Gvermi7017.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi7017.t1
Unique NameGvermi7017.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length84
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24229contigScGOVlb_24229:960198..960542 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog7217.FBpp0126883
Preferred nameROMO1
PFAMsRomo1
Max annot lvl33208|Metazoa
GOsGO:0000302,GO:0001302,GO:0001906,GO:0002376,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0006950,GO:0006952,GO:0006955,GO:0006959,GO:0006979,GO:0007568,GO:0007569,GO:0008150,GO:0008284,GO:0009605,GO:0009607,GO:0009617,GO:0009893,GO:0009894,GO:0009987,GO:0010506,GO:0010821,GO:0019222,GO:0019730,GO:0019835,GO:0031323,GO:0031325,GO:0031329,GO:0031640,GO:0032502,GO:0033043,GO:0033554,GO:0034599,GO:0034614,GO:0035821,GO:0042127,GO:0042221,GO:0042742,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044364,GO:0044419,GO:0044424,GO:0044444,GO:0044464,GO:0044764,GO:0048518,GO:0048522,GO:0048869,GO:0050789,GO:0050794,GO:0050829,GO:0050830,GO:0050896,GO:0051128,GO:0051704,GO:0051707,GO:0051715,GO:0051716,GO:0061844,GO:0065007,GO:0070887,GO:0098542,GO:1901700,GO:1901701,GO:1903146,GO:2000377,GO:2000379
Evalue6.82e-08
EggNOG OGsKOG4096@1|root,KOG4096@2759|Eukaryota,3A86Q@33154|Opisthokonta,3BUCS@33208|Metazoa,3D99Q@33213|Bilateria,420B7@6656|Arthropoda,3SNS9@50557|Insecta,4542U@7147|Diptera,45UNZ@7214|Drosophilidae
DescriptionReactive mitochondrial oxygen species modulator 1
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi7017Gvermi7017Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_24229 960198..960542 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7017.t1Gvermi7017.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_24229 960198..960542 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7017.t1.start1Gvermi7017.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_24229 960198..960200 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7017.t1.CDS1Gvermi7017.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24229 960198..960341 +
Gvermi7017.t1.CDS2Gvermi7017.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24229 960435..960542 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7017.t1.exon1Gvermi7017.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24229 960198..960341 +
Gvermi7017.t1.exon2Gvermi7017.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24229 960435..960542 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7017.t1.intron1Gvermi7017.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_24229 960342..960434 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7017.t1.stop1Gvermi7017.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_24229 960540..960542 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi7017.t1 ID=Gvermi7017.t1|Name=Gvermi7017.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=84bp
MTFLDSGRRDCLNKMKNGAILGGSVGSAAGFLFGSYEATQIRGIPVSQKV
GLVLRNSVGGCIVFGFFLAIGTGIRSCNARERY*
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spliced messenger RNA

>Gvermi7017.t1 ID=Gvermi7017.t1|Name=Gvermi7017.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=252bp|location=Sequence derived from alignment at ScGOVlb_24229:960198..960542+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACTTTTCTGGATAGCGGTCGACGTGACTGCCTGAACAAAATGAAGAA
CGGTGCAATTCTCGGCGGTAGTGTAGGAAGTGCTGCCGGATTCCTATTTG
GCTCATACGAAGCGACGCAAATTCGAGGGATTCCCGTTTCACAGAAGGTC
GGATTAGTACTTCGCAATTCTGTCGGGGGATGCATTGTGTTTGGGTTTTT
TTTGGCCATCGGAACAGGTATAAGAAGTTGCAATGCTCGCGAGAGATACT
GA
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protein sequence of Gvermi7017.t1

>Gvermi7017.t1 ID=Gvermi7017.t1|Name=Gvermi7017.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=84bp
MTFLDSGRRDCLNKMKNGAILGGSVGSAAGFLFGSYEATQIRGIPVSQKV
GLVLRNSVGGCIVFGFFLAIGTGIRSCNARERY*
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mRNA from alignment at ScGOVlb_24229:960198..960542+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi7017.t1 ID=Gvermi7017.t1|Name=Gvermi7017.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=345bp|location=Sequence derived from alignment at ScGOVlb_24229:960198..960542+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGACTTTTCTGGATAGCGGTCGACGTGACTGCCTGAACAAAATGAAGAA
CGGTGCAATTCTCGGCGGTAGTGTAGGAAGTGCTGCCGGATTCCTATTTG
GCTCATACGAAGCGACGCAAATTCGAGGGATTCCCGTTTCACAGGTATGG
TTGCTTCGTGACTGTAACATAGCTTTTGTACTCCGAACGATACTGACGAA
TTTGAGTTTGATTTCCGGAAACGTGCTTCTCTTGCAGAAGGTCGGATTAG
TACTTCGCAATTCTGTCGGGGGATGCATTGTGTTTGGGTTTTTTTTGGCC
ATCGGAACAGGTATAAGAAGTTGCAATGCTCGCGAGAGATACTGA
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Coding sequence (CDS) from alignment at ScGOVlb_24229:960198..960542+

>Gvermi7017.t1 ID=Gvermi7017.t1|Name=Gvermi7017.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=252bp|location=Sequence derived from alignment at ScGOVlb_24229:960198..960542+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGACTTTTCTGGATAGCGGTCGACGTGACTGCCTGAACAAAATGAAGAA
CGGTGCAATTCTCGGCGGTAGTGTAGGAAGTGCTGCCGGATTCCTATTTG
GCTCATACGAAGCGACGCAAATTCGAGGGATTCCCGTTTCACAGAAGGTC
GGATTAGTACTTCGCAATTCTGTCGGGGGATGCATTGTGTTTGGGTTTTT
TTTGGCCATCGGAACAGGTATAAGAAGTTGCAATGCTCGCGAGAGATACT
GA
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