Gvermi7030.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi7030.t1
Unique Name	Gvermi7030.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	561

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_24229	contig	ScGOVlb_24229:1031533..1033215 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	45157.CMI048CT
PFAMs	Glyco_transf_90
Max annot lvl	2759\|Eukaryota
Evalue	1.66e-73
EggNOG OGs	KOG2458@1\|root,KOG2458@2759\|Eukaryota
Description	glucosyltransferase activity
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi7030	Gvermi7030	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_24229 1031533..1033215 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi7030.t1.start1	Gvermi7030.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_24229 1031533..1031535 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi7030.t1.CDS1	Gvermi7030.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_24229 1031533..1033215 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi7030.t1.exon1	Gvermi7030.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_24229 1031533..1033215 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi7030.t1.stop1	Gvermi7030.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_24229 1033213..1033215 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi7030.t1	Gvermi7030.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_24229 1031533..1033215 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_24229:1031533..1033215+
coding sequence from alignment at ScGOVlb_24229:1031533..1033215+

mRNA sequence

>Gvermi7030.t1 ID=Gvermi7030.t1|Name=Gvermi7030.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=561bp
MVCDPGKRREGWLQTIILTSIILFCIIATSRSITNPSSKPSFPPQINYSL
EHLFPSSFVPVYEIFNSSQAQKLDSGSLIDHEKQDVRIGDLYRPKIPKTL
PLLCSGPPRYSNSLLDYGAPPVTSRAAIELAFESLVAKYLAPWIPLSQGT
ESSPLLQRPITQKLLNSMEVLIRGGAFRVRLAGDGKVRYRVLEHWSQTYR
ISRMIWTLNLLQEALATYPDLAKIRCEFYVNVADSPRSTVDSMSRDMGGI
PVFSFRTSTSYLDVPVPDPVEYGSNGNYVWNTEEKLPYEYRIPKLVFRGS
SSSLQEYHDHNWLSVPRIRLAALAKQHPELIDAGITKWMKLGKNTSVDEV
ESSLGTGLTDVLNYENQGRYQFIIDIDGGLGSSRKRGILTSGAVPFFQKS
NWYMWYEPLLKPFYHFLPVDTYLQDLLERVYAAKADPQGSKRIIDSAGCF
GKEVISKKAAMLYWRVLLKRYSQLQHDPASGDEEVTPSMCALRPATAEGP
MGCSDGWYMFNGTVPFGCRYTGAKRHPYQLECWRNIGRGTEFKFTSDAVH
SHYNDGKEST*

spliced messenger RNA

>Gvermi7030.t1 ID=Gvermi7030.t1|Name=Gvermi7030.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1683bp|location=Sequence derived from alignment at ScGOVlb_24229:1031533..1033215+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTTTGCGATCCCGGAAAAAGGAGGGAGGGGTGGCTGCAAACGATTAT
TCTGACGAGCATAATCCTCTTTTGCATAATTGCCACCAGCAGATCCATAA
CCAATCCATCATCAAAACCATCGTTTCCCCCGCAAATCAATTATTCCCTG
GAGCATCTCTTTCCCAGCTCGTTTGTTCCAGTCTATGAAATTTTTAACAG
CTCTCAGGCACAGAAGCTGGATTCAGGAAGTTTAATTGATCACGAGAAAC
AGGATGTCCGAATCGGCGACTTGTATCGTCCGAAAATACCGAAAACACTA
CCGTTGTTGTGTTCCGGACCCCCTCGCTACTCGAATAGTCTATTGGACTA
TGGGGCTCCCCCGGTCACGTCTCGAGCCGCAATTGAGTTAGCTTTTGAGA
GTCTGGTGGCTAAATATCTCGCACCGTGGATCCCACTTTCTCAAGGGACC
GAGAGCTCTCCTTTGCTGCAGAGACCAATAACTCAAAAGCTGTTGAACTC
AATGGAAGTTCTTATTCGAGGCGGGGCATTTAGAGTTCGCCTTGCGGGCG
ACGGCAAGGTGCGGTACAGGGTTTTGGAGCACTGGAGCCAAACGTATCGA
ATAAGTCGCATGATATGGACTCTTAACTTGCTACAAGAGGCTCTCGCGAC
ATACCCAGACCTTGCAAAGATCAGATGCGAATTTTATGTGAACGTCGCCG
ATTCTCCTCGATCCACCGTAGATTCTATGTCGAGAGATATGGGTGGCATC
CCCGTTTTCTCTTTCCGCACTTCCACGTCATACCTTGATGTTCCTGTCCC
AGACCCAGTGGAATACGGTTCAAACGGAAACTATGTGTGGAACACTGAAG
AGAAATTGCCATATGAATATCGCATCCCCAAACTGGTGTTTCGTGGGAGT
TCAAGTTCACTTCAAGAATATCATGATCACAATTGGCTCTCCGTGCCTCG
CATTCGCCTAGCCGCTCTTGCCAAGCAACATCCAGAACTCATCGATGCCG
GGATCACGAAGTGGATGAAATTAGGGAAGAATACTTCTGTGGACGAGGTT
GAGTCATCATTAGGTACGGGTCTGACGGATGTTCTGAACTATGAAAACCA
GGGAAGATATCAATTCATCATCGATATTGACGGAGGCTTAGGGAGCAGTA
GAAAACGAGGGATTCTTACCAGTGGCGCGGTGCCGTTCTTTCAGAAATCG
AATTGGTATATGTGGTACGAGCCCTTGCTGAAGCCGTTCTACCACTTTTT
ACCAGTCGATACATATCTACAAGACCTTTTGGAACGAGTTTACGCCGCCA
AGGCGGATCCCCAAGGCTCCAAAAGAATCATTGACAGTGCTGGCTGCTTT
GGCAAGGAAGTGATTTCGAAGAAAGCTGCGATGCTGTATTGGAGAGTTCT
TCTTAAACGATACAGTCAATTGCAACATGATCCCGCATCAGGTGACGAAG
AAGTTACACCATCGATGTGTGCATTGCGACCTGCGACAGCAGAAGGACCG
ATGGGGTGCTCTGATGGATGGTATATGTTCAATGGCACTGTGCCATTTGG
ATGTAGATATACTGGGGCAAAGCGTCACCCATACCAACTAGAGTGCTGGA
GAAACATAGGCAGAGGTACAGAATTCAAATTCACGAGCGATGCCGTGCAC
AGTCACTACAACGATGGAAAAGAGTCTACATAG

protein sequence of Gvermi7030.t1

>Gvermi7030.t1 ID=Gvermi7030.t1|Name=Gvermi7030.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=561bp
MVCDPGKRREGWLQTIILTSIILFCIIATSRSITNPSSKPSFPPQINYSL
EHLFPSSFVPVYEIFNSSQAQKLDSGSLIDHEKQDVRIGDLYRPKIPKTL
PLLCSGPPRYSNSLLDYGAPPVTSRAAIELAFESLVAKYLAPWIPLSQGT
ESSPLLQRPITQKLLNSMEVLIRGGAFRVRLAGDGKVRYRVLEHWSQTYR
ISRMIWTLNLLQEALATYPDLAKIRCEFYVNVADSPRSTVDSMSRDMGGI
PVFSFRTSTSYLDVPVPDPVEYGSNGNYVWNTEEKLPYEYRIPKLVFRGS
SSSLQEYHDHNWLSVPRIRLAALAKQHPELIDAGITKWMKLGKNTSVDEV
ESSLGTGLTDVLNYENQGRYQFIIDIDGGLGSSRKRGILTSGAVPFFQKS
NWYMWYEPLLKPFYHFLPVDTYLQDLLERVYAAKADPQGSKRIIDSAGCF
GKEVISKKAAMLYWRVLLKRYSQLQHDPASGDEEVTPSMCALRPATAEGP
MGCSDGWYMFNGTVPFGCRYTGAKRHPYQLECWRNIGRGTEFKFTSDAVH
SHYNDGKEST*

mRNA from alignment at ScGOVlb_24229:1031533..1033215+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi7030.t1 ID=Gvermi7030.t1|Name=Gvermi7030.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1683bp|location=Sequence derived from alignment at ScGOVlb_24229:1031533..1033215+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGTTTGCGATCCCGGAAAAAGGAGGGAGGGGTGGCTGCAAACGATTAT
TCTGACGAGCATAATCCTCTTTTGCATAATTGCCACCAGCAGATCCATAA
CCAATCCATCATCAAAACCATCGTTTCCCCCGCAAATCAATTATTCCCTG
GAGCATCTCTTTCCCAGCTCGTTTGTTCCAGTCTATGAAATTTTTAACAG
CTCTCAGGCACAGAAGCTGGATTCAGGAAGTTTAATTGATCACGAGAAAC
AGGATGTCCGAATCGGCGACTTGTATCGTCCGAAAATACCGAAAACACTA
CCGTTGTTGTGTTCCGGACCCCCTCGCTACTCGAATAGTCTATTGGACTA
TGGGGCTCCCCCGGTCACGTCTCGAGCCGCAATTGAGTTAGCTTTTGAGA
GTCTGGTGGCTAAATATCTCGCACCGTGGATCCCACTTTCTCAAGGGACC
GAGAGCTCTCCTTTGCTGCAGAGACCAATAACTCAAAAGCTGTTGAACTC
AATGGAAGTTCTTATTCGAGGCGGGGCATTTAGAGTTCGCCTTGCGGGCG
ACGGCAAGGTGCGGTACAGGGTTTTGGAGCACTGGAGCCAAACGTATCGA
ATAAGTCGCATGATATGGACTCTTAACTTGCTACAAGAGGCTCTCGCGAC
ATACCCAGACCTTGCAAAGATCAGATGCGAATTTTATGTGAACGTCGCCG
ATTCTCCTCGATCCACCGTAGATTCTATGTCGAGAGATATGGGTGGCATC
CCCGTTTTCTCTTTCCGCACTTCCACGTCATACCTTGATGTTCCTGTCCC
AGACCCAGTGGAATACGGTTCAAACGGAAACTATGTGTGGAACACTGAAG
AGAAATTGCCATATGAATATCGCATCCCCAAACTGGTGTTTCGTGGGAGT
TCAAGTTCACTTCAAGAATATCATGATCACAATTGGCTCTCCGTGCCTCG
CATTCGCCTAGCCGCTCTTGCCAAGCAACATCCAGAACTCATCGATGCCG
GGATCACGAAGTGGATGAAATTAGGGAAGAATACTTCTGTGGACGAGGTT
GAGTCATCATTAGGTACGGGTCTGACGGATGTTCTGAACTATGAAAACCA
GGGAAGATATCAATTCATCATCGATATTGACGGAGGCTTAGGGAGCAGTA
GAAAACGAGGGATTCTTACCAGTGGCGCGGTGCCGTTCTTTCAGAAATCG
AATTGGTATATGTGGTACGAGCCCTTGCTGAAGCCGTTCTACCACTTTTT
ACCAGTCGATACATATCTACAAGACCTTTTGGAACGAGTTTACGCCGCCA
AGGCGGATCCCCAAGGCTCCAAAAGAATCATTGACAGTGCTGGCTGCTTT
GGCAAGGAAGTGATTTCGAAGAAAGCTGCGATGCTGTATTGGAGAGTTCT
TCTTAAACGATACAGTCAATTGCAACATGATCCCGCATCAGGTGACGAAG
AAGTTACACCATCGATGTGTGCATTGCGACCTGCGACAGCAGAAGGACCG
ATGGGGTGCTCTGATGGATGGTATATGTTCAATGGCACTGTGCCATTTGG
ATGTAGATATACTGGGGCAAAGCGTCACCCATACCAACTAGAGTGCTGGA
GAAACATAGGCAGAGGTACAGAATTCAAATTCACGAGCGATGCCGTGCAC
AGTCACTACAACGATGGAAAAGAGTCTACATAG

Coding sequence (CDS) from alignment at ScGOVlb_24229:1031533..1033215+

>Gvermi7030.t1 ID=Gvermi7030.t1|Name=Gvermi7030.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1683bp|location=Sequence derived from alignment at ScGOVlb_24229:1031533..1033215+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGTTTGCGATCCCGGAAAAAGGAGGGAGGGGTGGCTGCAAACGATTAT
TCTGACGAGCATAATCCTCTTTTGCATAATTGCCACCAGCAGATCCATAA
CCAATCCATCATCAAAACCATCGTTTCCCCCGCAAATCAATTATTCCCTG
GAGCATCTCTTTCCCAGCTCGTTTGTTCCAGTCTATGAAATTTTTAACAG
CTCTCAGGCACAGAAGCTGGATTCAGGAAGTTTAATTGATCACGAGAAAC
AGGATGTCCGAATCGGCGACTTGTATCGTCCGAAAATACCGAAAACACTA
CCGTTGTTGTGTTCCGGACCCCCTCGCTACTCGAATAGTCTATTGGACTA
TGGGGCTCCCCCGGTCACGTCTCGAGCCGCAATTGAGTTAGCTTTTGAGA
GTCTGGTGGCTAAATATCTCGCACCGTGGATCCCACTTTCTCAAGGGACC
GAGAGCTCTCCTTTGCTGCAGAGACCAATAACTCAAAAGCTGTTGAACTC
AATGGAAGTTCTTATTCGAGGCGGGGCATTTAGAGTTCGCCTTGCGGGCG
ACGGCAAGGTGCGGTACAGGGTTTTGGAGCACTGGAGCCAAACGTATCGA
ATAAGTCGCATGATATGGACTCTTAACTTGCTACAAGAGGCTCTCGCGAC
ATACCCAGACCTTGCAAAGATCAGATGCGAATTTTATGTGAACGTCGCCG
ATTCTCCTCGATCCACCGTAGATTCTATGTCGAGAGATATGGGTGGCATC
CCCGTTTTCTCTTTCCGCACTTCCACGTCATACCTTGATGTTCCTGTCCC
AGACCCAGTGGAATACGGTTCAAACGGAAACTATGTGTGGAACACTGAAG
AGAAATTGCCATATGAATATCGCATCCCCAAACTGGTGTTTCGTGGGAGT
TCAAGTTCACTTCAAGAATATCATGATCACAATTGGCTCTCCGTGCCTCG
CATTCGCCTAGCCGCTCTTGCCAAGCAACATCCAGAACTCATCGATGCCG
GGATCACGAAGTGGATGAAATTAGGGAAGAATACTTCTGTGGACGAGGTT
GAGTCATCATTAGGTACGGGTCTGACGGATGTTCTGAACTATGAAAACCA
GGGAAGATATCAATTCATCATCGATATTGACGGAGGCTTAGGGAGCAGTA
GAAAACGAGGGATTCTTACCAGTGGCGCGGTGCCGTTCTTTCAGAAATCG
AATTGGTATATGTGGTACGAGCCCTTGCTGAAGCCGTTCTACCACTTTTT
ACCAGTCGATACATATCTACAAGACCTTTTGGAACGAGTTTACGCCGCCA
AGGCGGATCCCCAAGGCTCCAAAAGAATCATTGACAGTGCTGGCTGCTTT
GGCAAGGAAGTGATTTCGAAGAAAGCTGCGATGCTGTATTGGAGAGTTCT
TCTTAAACGATACAGTCAATTGCAACATGATCCCGCATCAGGTGACGAAG
AAGTTACACCATCGATGTGTGCATTGCGACCTGCGACAGCAGAAGGACCG
ATGGGGTGCTCTGATGGATGGTATATGTTCAATGGCACTGTGCCATTTGG
ATGTAGATATACTGGGGCAAAGCGTCACCCATACCAACTAGAGTGCTGGA
GAAACATAGGCAGAGGTACAGAATTCAAATTCACGAGCGATGCCGTGCAC
AGTCACTACAACGATGGAAAAGAGTCTACATAG