Gvermi7023.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi7023.t1
Unique NameGvermi7023.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length127
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24229contigScGOVlb_24229:975900..976575 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi7023Gvermi7023Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_24229 975900..976575 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7023.t1Gvermi7023.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_24229 975900..976575 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7023.t1.start1Gvermi7023.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_24229 975900..975902 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7023.t1.CDS1Gvermi7023.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24229 975900..976001 +
Gvermi7023.t1.CDS2Gvermi7023.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24229 976101..976167 +
Gvermi7023.t1.CDS3Gvermi7023.t1.CDS3Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24229 976264..976359 +
Gvermi7023.t1.CDS4Gvermi7023.t1.CDS4Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24229 976460..976575 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7023.t1.exon1Gvermi7023.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24229 975900..976001 +
Gvermi7023.t1.exon2Gvermi7023.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24229 976101..976167 +
Gvermi7023.t1.exon3Gvermi7023.t1.exon3Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24229 976264..976359 +
Gvermi7023.t1.exon4Gvermi7023.t1.exon4Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24229 976460..976575 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7023.t1.intron1Gvermi7023.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_24229 976002..976100 +
Gvermi7023.t1.intron2Gvermi7023.t1.intron2Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_24229 976168..976263 +
Gvermi7023.t1.intron3Gvermi7023.t1.intron3Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_24229 976360..976459 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7023.t1.stop1Gvermi7023.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_24229 976573..976575 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi7023.t1 ID=Gvermi7023.t1|Name=Gvermi7023.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=127bp
MSSKDAVDEEPRSALNEVIRSTHQLLDRTVEGAKKHSPLNEDRLKAADDA
VAGVIHKAYQAVKRIAVNGNPVVILSSAAVLGAAPSLPFGPRAVIRNAGL
AVAMASVMIYPDHIRFYFGNSSEKKE*
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spliced messenger RNA

>Gvermi7023.t1 ID=Gvermi7023.t1|Name=Gvermi7023.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=381bp|location=Sequence derived from alignment at ScGOVlb_24229:975900..976575+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCTCAAAGGACGCGGTCGACGAAGAGCCGCGTTCAGCCTTGAATGA
AGTCATTCGCAGCACGCATCAACTTTTGGATCGCACCGTCGAAGGAGCCA
AGAAACACTCTCCGTTAAACGAAGACAGACTAAAAGCCGCTGACGATGCG
GTCGCCGGTGTCATCCACAAAGCGTACCAAGCCGTGAAGCGCATCGCTGT
CAACGGCAATCCTGTGGTGATTCTCAGCTCCGCCGCCGTATTGGGCGCTG
CACCGTCCCTGCCATTTGGCCCGCGAGCCGTAATTCGAAATGCAGGCTTG
GCGGTAGCCATGGCGTCAGTGATGATTTATCCGGATCACATCAGATTTTA
CTTTGGCAATTCGTCCGAGAAGAAGGAGTAA
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protein sequence of Gvermi7023.t1

>Gvermi7023.t1 ID=Gvermi7023.t1|Name=Gvermi7023.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=127bp
MSSKDAVDEEPRSALNEVIRSTHQLLDRTVEGAKKHSPLNEDRLKAADDA
VAGVIHKAYQAVKRIAVNGNPVVILSSAAVLGAAPSLPFGPRAVIRNAGL
AVAMASVMIYPDHIRFYFGNSSEKKE*
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mRNA from alignment at ScGOVlb_24229:975900..976575+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi7023.t1 ID=Gvermi7023.t1|Name=Gvermi7023.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=676bp|location=Sequence derived from alignment at ScGOVlb_24229:975900..976575+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAGCTCAAAGGACGCGGTCGACGAAGAGCCGCGTTCAGCCTTGAATGA
AGTCATTCGCAGCACGCATCAACTTTTGGATCGCACCGTCGAAGGAGCCA
AGGTACGGCGGAGTCGTTGTTCAAGCCGCCCAAAGTCGAAAGCAATTGCG
GCACATGGCAAGCTAACATCCGTCATTGCTTGTCGTTCCGTTTCTATCTA
GAAACACTCTCCGTTAAACGAAGACAGACTAAAAGCCGCTGACGATGCGG
TCGCCGGTGTCATCCACAGTACGCATCTGCATTTCACCCAGCGCCCACAA
GTGAGCTCAACAACTAACCAGCGACCGCGACAAATGGAAATGCACGTGCG
ATAACGCACTGCAGAAGCGTACCAAGCCGTGAAGCGCATCGCTGTCAACG
GCAATCCTGTGGTGATTCTCAGCTCCGCCGCCGTATTGGGCGCTGCACCG
TCCCTGCCATGTACGTAAATGCGTCACGGAGACACATACACGAGCGATGC
ACGTGGCTGACATGTTCATTTACACACATTGTTTTGATGACCGTTCGGAC
ACCAACCAAGTTGGCCCGCGAGCCGTAATTCGAAATGCAGGCTTGGCGGT
AGCCATGGCGTCAGTGATGATTTATCCGGATCACATCAGATTTTACTTTG
GCAATTCGTCCGAGAAGAAGGAGTAA
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Coding sequence (CDS) from alignment at ScGOVlb_24229:975900..976575+

>Gvermi7023.t1 ID=Gvermi7023.t1|Name=Gvermi7023.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=381bp|location=Sequence derived from alignment at ScGOVlb_24229:975900..976575+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAGCTCAAAGGACGCGGTCGACGAAGAGCCGCGTTCAGCCTTGAATGA
AGTCATTCGCAGCACGCATCAACTTTTGGATCGCACCGTCGAAGGAGCCA
AGAAACACTCTCCGTTAAACGAAGACAGACTAAAAGCCGCTGACGATGCG
GTCGCCGGTGTCATCCACAAAGCGTACCAAGCCGTGAAGCGCATCGCTGT
CAACGGCAATCCTGTGGTGATTCTCAGCTCCGCCGCCGTATTGGGCGCTG
CACCGTCCCTGCCATTTGGCCCGCGAGCCGTAATTCGAAATGCAGGCTTG
GCGGTAGCCATGGCGTCAGTGATGATTTATCCGGATCACATCAGATTTTA
CTTTGGCAATTCGTCCGAGAAGAAGGAGTAA
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