCCGGCCGCGGCGCCCCGCTCGCCAAGGTCGTCTTCCGCGACCGCGT
GCGCTACCGCAAGAACGCAGAGCTCTTCATCGCCGCCGAGGGCATGTACA
CCGGCCAGTTCCTCTACTGCGGCCGCAAGGCCAACCTCTCCATCGGCAAC
GTCATGCCGCTCTCCGAGATGCCCGAGGGCACCATCGTGTGCAACGTCGA
GGCCAAGAACGGCGATCGCGGCAAGCTCGCCCGCGCCAGCGGCGACTACG
TCACCGTCATCGGCCACCTGGAAGCAAACAAGACCCGCATCCGCCTCCCC
TCCGGATCGCGCAAGATCGTCCCCAGCACCTGCCGCGCCATGGTCGGCAT
TGTTGCGGGCGGCGGAAGAACCGACAAGCCCATGCTCAAGGCCGGCACCG
CCTACCACAAGTACCGCGTCAAGCGCAACTCGTGGCCCAAGGTCAGAGGT
GTCGCCATGAACCCGGTTGAGCATCCCCACGGCGGTGGAAACCATCAGCA
CGTGGGACATCCCACCACAGTCCGTCGTGACGCACCAGCTGGTAAGAAGG
TCGGCCTCATTGCTGCGCGCCGCACAGGTCGTATTCGCGGTGGTAAGCCC
TCCAAGGAGTAG
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Coding sequence (CDS) from alignment at ScGOVlb_24229:1329637..1330398+

>Gvermi7056.t1 ID=Gvermi7056.t1|Name=Gvermi7056.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=762bp|location=Sequence derived from alignment at ScGOVlb_24229:1329637..1330398+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGGCAGAGTGATCCGCGGCCAGAGAAAGGGCGCCGGCGGCATCTTCAA
GTCGCACACGTCCAAGCGCAAGGGCGCCGCCAAGCTGCGCGCCCTCGACT
ACTCGGAGCGCCACGGCTACATCCGCGGCACCGTCAAGGACATCATCCAC
GACCCCGGCCGCGGCGCCCCGCTCGCCAAGGTCGTCTTCCGCGACCGCGT
GCGCTACCGCAAGAACGCAGAGCTCTTCATCGCCGCCGAGGGCATGTACA
CCGGCCAGTTCCTCTACTGCGGCCGCAAGGCCAACCTCTCCATCGGCAAC
GTCATGCCGCTCTCCGAGATGCCCGAGGGCACCATCGTGTGCAACGTCGA
GGCCAAGAACGGCGATCGCGGCAAGCTCGCCCGCGCCAGCGGCGACTACG
TCACCGTCATCGGCCACCTGGAAGCAAACAAGACCCGCATCCGCCTCCCC
TCCGGATCGCGCAAGATCGTCCCCAGCACCTGCCGCGCCATGGTCGGCAT
TGTTGCGGGCGGCGGAAGAACCGACAAGCCCATGCTCAAGGCCGGCACCG
CCTACCACAAGTACCGCGTCAAGCGCAACTCGTGGCCCAAGGTCAGAGGT
GTCGCCATGAACCCGGTTGAGCATCCCCACGGCGGTGGAAACCATCAGCA
CGTGGGACATCCCACCACAGTCCGTCGTGACGCACCAGCTGGTAAGAAGG
TCGGCCTCATTGCTGCGCGCCGCACAGGTCGTATTCGCGGTGGTAAGCCC
TCCAAGGAGTAG
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