Gvermi6987.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi6987.t1
Unique NameGvermi6987.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length159
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24229contigScGOVlb_24229:839004..839561 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog41875.XP_007511837.1
PFAMsNifU_N
Max annot lvl3041|Chlorophyta
KEGG koko:K22068
Evalue7.27e-69
EggNOG OGsCOG0822@1|root,KOG3361@2759|Eukaryota,37TT5@33090|Viridiplantae,34KEQ@3041|Chlorophyta
DescriptionScaffold protein for the de novo synthesis of iron- sulfur (Fe-S) clusters within mitochondria, which is required for maturation of both mitochondrial and cytoplasmic 2Fe-2S and 4Fe-4S proteins
COG categoryC
BRITEko00000,ko03029
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi6987Gvermi6987Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_24229 839004..839561 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6987.t1Gvermi6987.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_24229 839004..839561 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6987.t1.stop1Gvermi6987.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_24229 839004..839006 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6987.t1.CDS1Gvermi6987.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24229 839004..839364 -
Gvermi6987.t1.CDS2Gvermi6987.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24229 839446..839561 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6987.t1.exon1Gvermi6987.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24229 839004..839364 -
Gvermi6987.t1.exon2Gvermi6987.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24229 839446..839561 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6987.t1.intron1Gvermi6987.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_24229 839365..839445 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6987.t1.start1Gvermi6987.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_24229 839559..839561 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi6987.t1 ID=Gvermi6987.t1|Name=Gvermi6987.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=159bp
MIRTTVTALNRAHGSALTNLAKRSRCYHDKVIDHYENPRNVGSLNKEDKN
VGTGLVGAPACGDVMKLQIRVNDDGEIVESAFKTFGCGSAIASSSLATEW
VKGRNVDDATKIKNSDIAKELKLPPVKLHCSMLAEDAIKAAIKDLKDKQG
GAQSAPSS*
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spliced messenger RNA

>Gvermi6987.t1 ID=Gvermi6987.t1|Name=Gvermi6987.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=477bp|location=Sequence derived from alignment at ScGOVlb_24229:839004..839561- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATTAGAACCACAGTAACTGCCCTCAACAGGGCGCATGGCTCTGCCCT
GACCAACTTGGCCAAGCGAAGCCGTTGCTACCACGACAAGGTAATCGACC
ACTATGAGAACCCAAGAAACGTGGGCAGCCTCAATAAAGAAGATAAGAAC
GTCGGCACCGGTTTAGTTGGCGCCCCCGCTTGCGGCGACGTCATGAAGCT
TCAGATTCGCGTCAACGATGACGGGGAAATCGTCGAGTCAGCTTTTAAGA
CTTTTGGATGTGGCTCTGCCATTGCATCTTCTTCTCTGGCTACAGAGTGG
GTCAAAGGCCGAAATGTCGACGACGCCACAAAAATCAAGAACAGCGACAT
TGCGAAAGAGCTCAAATTGCCTCCCGTCAAGTTGCACTGCTCTATGCTTG
CAGAGGATGCCATCAAGGCTGCCATCAAGGATCTTAAAGATAAGCAAGGG
GGAGCCCAAAGTGCACCCAGCTCTTAG
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protein sequence of Gvermi6987.t1

>Gvermi6987.t1 ID=Gvermi6987.t1|Name=Gvermi6987.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=159bp
MIRTTVTALNRAHGSALTNLAKRSRCYHDKVIDHYENPRNVGSLNKEDKN
VGTGLVGAPACGDVMKLQIRVNDDGEIVESAFKTFGCGSAIASSSLATEW
VKGRNVDDATKIKNSDIAKELKLPPVKLHCSMLAEDAIKAAIKDLKDKQG
GAQSAPSS*
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mRNA from alignment at ScGOVlb_24229:839004..839561-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi6987.t1 ID=Gvermi6987.t1|Name=Gvermi6987.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=558bp|location=Sequence derived from alignment at ScGOVlb_24229:839004..839561- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGATTAGAACCACAGTAACTGCCCTCAACAGGGCGCATGGCTCTGCCCT
GACCAACTTGGCCAAGCGAAGCCGTTGCTACCACGACAAGGTAATCGACC
ACTATGAGAACCCAAGGTAAGCCTATACTTCCATTGCCGCGCCCTCGAAA
GCGCCCCTGCTCGCATGCTGACCCTCTTCCTTCTCCCTTCTCCAAAGAAA
CGTGGGCAGCCTCAATAAAGAAGATAAGAACGTCGGCACCGGTTTAGTTG
GCGCCCCCGCTTGCGGCGACGTCATGAAGCTTCAGATTCGCGTCAACGAT
GACGGGGAAATCGTCGAGTCAGCTTTTAAGACTTTTGGATGTGGCTCTGC
CATTGCATCTTCTTCTCTGGCTACAGAGTGGGTCAAAGGCCGAAATGTCG
ACGACGCCACAAAAATCAAGAACAGCGACATTGCGAAAGAGCTCAAATTG
CCTCCCGTCAAGTTGCACTGCTCTATGCTTGCAGAGGATGCCATCAAGGC
TGCCATCAAGGATCTTAAAGATAAGCAAGGGGGAGCCCAAAGTGCACCCA
GCTCTTAG
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Coding sequence (CDS) from alignment at ScGOVlb_24229:839004..839561-

>Gvermi6987.t1 ID=Gvermi6987.t1|Name=Gvermi6987.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=477bp|location=Sequence derived from alignment at ScGOVlb_24229:839004..839561- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGATTAGAACCACAGTAACTGCCCTCAACAGGGCGCATGGCTCTGCCCT
GACCAACTTGGCCAAGCGAAGCCGTTGCTACCACGACAAGGTAATCGACC
ACTATGAGAACCCAAGAAACGTGGGCAGCCTCAATAAAGAAGATAAGAAC
GTCGGCACCGGTTTAGTTGGCGCCCCCGCTTGCGGCGACGTCATGAAGCT
TCAGATTCGCGTCAACGATGACGGGGAAATCGTCGAGTCAGCTTTTAAGA
CTTTTGGATGTGGCTCTGCCATTGCATCTTCTTCTCTGGCTACAGAGTGG
GTCAAAGGCCGAAATGTCGACGACGCCACAAAAATCAAGAACAGCGACAT
TGCGAAAGAGCTCAAATTGCCTCCCGTCAAGTTGCACTGCTCTATGCTTG
CAGAGGATGCCATCAAGGCTGCCATCAAGGATCTTAAAGATAAGCAAGGG
GGAGCCCAAAGTGCACCCAGCTCTTAG
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