Gvermi7011.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi7011.t1
Unique NameGvermi7011.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length529
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24229contigScGOVlb_24229:942671..944470 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005705427.1
Preferred nameGLUD1
PFAMsELFV_dehydrog,ELFV_dehydrog_N
Max annot lvl2759|Eukaryota
KEGG rclassRC00006,RC02799
KEGG koko:K00261
KEGG ReactionR00243,R00248
KEGG Pathwayko00220,ko00250,ko00471,ko00910,ko01100,ko01200,ko04217,ko04964,map00220,map00250,map00471,map00910,map01100,map01200,map04217,map04964
KEGG ModuleM00740
GOsGO:0000003,GO:0000166,GO:0001882,GO:0001883,GO:0002791,GO:0002793,GO:0003008,GO:0003674,GO:0003824,GO:0004352,GO:0004353,GO:0005488,GO:0005515,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005759,GO:0006082,GO:0006103,GO:0006106,GO:0006116,GO:0006139,GO:0006520,GO:0006536,GO:0006537,GO:0006538,GO:0006541,GO:0006725,GO:0006732,GO:0006733,GO:0006734,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006996,GO:0007005,GO:0007275,GO:0007276,GO:0007283,GO:0007399,GO:0007417,GO:0007420,GO:0007610,GO:0007611,GO:0007613,GO:0007616,GO:0008150,GO:0008152,GO:0008652,GO:0009056,GO:0009058,GO:0009063,GO:0009064,GO:0009065,GO:0009084,GO:0009117,GO:0009987,GO:0010035,GO:0010038,GO:0010044,GO:0010646,GO:0010647,GO:0010817,GO:0016020,GO:0016043,GO:0016053,GO:0016054,GO:0016491,GO:0016597,GO:0016638,GO:0016639,GO:0017076,GO:0019001,GO:0019362,GO:0019551,GO:0019637,GO:0019674,GO:0019752,GO:0019866,GO:0019899,GO:0019953,GO:0021549,GO:0022037,GO:0022414,GO:0023051,GO:0023056,GO:0030554,GO:0030902,GO:0031090,GO:0031406,GO:0031966,GO:0031967,GO:0031974,GO:0031975,GO:0032024,GO:0032501,GO:0032502,GO:0032504,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032559,GO:0032561,GO:0032879,GO:0032880,GO:0034641,GO:0035639,GO:0036094,GO:0042221,GO:0042802,GO:0043167,GO:0043168,GO:0043169,GO:0043177,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043436,GO:0043531,GO:0043648,GO:0043649,GO:0043650,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044281,GO:0044282,GO:0044283,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0046394,GO:0046395,GO:0046483,GO:0046496,GO:0046883,GO:0046887,GO:0048037,GO:0048232,GO:0048513,GO:0048518,GO:0048522,GO:0048609,GO:0048731,GO:0048856,GO:0050662,GO:0050708,GO:0050714,GO:0050789,GO:0050794,GO:0050796,GO:0050877,GO:0050890,GO:0050896,GO:0051046,GO:0051047,GO:0051049,GO:0051050,GO:0051186,GO:0051222,GO:0051223,GO:0051287,GO:0051704,GO:0055086,GO:0055114,GO:0060322,GO:0065007,GO:0065008,GO:0070013,GO:0070201,GO:0070403,GO:0070728,GO:0071704,GO:0071840,GO:0072350,GO:0072524,GO:0090087,GO:0090276,GO:0090277,GO:0097159,GO:0097367,GO:1901265,GO:1901360,GO:1901363,GO:1901564,GO:1901565,GO:1901566,GO:1901575,GO:1901576,GO:1901605,GO:1901606,GO:1901607,GO:1903530,GO:1903532,GO:1904951
Evalue5.05e-157
EggNOG OGsCOG0334@1|root,KOG2250@2759|Eukaryota
EC1.4.1.3
Descriptionglutamate dehydrogenase [NAD(P) ] activity
COG categoryE
BRITEko00000,ko00001,ko00002,ko01000,ko04147
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi7011Gvermi7011Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_24229 942671..944470 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7011.t1Gvermi7011.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_24229 942671..944470 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7011.t1.stop1Gvermi7011.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_24229 942671..942673 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7011.t1.CDS1Gvermi7011.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24229 942671..943631 -
Gvermi7011.t1.CDS2Gvermi7011.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24229 943728..943767 -
Gvermi7011.t1.CDS3Gvermi7011.t1.CDS3Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24229 943885..944470 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7011.t1.exon1Gvermi7011.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24229 942671..943631 -
Gvermi7011.t1.exon2Gvermi7011.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24229 943728..943767 -
Gvermi7011.t1.exon3Gvermi7011.t1.exon3Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24229 943885..944470 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7011.t1.intron1Gvermi7011.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_24229 943632..943727 -
Gvermi7011.t1.intron2Gvermi7011.t1.intron2Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_24229 943768..943884 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7011.t1.start1Gvermi7011.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_24229 944468..944470 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi7011.t1 ID=Gvermi7011.t1|Name=Gvermi7011.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=529bp
MSHRFLALVRRSAPALAPRVASFTPPSLRVRYTKTSRPSQEAMPAVVTVP
EPGVDAPTFLDSVNHFFTRAAARTQIESGMMNVIRACNSVVEFKFPLRRD
DGSVEVLTGYRAQHSTHVLPTKGGIRYAPDVNLQEVKALAALMTLKCALV
EVPFGGAKGGVCIDRREYSTDELQRVTRRFTHELHARNLIGSGKDVPAPD
YGTGAQEMSWIRDTFSQLNPGHMFTAGCVTGKPVGHGGIRGRESATGLGV
FFAIRSMLDHKSVLKRSGLTSPGIAGKTFVIQGFGNVGYWSAKFIHEDGG
KIVAIGERDGILYDNEKGISIPALKQHMDTHATIDGFTNEGSPTYRVIPD
TDLCCAIECDVLVPAALENVINGNNVDMVQASIIAEAANGPVTAEADEIL
NERGNVVIIPDLLANSMGVMCSYVEWTKNMTGMRLGRLTKRFEESHGRHL
VDVLESNGIKLSNQQKSNVIAGADEETHVRSGLEDTMIAACAQVVNIADE
KNCPLRDAAYIKALESIAEHYYRAGNWP*
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spliced messenger RNA

>Gvermi7011.t1 ID=Gvermi7011.t1|Name=Gvermi7011.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1587bp|location=Sequence derived from alignment at ScGOVlb_24229:942671..944470- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGCATCGCTTCCTGGCGCTCGTGCGCCGTTCCGCACCAGCTCTGGC
GCCCCGTGTGGCCTCGTTCACCCCGCCTTCGCTGCGCGTTCGCTACACCA
AGACATCGCGCCCCTCGCAGGAAGCAATGCCGGCCGTCGTCACCGTCCCT
GAGCCCGGCGTCGACGCCCCCACATTCCTGGATTCCGTCAACCACTTTTT
CACCCGTGCCGCAGCCCGCACCCAAATCGAGTCGGGCATGATGAACGTCA
TCCGCGCCTGCAACTCTGTCGTCGAGTTCAAATTTCCGCTTCGGCGCGAC
GACGGTTCTGTCGAGGTTCTTACCGGCTACAGAGCACAGCATTCCACCCA
TGTGCTACCCACAAAGGGTGGTATTCGCTACGCGCCCGACGTCAACCTGC
AGGAGGTCAAGGCCTTGGCCGCCCTCATGACCCTCAAATGCGCTCTCGTC
GAGGTCCCCTTCGGCGGCGCTAAAGGCGGTGTATGCATCGATCGTAGGGA
ATACTCTACCGACGAGCTGCAGCGCGTCACCAGGCGTTTCACCCACGAAC
TACATGCCAGGAATCTCATCGGCAGTGGAAAAGACGTCCCTGCGCCTGAC
TACGGAACTGGTGCACAAGAGATGAGTTGGATTCGCGATACCTTTTCTCA
ACTCAACCCGGGGCACATGTTCACTGCGGGATGCGTGACAGGCAAGCCCG
TTGGACACGGAGGCATTCGCGGTCGCGAAAGCGCTACAGGTCTTGGTGTT
TTCTTTGCCATTCGTTCCATGCTGGACCACAAGTCCGTTTTGAAAAGATC
TGGTCTAACCTCACCTGGCATTGCGGGGAAAACTTTTGTCATTCAAGGTT
TTGGAAACGTTGGATATTGGAGCGCAAAGTTCATCCACGAGGACGGCGGT
AAGATTGTTGCCATTGGCGAAAGGGACGGCATTCTTTATGATAATGAAAA
GGGCATTTCTATTCCGGCATTGAAACAGCACATGGATACTCATGCTACGA
TCGACGGCTTCACCAATGAAGGTAGCCCAACATACAGGGTCATCCCTGAT
ACCGATCTATGCTGCGCCATTGAATGTGATGTGCTTGTTCCAGCAGCTTT
GGAAAACGTGATCAACGGCAACAATGTCGACATGGTTCAAGCTAGCATCA
TAGCGGAGGCAGCCAACGGGCCCGTGACGGCAGAAGCTGACGAGATTCTC
AACGAAAGGGGCAACGTTGTGATTATCCCGGACTTGCTTGCAAACAGCAT
GGGTGTCATGTGCTCATACGTGGAATGGACCAAGAACATGACCGGCATGC
GTCTCGGTCGCCTGACAAAGAGGTTTGAGGAAAGTCACGGTCGACATCTA
GTAGACGTGCTCGAAAGCAACGGTATTAAGCTTTCCAACCAGCAAAAGAG
TAACGTCATCGCTGGTGCAGATGAGGAAACCCACGTGCGTTCAGGATTGG
AAGATACGATGATCGCAGCCTGCGCACAGGTCGTTAATATCGCCGACGAG
AAAAACTGCCCCTTGCGTGACGCTGCTTACATCAAAGCACTAGAGTCAAT
TGCCGAGCATTATTATAGAGCCGGCAATTGGCCGTAA
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protein sequence of Gvermi7011.t1

>Gvermi7011.t1 ID=Gvermi7011.t1|Name=Gvermi7011.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=529bp
MSHRFLALVRRSAPALAPRVASFTPPSLRVRYTKTSRPSQEAMPAVVTVP
EPGVDAPTFLDSVNHFFTRAAARTQIESGMMNVIRACNSVVEFKFPLRRD
DGSVEVLTGYRAQHSTHVLPTKGGIRYAPDVNLQEVKALAALMTLKCALV
EVPFGGAKGGVCIDRREYSTDELQRVTRRFTHELHARNLIGSGKDVPAPD
YGTGAQEMSWIRDTFSQLNPGHMFTAGCVTGKPVGHGGIRGRESATGLGV
FFAIRSMLDHKSVLKRSGLTSPGIAGKTFVIQGFGNVGYWSAKFIHEDGG
KIVAIGERDGILYDNEKGISIPALKQHMDTHATIDGFTNEGSPTYRVIPD
TDLCCAIECDVLVPAALENVINGNNVDMVQASIIAEAANGPVTAEADEIL
NERGNVVIIPDLLANSMGVMCSYVEWTKNMTGMRLGRLTKRFEESHGRHL
VDVLESNGIKLSNQQKSNVIAGADEETHVRSGLEDTMIAACAQVVNIADE
KNCPLRDAAYIKALESIAEHYYRAGNWP*
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mRNA from alignment at ScGOVlb_24229:942671..944470-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi7011.t1 ID=Gvermi7011.t1|Name=Gvermi7011.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1800bp|location=Sequence derived from alignment at ScGOVlb_24229:942671..944470- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTCGCATCGCTTCCTGGCGCTCGTGCGCCGTTCCGCACCAGCTCTGGC
GCCCCGTGTGGCCTCGTTCACCCCGCCTTCGCTGCGCGTTCGCTACACCA
AGACATCGCGCCCCTCGCAGGAAGCAATGCCGGCCGTCGTCACCGTCCCT
GAGCCCGGCGTCGACGCCCCCACATTCCTGGATTCCGTCAACCACTTTTT
CACCCGTGCCGCAGCCCGCACCCAAATCGAGTCGGGCATGATGAACGTCA
TCCGCGCCTGCAACTCTGTCGTCGAGTTCAAATTTCCGCTTCGGCGCGAC
GACGGTTCTGTCGAGGTTCTTACCGGCTACAGAGCACAGCATTCCACCCA
TGTGCTACCCACAAAGGGTGGTATTCGCTACGCGCCCGACGTCAACCTGC
AGGAGGTCAAGGCCTTGGCCGCCCTCATGACCCTCAAATGCGCTCTCGTC
GAGGTCCCCTTCGGCGGCGCTAAAGGCGGTGTATGCATCGATCGTAGGGA
ATACTCTACCGACGAGCTGCAGCGCGTCACCAGGCGTTTCACCCACGAAC
TACATGCCAGGAATCTCATCGGCAGTGGAAAAGACGGTATGTGCGCATGC
GTCTCGCCCCTTCCCGCTCCGCAACCTCGTTCGCTCGGGGTCCCATGATC
GCCAATGCAACGTCTGACCCATGCTCCCCGTTCCCGCTTTTTCGTCATTG
CAGTCCCTGCGCCTGACTACGGAACTGGTGCACAAGAGATGAGGTGAGTG
CTTCCTTGCGTGCCTTGCGCCAGCGTTTGCTGTTTTGCTCTGCACATAGC
CTACTCACACAACTTTTTTGTATTCATGCTGTTGAACAGTTGGATTCGCG
ATACCTTTTCTCAACTCAACCCGGGGCACATGTTCACTGCGGGATGCGTG
ACAGGCAAGCCCGTTGGACACGGAGGCATTCGCGGTCGCGAAAGCGCTAC
AGGTCTTGGTGTTTTCTTTGCCATTCGTTCCATGCTGGACCACAAGTCCG
TTTTGAAAAGATCTGGTCTAACCTCACCTGGCATTGCGGGGAAAACTTTT
GTCATTCAAGGTTTTGGAAACGTTGGATATTGGAGCGCAAAGTTCATCCA
CGAGGACGGCGGTAAGATTGTTGCCATTGGCGAAAGGGACGGCATTCTTT
ATGATAATGAAAAGGGCATTTCTATTCCGGCATTGAAACAGCACATGGAT
ACTCATGCTACGATCGACGGCTTCACCAATGAAGGTAGCCCAACATACAG
GGTCATCCCTGATACCGATCTATGCTGCGCCATTGAATGTGATGTGCTTG
TTCCAGCAGCTTTGGAAAACGTGATCAACGGCAACAATGTCGACATGGTT
CAAGCTAGCATCATAGCGGAGGCAGCCAACGGGCCCGTGACGGCAGAAGC
TGACGAGATTCTCAACGAAAGGGGCAACGTTGTGATTATCCCGGACTTGC
TTGCAAACAGCATGGGTGTCATGTGCTCATACGTGGAATGGACCAAGAAC
ATGACCGGCATGCGTCTCGGTCGCCTGACAAAGAGGTTTGAGGAAAGTCA
CGGTCGACATCTAGTAGACGTGCTCGAAAGCAACGGTATTAAGCTTTCCA
ACCAGCAAAAGAGTAACGTCATCGCTGGTGCAGATGAGGAAACCCACGTG
CGTTCAGGATTGGAAGATACGATGATCGCAGCCTGCGCACAGGTCGTTAA
TATCGCCGACGAGAAAAACTGCCCCTTGCGTGACGCTGCTTACATCAAAG
CACTAGAGTCAATTGCCGAGCATTATTATAGAGCCGGCAATTGGCCGTAA
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Coding sequence (CDS) from alignment at ScGOVlb_24229:942671..944470-

>Gvermi7011.t1 ID=Gvermi7011.t1|Name=Gvermi7011.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1587bp|location=Sequence derived from alignment at ScGOVlb_24229:942671..944470- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTCGCATCGCTTCCTGGCGCTCGTGCGCCGTTCCGCACCAGCTCTGGC
GCCCCGTGTGGCCTCGTTCACCCCGCCTTCGCTGCGCGTTCGCTACACCA
AGACATCGCGCCCCTCGCAGGAAGCAATGCCGGCCGTCGTCACCGTCCCT
GAGCCCGGCGTCGACGCCCCCACATTCCTGGATTCCGTCAACCACTTTTT
CACCCGTGCCGCAGCCCGCACCCAAATCGAGTCGGGCATGATGAACGTCA
TCCGCGCCTGCAACTCTGTCGTCGAGTTCAAATTTCCGCTTCGGCGCGAC
GACGGTTCTGTCGAGGTTCTTACCGGCTACAGAGCACAGCATTCCACCCA
TGTGCTACCCACAAAGGGTGGTATTCGCTACGCGCCCGACGTCAACCTGC
AGGAGGTCAAGGCCTTGGCCGCCCTCATGACCCTCAAATGCGCTCTCGTC
GAGGTCCCCTTCGGCGGCGCTAAAGGCGGTGTATGCATCGATCGTAGGGA
ATACTCTACCGACGAGCTGCAGCGCGTCACCAGGCGTTTCACCCACGAAC
TACATGCCAGGAATCTCATCGGCAGTGGAAAAGACGTCCCTGCGCCTGAC
TACGGAACTGGTGCACAAGAGATGAGTTGGATTCGCGATACCTTTTCTCA
ACTCAACCCGGGGCACATGTTCACTGCGGGATGCGTGACAGGCAAGCCCG
TTGGACACGGAGGCATTCGCGGTCGCGAAAGCGCTACAGGTCTTGGTGTT
TTCTTTGCCATTCGTTCCATGCTGGACCACAAGTCCGTTTTGAAAAGATC
TGGTCTAACCTCACCTGGCATTGCGGGGAAAACTTTTGTCATTCAAGGTT
TTGGAAACGTTGGATATTGGAGCGCAAAGTTCATCCACGAGGACGGCGGT
AAGATTGTTGCCATTGGCGAAAGGGACGGCATTCTTTATGATAATGAAAA
GGGCATTTCTATTCCGGCATTGAAACAGCACATGGATACTCATGCTACGA
TCGACGGCTTCACCAATGAAGGTAGCCCAACATACAGGGTCATCCCTGAT
ACCGATCTATGCTGCGCCATTGAATGTGATGTGCTTGTTCCAGCAGCTTT
GGAAAACGTGATCAACGGCAACAATGTCGACATGGTTCAAGCTAGCATCA
TAGCGGAGGCAGCCAACGGGCCCGTGACGGCAGAAGCTGACGAGATTCTC
AACGAAAGGGGCAACGTTGTGATTATCCCGGACTTGCTTGCAAACAGCAT
GGGTGTCATGTGCTCATACGTGGAATGGACCAAGAACATGACCGGCATGC
GTCTCGGTCGCCTGACAAAGAGGTTTGAGGAAAGTCACGGTCGACATCTA
GTAGACGTGCTCGAAAGCAACGGTATTAAGCTTTCCAACCAGCAAAAGAG
TAACGTCATCGCTGGTGCAGATGAGGAAACCCACGTGCGTTCAGGATTGG
AAGATACGATGATCGCAGCCTGCGCACAGGTCGTTAATATCGCCGACGAG
AAAAACTGCCCCTTGCGTGACGCTGCTTACATCAAAGCACTAGAGTCAAT
TGCCGAGCATTATTATAGAGCCGGCAATTGGCCGTAA
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