Gvermi7005.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi7005.t1
Unique Name	Gvermi7005.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	658

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_24229	contig	ScGOVlb_24229:897782..899755 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	2880.D7G0K9
Preferred name	PHO89
PFAMs	PHO4
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K01280,ko:K03306,ko:K14640
KEGG TC	2.A.20,2.A.20.2
GOs	GO:0003674,GO:0005215,GO:0005315,GO:0005436,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005886,GO:0005887,GO:0006810,GO:0006811,GO:0006812,GO:0006814,GO:0006817,GO:0006820,GO:0008150,GO:0008324,GO:0012505,GO:0015075,GO:0015077,GO:0015081,GO:0015291,GO:0015293,GO:0015294,GO:0015318,GO:0015319,GO:0015370,GO:0015672,GO:0015698,GO:0016020,GO:0016021,GO:0022804,GO:0022857,GO:0022890,GO:0030001,GO:0031224,GO:0031226,GO:0034220,GO:0035435,GO:0035725,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044425,GO:0044444,GO:0044459,GO:0044464,GO:0046873,GO:0051179,GO:0051234,GO:0055085,GO:0071944,GO:0098655,GO:0098656,GO:0098660,GO:0098661,GO:0098662
Evalue	7.29e-98
EggNOG OGs	COG0306@1\|root,KOG2493@2759\|Eukaryota
EC	3.4.14.10
Description	inorganic phosphate transmembrane transporter activity
COG category	U
BRITE	ko00000,ko01000,ko01002,ko02000,ko03110

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi7005	Gvermi7005	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_24229 897782..899755 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi7005.t1.start1	Gvermi7005.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_24229 897782..897784 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi7005.t1.CDS1	Gvermi7005.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_24229 897782..899755 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi7005.t1.exon1	Gvermi7005.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_24229 897782..899755 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi7005.t1.stop1	Gvermi7005.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_24229 899753..899755 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi7005.t1	Gvermi7005.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_24229 897782..899755 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_24229:897782..899755+
coding sequence from alignment at ScGOVlb_24229:897782..899755+

mRNA sequence

>Gvermi7005.t1 ID=Gvermi7005.t1|Name=Gvermi7005.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=658bp
MAAPTLDYPWPIQGAPTSFALGEAVQINTVEKYYWMVVVGGILAFAMAWA
IGANDVANAFATSVGAGSLSLKWACAIAAVMEFTGALLLGGNVSDTVRKK
IIDPDVFDPNSPTGSLNGPEMLMTGFLVALMTATTWLVLATYLSLPVSTT
HSIIGALVGVGIAYRGFATVNWWEGDSFKSKLKGVVGVILSWIISPLLSA
IFAVIFFLIVRTLVLRRQNPYQKGLRFMPVFYGFAVALAVFFIIYKGDSR
FDIAEDLGVGPCVGIALGTGVAVAGLSALIVVPLAKRYIERWEARLKEAV
ENPEAAAKAKEKSDRVDAALRKVGVNVNISEELDEDVVRIHESVEKFDPK
AEQLFTWIQIFTAAFDSFAHGANDVANAIAPFASIYQLQRNHGIISKVNT
NEFEAPVTITEGQLNGQSFGEGDDLPDQDAFCGTVEGDSYFRCVSPNRAA
FPFLRPQADGASQDQFEGYDAEGKSVIEPRTCFTECNRGSYESYDSFKQS
VPLWILAMGGAGIVLGLAMWGYRIILAIGVKLTKLTPSRGFSIEIGAAIT
VLIASQIGIPVSTTHCQVGATMGVGLVEFKKSTVNWKQFLFICIGWVFTV
VFTGVLSAVIYLIITRSPMNFSATSTELDYCPGQRLFLFDPSTNTFRGVS
CAGVNFE*

spliced messenger RNA

>Gvermi7005.t1 ID=Gvermi7005.t1|Name=Gvermi7005.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1974bp|location=Sequence derived from alignment at ScGOVlb_24229:897782..899755+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCGCGCCCACGCTCGACTACCCCTGGCCCATCCAGGGCGCCCCGAC
TTCCTTCGCCCTGGGCGAGGCCGTCCAGATCAACACCGTCGAAAAGTACT
ACTGGATGGTCGTCGTCGGCGGCATCCtcgccttcgccatggcctgggcc
atcggcgccaacgacgtcgcaaacgcctttgccacgtccgtcgGCGCTGG
ATCGCTCAGCCTCAAGTGGGCCTGCGCCATTGCCGCCGTCATGGAGTTCA
CCGGCGCCCTGCTGCTCGGCGGCAACGTCTCCGACACCGTGCGCAAGAAG
ATCATCGACCCGGATGTGTTCGACCCCAACAGCCCCACCGGCTCCCTCAA
CGGCCCGGAGATGCTCATGACCGGCTTCCTAGTCGCCCTCATGACCGCCA
CCACCTGGCTCGTCCTGGCCACCTACCTCAGCCTCCCGGTGTCCACCACG
CACTCCATCATCGGAGCGCTCGTCGGCGTCGGCATTGCGTACCGTGGCTT
CGCCACCGTCAACTGGTGGGAAGGCGATTCCTTCAAGAGCAAGCTCAAAG
GTGTCGTCGGAGTGATCCTGTCGTGGATCATTTCGCCGCTTCTCTCCGCT
ATCTTTGCTGTCATCTTCTTCCTCATCGTCCGTACCCTCGTCCTGCGCCG
CCAAAATCCATACCAGAAAGGCCTCCGTTTTATGCCTGTTTTCTACGGCT
TTGCAGTTGCACTGGCCGTCTTCTTCATTATTTACAAGGGAGATTCTCGA
TTCGACATTGCCGAAGACCTCGGAGTCGGCCCGTGTGTCGGCATTGCCCT
TGGCACTGGCGTCGCCGTCGCTGGTCTAAGTGCCCTCATCGTCGTCCCAC
TTGCCAAGCGTTACATTGAGCGATGGGAGGCTCGCCTGAAGGAGGCCGTT
GAGAACCCAGAAGCGGCCGCAAAGGCAAAGGAAAAGAGCGATAGGGTTGA
TGCAGCCCTCAGAAAGGTCGGCGTAAACGTGAACATTTCGGAGGAACTTG
ATGAAGACGTCGTTCGCATTCACGAGAGCGTCGAGAAGTTCGACCCCAAG
GCTGAACAGCTCTTCACTTGGATTCAGATCTTCACGGCTGCGTTCGACTC
CTTTGCGCATGGCGCTAACGACGTTGCCAACGCCATTGCTCCGTTTGCCT
CCATCTACCAGCTTCAGCGCAACCATGGCATCATCAGTAAGGTGAACACG
AATGAGTTTGAAGCACCCGTCACCATCACTGAGGGGCAGCTTAACGGCCA
AAGTTTTGGAGAGGGAGACGATCTTCCCGACCAAGATGCCTTTTGTGGTA
CAGTTGAAGGAGATTCCTACTTTAGATGCGTTTCTCCAAACAGAGCCGCC
TTCCCGTTTTTGCGGCCACAGGCTGATGGCGCCTCTCAAGACCAGTTTGA
AGGTTACGACGCAGAGGGAAAAAGTGTTATTGAGCCAAGAACCTGTTTTA
CCGAGTGTAACAGAGGTTCGTATGAGTCGTACGACTCTTTCAAGCAAAGT
GTGCCGCTGTGGATTTTGGCAATGGGCGGTGCAGGCATTGTTCTTGGGCT
GGCCATGTGGGGATACCGCATTATCCTGGCCATTGGTGTCAAGTTGACCA
AGCTGACCCCGTCTCGCGGATTCTCCATTGAAATTGGCGCCGCCATCACC
GTCCTCATAGCGTCGCAAATTGGCATTCCAGTGTCCACAACCCATTGCCA
GGTTGGTGCGACAATGGGCGTGGGTCTTGTTGAATTCAAGAAATCTACCG
TGAACTGGAAGCAATTCCTCTTCATATGCATCGGTTGGGTGTTCACCGTT
GTGTTTACAGGCGTCCTATCTGCGGTCATATACCTCATCATCACTCGCAG
TCCGATGAACTTCTCGGCCACGTCCACGGAGTTGGATTACTGCCCTGGTC
AACGTCTGTTCTTGTTTGACCCGAGTACGAATACGTTCCGTGGAGTGTCT
TGCGCGGGAGTTAATTTTGAATAA

protein sequence of Gvermi7005.t1

>Gvermi7005.t1 ID=Gvermi7005.t1|Name=Gvermi7005.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=658bp
MAAPTLDYPWPIQGAPTSFALGEAVQINTVEKYYWMVVVGGILAFAMAWA
IGANDVANAFATSVGAGSLSLKWACAIAAVMEFTGALLLGGNVSDTVRKK
IIDPDVFDPNSPTGSLNGPEMLMTGFLVALMTATTWLVLATYLSLPVSTT
HSIIGALVGVGIAYRGFATVNWWEGDSFKSKLKGVVGVILSWIISPLLSA
IFAVIFFLIVRTLVLRRQNPYQKGLRFMPVFYGFAVALAVFFIIYKGDSR
FDIAEDLGVGPCVGIALGTGVAVAGLSALIVVPLAKRYIERWEARLKEAV
ENPEAAAKAKEKSDRVDAALRKVGVNVNISEELDEDVVRIHESVEKFDPK
AEQLFTWIQIFTAAFDSFAHGANDVANAIAPFASIYQLQRNHGIISKVNT
NEFEAPVTITEGQLNGQSFGEGDDLPDQDAFCGTVEGDSYFRCVSPNRAA
FPFLRPQADGASQDQFEGYDAEGKSVIEPRTCFTECNRGSYESYDSFKQS
VPLWILAMGGAGIVLGLAMWGYRIILAIGVKLTKLTPSRGFSIEIGAAIT
VLIASQIGIPVSTTHCQVGATMGVGLVEFKKSTVNWKQFLFICIGWVFTV
VFTGVLSAVIYLIITRSPMNFSATSTELDYCPGQRLFLFDPSTNTFRGVS
CAGVNFE*

mRNA from alignment at ScGOVlb_24229:897782..899755+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi7005.t1 ID=Gvermi7005.t1|Name=Gvermi7005.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1974bp|location=Sequence derived from alignment at ScGOVlb_24229:897782..899755+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCCGCGCCCACGCTCGACTACCCCTGGCCCATCCAGGGCGCCCCGAC
TTCCTTCGCCCTGGGCGAGGCCGTCCAGATCAACACCGTCGAAAAGTACT
ACTGGATGGTCGTCGTCGGCGGCATCCtcgccttcgccatggcctgggcc
atcggcgccaacgacgtcgcaaacgcctttgccacgtccgtcgGCGCTGG
ATCGCTCAGCCTCAAGTGGGCCTGCGCCATTGCCGCCGTCATGGAGTTCA
CCGGCGCCCTGCTGCTCGGCGGCAACGTCTCCGACACCGTGCGCAAGAAG
ATCATCGACCCGGATGTGTTCGACCCCAACAGCCCCACCGGCTCCCTCAA
CGGCCCGGAGATGCTCATGACCGGCTTCCTAGTCGCCCTCATGACCGCCA
CCACCTGGCTCGTCCTGGCCACCTACCTCAGCCTCCCGGTGTCCACCACG
CACTCCATCATCGGAGCGCTCGTCGGCGTCGGCATTGCGTACCGTGGCTT
CGCCACCGTCAACTGGTGGGAAGGCGATTCCTTCAAGAGCAAGCTCAAAG
GTGTCGTCGGAGTGATCCTGTCGTGGATCATTTCGCCGCTTCTCTCCGCT
ATCTTTGCTGTCATCTTCTTCCTCATCGTCCGTACCCTCGTCCTGCGCCG
CCAAAATCCATACCAGAAAGGCCTCCGTTTTATGCCTGTTTTCTACGGCT
TTGCAGTTGCACTGGCCGTCTTCTTCATTATTTACAAGGGAGATTCTCGA
TTCGACATTGCCGAAGACCTCGGAGTCGGCCCGTGTGTCGGCATTGCCCT
TGGCACTGGCGTCGCCGTCGCTGGTCTAAGTGCCCTCATCGTCGTCCCAC
TTGCCAAGCGTTACATTGAGCGATGGGAGGCTCGCCTGAAGGAGGCCGTT
GAGAACCCAGAAGCGGCCGCAAAGGCAAAGGAAAAGAGCGATAGGGTTGA
TGCAGCCCTCAGAAAGGTCGGCGTAAACGTGAACATTTCGGAGGAACTTG
ATGAAGACGTCGTTCGCATTCACGAGAGCGTCGAGAAGTTCGACCCCAAG
GCTGAACAGCTCTTCACTTGGATTCAGATCTTCACGGCTGCGTTCGACTC
CTTTGCGCATGGCGCTAACGACGTTGCCAACGCCATTGCTCCGTTTGCCT
CCATCTACCAGCTTCAGCGCAACCATGGCATCATCAGTAAGGTGAACACG
AATGAGTTTGAAGCACCCGTCACCATCACTGAGGGGCAGCTTAACGGCCA
AAGTTTTGGAGAGGGAGACGATCTTCCCGACCAAGATGCCTTTTGTGGTA
CAGTTGAAGGAGATTCCTACTTTAGATGCGTTTCTCCAAACAGAGCCGCC
TTCCCGTTTTTGCGGCCACAGGCTGATGGCGCCTCTCAAGACCAGTTTGA
AGGTTACGACGCAGAGGGAAAAAGTGTTATTGAGCCAAGAACCTGTTTTA
CCGAGTGTAACAGAGGTTCGTATGAGTCGTACGACTCTTTCAAGCAAAGT
GTGCCGCTGTGGATTTTGGCAATGGGCGGTGCAGGCATTGTTCTTGGGCT
GGCCATGTGGGGATACCGCATTATCCTGGCCATTGGTGTCAAGTTGACCA
AGCTGACCCCGTCTCGCGGATTCTCCATTGAAATTGGCGCCGCCATCACC
GTCCTCATAGCGTCGCAAATTGGCATTCCAGTGTCCACAACCCATTGCCA
GGTTGGTGCGACAATGGGCGTGGGTCTTGTTGAATTCAAGAAATCTACCG
TGAACTGGAAGCAATTCCTCTTCATATGCATCGGTTGGGTGTTCACCGTT
GTGTTTACAGGCGTCCTATCTGCGGTCATATACCTCATCATCACTCGCAG
TCCGATGAACTTCTCGGCCACGTCCACGGAGTTGGATTACTGCCCTGGTC
AACGTCTGTTCTTGTTTGACCCGAGTACGAATACGTTCCGTGGAGTGTCT
TGCGCGGGAGTTAATTTTGAATAA

Coding sequence (CDS) from alignment at ScGOVlb_24229:897782..899755+

>Gvermi7005.t1 ID=Gvermi7005.t1|Name=Gvermi7005.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1974bp|location=Sequence derived from alignment at ScGOVlb_24229:897782..899755+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCCGCGCCCACGCTCGACTACCCCTGGCCCATCCAGGGCGCCCCGAC
TTCCTTCGCCCTGGGCGAGGCCGTCCAGATCAACACCGTCGAAAAGTACT
ACTGGATGGTCGTCGTCGGCGGCATCCtcgccttcgccatggcctgggcc
atcggcgccaacgacgtcgcaaacgcctttgccacgtccgtcgGCGCTGG
ATCGCTCAGCCTCAAGTGGGCCTGCGCCATTGCCGCCGTCATGGAGTTCA
CCGGCGCCCTGCTGCTCGGCGGCAACGTCTCCGACACCGTGCGCAAGAAG
ATCATCGACCCGGATGTGTTCGACCCCAACAGCCCCACCGGCTCCCTCAA
CGGCCCGGAGATGCTCATGACCGGCTTCCTAGTCGCCCTCATGACCGCCA
CCACCTGGCTCGTCCTGGCCACCTACCTCAGCCTCCCGGTGTCCACCACG
CACTCCATCATCGGAGCGCTCGTCGGCGTCGGCATTGCGTACCGTGGCTT
CGCCACCGTCAACTGGTGGGAAGGCGATTCCTTCAAGAGCAAGCTCAAAG
GTGTCGTCGGAGTGATCCTGTCGTGGATCATTTCGCCGCTTCTCTCCGCT
ATCTTTGCTGTCATCTTCTTCCTCATCGTCCGTACCCTCGTCCTGCGCCG
CCAAAATCCATACCAGAAAGGCCTCCGTTTTATGCCTGTTTTCTACGGCT
TTGCAGTTGCACTGGCCGTCTTCTTCATTATTTACAAGGGAGATTCTCGA
TTCGACATTGCCGAAGACCTCGGAGTCGGCCCGTGTGTCGGCATTGCCCT
TGGCACTGGCGTCGCCGTCGCTGGTCTAAGTGCCCTCATCGTCGTCCCAC
TTGCCAAGCGTTACATTGAGCGATGGGAGGCTCGCCTGAAGGAGGCCGTT
GAGAACCCAGAAGCGGCCGCAAAGGCAAAGGAAAAGAGCGATAGGGTTGA
TGCAGCCCTCAGAAAGGTCGGCGTAAACGTGAACATTTCGGAGGAACTTG
ATGAAGACGTCGTTCGCATTCACGAGAGCGTCGAGAAGTTCGACCCCAAG
GCTGAACAGCTCTTCACTTGGATTCAGATCTTCACGGCTGCGTTCGACTC
CTTTGCGCATGGCGCTAACGACGTTGCCAACGCCATTGCTCCGTTTGCCT
CCATCTACCAGCTTCAGCGCAACCATGGCATCATCAGTAAGGTGAACACG
AATGAGTTTGAAGCACCCGTCACCATCACTGAGGGGCAGCTTAACGGCCA
AAGTTTTGGAGAGGGAGACGATCTTCCCGACCAAGATGCCTTTTGTGGTA
CAGTTGAAGGAGATTCCTACTTTAGATGCGTTTCTCCAAACAGAGCCGCC
TTCCCGTTTTTGCGGCCACAGGCTGATGGCGCCTCTCAAGACCAGTTTGA
AGGTTACGACGCAGAGGGAAAAAGTGTTATTGAGCCAAGAACCTGTTTTA
CCGAGTGTAACAGAGGTTCGTATGAGTCGTACGACTCTTTCAAGCAAAGT
GTGCCGCTGTGGATTTTGGCAATGGGCGGTGCAGGCATTGTTCTTGGGCT
GGCCATGTGGGGATACCGCATTATCCTGGCCATTGGTGTCAAGTTGACCA
AGCTGACCCCGTCTCGCGGATTCTCCATTGAAATTGGCGCCGCCATCACC
GTCCTCATAGCGTCGCAAATTGGCATTCCAGTGTCCACAACCCATTGCCA
GGTTGGTGCGACAATGGGCGTGGGTCTTGTTGAATTCAAGAAATCTACCG
TGAACTGGAAGCAATTCCTCTTCATATGCATCGGTTGGGTGTTCACCGTT
GTGTTTACAGGCGTCCTATCTGCGGTCATATACCTCATCATCACTCGCAG
TCCGATGAACTTCTCGGCCACGTCCACGGAGTTGGATTACTGCCCTGGTC
AACGTCTGTTCTTGTTTGACCCGAGTACGAATACGTTCCGTGGAGTGTCT
TGCGCGGGAGTTAATTTTGAATAA