Gvermi6976.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi6976.t1
Unique Name	Gvermi6976.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	655

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_24229	contig	ScGOVlb_24229:793900..795864 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	45157.CMQ173CT
Preferred name	TLK2
PFAMs	Pkinase
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K08864
GOs	GO:0003674,GO:0003824,GO:0004672,GO:0004674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009507,GO:0009536,GO:0009987,GO:0010468,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019222,GO:0019538,GO:0036211,GO:0042802,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0050789,GO:0050794,GO:0060147,GO:0060255,GO:0060966,GO:0060968,GO:0065007,GO:0071704,GO:0140096,GO:1900368,GO:1901564
Evalue	3.08e-125
EggNOG OGs	KOG1151@1\|root,KOG1151@2759\|Eukaryota
EC	2.7.11.1
Description	protein serine/threonine kinase activity
COG category	H
BRITE	ko00000,ko01000,ko01001

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi6976	Gvermi6976	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_24229 793900..795864 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6976.t1.stop1	Gvermi6976.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_24229 793900..793902 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6976.t1.CDS1	Gvermi6976.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_24229 793900..795864 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6976.t1.exon1	Gvermi6976.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_24229 793900..795864 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6976.t1.start1	Gvermi6976.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_24229 795862..795864 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6976.t1	Gvermi6976.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_24229 793900..795864 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_24229:793900..795864-
coding sequence from alignment at ScGOVlb_24229:793900..795864-

mRNA sequence

>Gvermi6976.t1 ID=Gvermi6976.t1|Name=Gvermi6976.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=655bp
MSTTEKIELTAAEDDQSSRRLRLLEARLSAAPTTPPQMRIAPNAPAAAPR
TPPPTDEVDDVRSFSSDSMSRPATPAPVTNNVRRKYAPAPKAKMKKRKRQ
STAFKSGRLDEFFKPVGDSPLRKKDVPVERSESPNQDDYAHLRGMIERLK
CDNEALRKAAGDADNLVAQNEDLRTQIEIEMPSLREQLEEREAELRRERD
CADRTKEELRSVLVSLARHERREAARKTTDDGERLGKQVVQRTRTSIHEA
WQDGYEWKQIQNDLKSIQDEKETLEKRRKELTKRRSQLQKKDNAQDGEMP
PPPPVLKTSVPFEDTIEYCQEMEDVCRVQMQVLKKQEGILLDKRQGMMKE
RDILIREMRRQSDERDSKFSQFPVLNERYQLLNLLGRGGFSEVFKAYDFR
SGAYVACKIHQLASNWKEEKKRSFIRHAMREYDIHKSLQHPRVVQLIDIF
EIDENTFCTVLEYCEGSDLDSYLRAHKTLPEKEARSIIAQVCSGLLYLAE
QERRIIHYDLKPGNILLHKGEVQITDFGLSKIMSEGSSTVDFMELTSQGA
GTMWYLPPECFDTGGNAKISVKVDVWSAGVILFQMLYGRKPFGHDQTQEK
MFREKTVQHQELQFPPKPQVSDLAKDFMAKCLTRKASSRPDVRQALMHPF
IRKR*

spliced messenger RNA

>Gvermi6976.t1 ID=Gvermi6976.t1|Name=Gvermi6976.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1965bp|location=Sequence derived from alignment at ScGOVlb_24229:793900..795864- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCACCACCGAGAAAATCGAGCTCACCGCAGCCGAGGACGATCAATC
CTCTCGTCGTCTTCGTCTTCTCGAGGCCCGCTTAAGCGCCGCGCCCACCA
CCCCACCCCAAATGCGCATCGCACCTAATGCGCCAGCTGCCGCGCCCCGG
ACCCCGCCTCCAACCGATGAGGTGGACGATGTCCGCAGTTTTTCTTCCGA
TTCCATGTCGCGGCCTGCAACTCCTGCCCCCGTCACCAATAACGTGCGCA
GAAAGTACGCACCAGCTCCGAAGGCAAAGATGAAAAAACGCAAGCGACAA
TCGACCGCTTTTAAATCTGGTAGACTTGACGAGTTTTTCAAGCCGGTGGG
CGACTCGCCCCTGCGCAAGAAGGACGTTCCTGTGGAGAGATCAGAGTCTC
CCAACCAAGATGACTACGCGCACTTGCGCGGTATGATAGAGCGCCTCAAG
TGCGACAACGAAGCTCTCAGAAAGGCTGCTGGTGATGCAGATAACTTGGT
TGCGCAGAATGAAGACTTGCGAACACAAATTGAGATCGAGATGCCCTCCC
TGCGTGAACAATTAGAGGAGCGCGAGGCAGAGCTTAGACGCGAGCGTGAT
TGCGCTGATCGCACCAAGGAGGAATTGCGTTCGGTTTTGGTTTCGTTGGC
GAGACACGAACGTCGAGAAGCCGCCCGAAAAACCACTGACGATGGCGAAC
GGCTTGGGAAGCAAGTTGTTCAGCGCACCAGGACTTCTATTCACGAAGCC
TGGCAAGATGGGTACGAATGGAAACAAATTCAGAATGATTTGAAATCGAT
ACAGGATGAAAAGGAAACCCTGGAGAAGAGGAGAAAAGAACTCACGAAGA
GACGGTCTCAATTGCAGAAAAAAGACAATGCGCAGGACGGAGAAATGCCT
CCGCCTCCACCCGTCCTCAAGACCAGCGTTCCCTTTGAAGATACGATTGA
GTATTGCCAGGAGATGGAAGACGTATGTCGCGTGCAGATGCAAGTGTTAA
AGAAGCAGGAAGGTATTCTGCTTGATAAGAGGCAGGGAATGATGAAGGAG
AGAGACATACTTATTCGTGAGATGAGACGCCAGTCGGACGAACGTGATTC
GAAGTTCTCGCAATTTCCTGTGCTAAATGAACGTTATCAACTTTTGAATC
TACTTGGGAGAGGAGGATTCAGCGAAGTTTTCAAAGCCTATGACTTTCGC
AGTGGAGCATATGTCGCATGCAAAATCCATCAACTTGCAAGCAACTGGAA
GGAGGAGAAAAAGCGTAGTTTCATAAGGCATGCAATGAGAGAATATGATA
TCCACAAATCGCTTCAACATCCGAGGGTGGTCCAACTCATAGATATATTT
GAAATCGATGAGAACACCTTTTGCACGGTATTAGAATATTGCGAAGGCAG
TGACCTAGATTCATATTTACGCGCCCACAAAACTCTCCCAGAGAAAGAAG
CCCGGTCAATTATTGCACAGGTGTGTTCTGGGTTGCTCTATCTCGCAGAA
CAAGAGCGGCGAATAATTCATTACGATCTCAAGCCCGGAAACATACTGCT
ACACAAAGGAGAAGTGCAAATCACGGACTTTGGTCTATCCAAGATAATGT
CTGAAGGCAGTTCTACGGTTGACTTCATGGAGCTGACCTCCCAAGGAGCT
GGAACAATGTGGTACCTTCCGCCTGAGTGCTTTGACACGGGTGGAAATGC
AAAAATCAGTGTCAAGGTTGACGTGTGGAGCGCAGGTGTTATCTTGTTTC
AAATGTTGTACGGAAGAAAGCCATTTGGTCATGATCAAACGCAGGAAAAG
ATGTTCCGCGAGAAAACCGTACAACATCAGGAATTACAATTTCCGCCAAA
ACCCCAAGTTTCAGATTTAGCCAAAGACTTTATGGCAAAGTGTCTAACGA
GGAAAGCGTCTTCGAGACCCGACGTTAGACAAGCCCTCATGCATCCATTC
ATCAGGAAGAGATAG

protein sequence of Gvermi6976.t1

>Gvermi6976.t1 ID=Gvermi6976.t1|Name=Gvermi6976.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=655bp
MSTTEKIELTAAEDDQSSRRLRLLEARLSAAPTTPPQMRIAPNAPAAAPR
TPPPTDEVDDVRSFSSDSMSRPATPAPVTNNVRRKYAPAPKAKMKKRKRQ
STAFKSGRLDEFFKPVGDSPLRKKDVPVERSESPNQDDYAHLRGMIERLK
CDNEALRKAAGDADNLVAQNEDLRTQIEIEMPSLREQLEEREAELRRERD
CADRTKEELRSVLVSLARHERREAARKTTDDGERLGKQVVQRTRTSIHEA
WQDGYEWKQIQNDLKSIQDEKETLEKRRKELTKRRSQLQKKDNAQDGEMP
PPPPVLKTSVPFEDTIEYCQEMEDVCRVQMQVLKKQEGILLDKRQGMMKE
RDILIREMRRQSDERDSKFSQFPVLNERYQLLNLLGRGGFSEVFKAYDFR
SGAYVACKIHQLASNWKEEKKRSFIRHAMREYDIHKSLQHPRVVQLIDIF
EIDENTFCTVLEYCEGSDLDSYLRAHKTLPEKEARSIIAQVCSGLLYLAE
QERRIIHYDLKPGNILLHKGEVQITDFGLSKIMSEGSSTVDFMELTSQGA
GTMWYLPPECFDTGGNAKISVKVDVWSAGVILFQMLYGRKPFGHDQTQEK
MFREKTVQHQELQFPPKPQVSDLAKDFMAKCLTRKASSRPDVRQALMHPF
IRKR*

mRNA from alignment at ScGOVlb_24229:793900..795864-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi6976.t1 ID=Gvermi6976.t1|Name=Gvermi6976.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1965bp|location=Sequence derived from alignment at ScGOVlb_24229:793900..795864- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAGCACCACCGAGAAAATCGAGCTCACCGCAGCCGAGGACGATCAATC
CTCTCGTCGTCTTCGTCTTCTCGAGGCCCGCTTAAGCGCCGCGCCCACCA
CCCCACCCCAAATGCGCATCGCACCTAATGCGCCAGCTGCCGCGCCCCGG
ACCCCGCCTCCAACCGATGAGGTGGACGATGTCCGCAGTTTTTCTTCCGA
TTCCATGTCGCGGCCTGCAACTCCTGCCCCCGTCACCAATAACGTGCGCA
GAAAGTACGCACCAGCTCCGAAGGCAAAGATGAAAAAACGCAAGCGACAA
TCGACCGCTTTTAAATCTGGTAGACTTGACGAGTTTTTCAAGCCGGTGGG
CGACTCGCCCCTGCGCAAGAAGGACGTTCCTGTGGAGAGATCAGAGTCTC
CCAACCAAGATGACTACGCGCACTTGCGCGGTATGATAGAGCGCCTCAAG
TGCGACAACGAAGCTCTCAGAAAGGCTGCTGGTGATGCAGATAACTTGGT
TGCGCAGAATGAAGACTTGCGAACACAAATTGAGATCGAGATGCCCTCCC
TGCGTGAACAATTAGAGGAGCGCGAGGCAGAGCTTAGACGCGAGCGTGAT
TGCGCTGATCGCACCAAGGAGGAATTGCGTTCGGTTTTGGTTTCGTTGGC
GAGACACGAACGTCGAGAAGCCGCCCGAAAAACCACTGACGATGGCGAAC
GGCTTGGGAAGCAAGTTGTTCAGCGCACCAGGACTTCTATTCACGAAGCC
TGGCAAGATGGGTACGAATGGAAACAAATTCAGAATGATTTGAAATCGAT
ACAGGATGAAAAGGAAACCCTGGAGAAGAGGAGAAAAGAACTCACGAAGA
GACGGTCTCAATTGCAGAAAAAAGACAATGCGCAGGACGGAGAAATGCCT
CCGCCTCCACCCGTCCTCAAGACCAGCGTTCCCTTTGAAGATACGATTGA
GTATTGCCAGGAGATGGAAGACGTATGTCGCGTGCAGATGCAAGTGTTAA
AGAAGCAGGAAGGTATTCTGCTTGATAAGAGGCAGGGAATGATGAAGGAG
AGAGACATACTTATTCGTGAGATGAGACGCCAGTCGGACGAACGTGATTC
GAAGTTCTCGCAATTTCCTGTGCTAAATGAACGTTATCAACTTTTGAATC
TACTTGGGAGAGGAGGATTCAGCGAAGTTTTCAAAGCCTATGACTTTCGC
AGTGGAGCATATGTCGCATGCAAAATCCATCAACTTGCAAGCAACTGGAA
GGAGGAGAAAAAGCGTAGTTTCATAAGGCATGCAATGAGAGAATATGATA
TCCACAAATCGCTTCAACATCCGAGGGTGGTCCAACTCATAGATATATTT
GAAATCGATGAGAACACCTTTTGCACGGTATTAGAATATTGCGAAGGCAG
TGACCTAGATTCATATTTACGCGCCCACAAAACTCTCCCAGAGAAAGAAG
CCCGGTCAATTATTGCACAGGTGTGTTCTGGGTTGCTCTATCTCGCAGAA
CAAGAGCGGCGAATAATTCATTACGATCTCAAGCCCGGAAACATACTGCT
ACACAAAGGAGAAGTGCAAATCACGGACTTTGGTCTATCCAAGATAATGT
CTGAAGGCAGTTCTACGGTTGACTTCATGGAGCTGACCTCCCAAGGAGCT
GGAACAATGTGGTACCTTCCGCCTGAGTGCTTTGACACGGGTGGAAATGC
AAAAATCAGTGTCAAGGTTGACGTGTGGAGCGCAGGTGTTATCTTGTTTC
AAATGTTGTACGGAAGAAAGCCATTTGGTCATGATCAAACGCAGGAAAAG
ATGTTCCGCGAGAAAACCGTACAACATCAGGAATTACAATTTCCGCCAAA
ACCCCAAGTTTCAGATTTAGCCAAAGACTTTATGGCAAAGTGTCTAACGA
GGAAAGCGTCTTCGAGACCCGACGTTAGACAAGCCCTCATGCATCCATTC
ATCAGGAAGAGATAG

Coding sequence (CDS) from alignment at ScGOVlb_24229:793900..795864-

>Gvermi6976.t1 ID=Gvermi6976.t1|Name=Gvermi6976.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1965bp|location=Sequence derived from alignment at ScGOVlb_24229:793900..795864- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAGCACCACCGAGAAAATCGAGCTCACCGCAGCCGAGGACGATCAATC
CTCTCGTCGTCTTCGTCTTCTCGAGGCCCGCTTAAGCGCCGCGCCCACCA
CCCCACCCCAAATGCGCATCGCACCTAATGCGCCAGCTGCCGCGCCCCGG
ACCCCGCCTCCAACCGATGAGGTGGACGATGTCCGCAGTTTTTCTTCCGA
TTCCATGTCGCGGCCTGCAACTCCTGCCCCCGTCACCAATAACGTGCGCA
GAAAGTACGCACCAGCTCCGAAGGCAAAGATGAAAAAACGCAAGCGACAA
TCGACCGCTTTTAAATCTGGTAGACTTGACGAGTTTTTCAAGCCGGTGGG
CGACTCGCCCCTGCGCAAGAAGGACGTTCCTGTGGAGAGATCAGAGTCTC
CCAACCAAGATGACTACGCGCACTTGCGCGGTATGATAGAGCGCCTCAAG
TGCGACAACGAAGCTCTCAGAAAGGCTGCTGGTGATGCAGATAACTTGGT
TGCGCAGAATGAAGACTTGCGAACACAAATTGAGATCGAGATGCCCTCCC
TGCGTGAACAATTAGAGGAGCGCGAGGCAGAGCTTAGACGCGAGCGTGAT
TGCGCTGATCGCACCAAGGAGGAATTGCGTTCGGTTTTGGTTTCGTTGGC
GAGACACGAACGTCGAGAAGCCGCCCGAAAAACCACTGACGATGGCGAAC
GGCTTGGGAAGCAAGTTGTTCAGCGCACCAGGACTTCTATTCACGAAGCC
TGGCAAGATGGGTACGAATGGAAACAAATTCAGAATGATTTGAAATCGAT
ACAGGATGAAAAGGAAACCCTGGAGAAGAGGAGAAAAGAACTCACGAAGA
GACGGTCTCAATTGCAGAAAAAAGACAATGCGCAGGACGGAGAAATGCCT
CCGCCTCCACCCGTCCTCAAGACCAGCGTTCCCTTTGAAGATACGATTGA
GTATTGCCAGGAGATGGAAGACGTATGTCGCGTGCAGATGCAAGTGTTAA
AGAAGCAGGAAGGTATTCTGCTTGATAAGAGGCAGGGAATGATGAAGGAG
AGAGACATACTTATTCGTGAGATGAGACGCCAGTCGGACGAACGTGATTC
GAAGTTCTCGCAATTTCCTGTGCTAAATGAACGTTATCAACTTTTGAATC
TACTTGGGAGAGGAGGATTCAGCGAAGTTTTCAAAGCCTATGACTTTCGC
AGTGGAGCATATGTCGCATGCAAAATCCATCAACTTGCAAGCAACTGGAA
GGAGGAGAAAAAGCGTAGTTTCATAAGGCATGCAATGAGAGAATATGATA
TCCACAAATCGCTTCAACATCCGAGGGTGGTCCAACTCATAGATATATTT
GAAATCGATGAGAACACCTTTTGCACGGTATTAGAATATTGCGAAGGCAG
TGACCTAGATTCATATTTACGCGCCCACAAAACTCTCCCAGAGAAAGAAG
CCCGGTCAATTATTGCACAGGTGTGTTCTGGGTTGCTCTATCTCGCAGAA
CAAGAGCGGCGAATAATTCATTACGATCTCAAGCCCGGAAACATACTGCT
ACACAAAGGAGAAGTGCAAATCACGGACTTTGGTCTATCCAAGATAATGT
CTGAAGGCAGTTCTACGGTTGACTTCATGGAGCTGACCTCCCAAGGAGCT
GGAACAATGTGGTACCTTCCGCCTGAGTGCTTTGACACGGGTGGAAATGC
AAAAATCAGTGTCAAGGTTGACGTGTGGAGCGCAGGTGTTATCTTGTTTC
AAATGTTGTACGGAAGAAAGCCATTTGGTCATGATCAAACGCAGGAAAAG
ATGTTCCGCGAGAAAACCGTACAACATCAGGAATTACAATTTCCGCCAAA
ACCCCAAGTTTCAGATTTAGCCAAAGACTTTATGGCAAAGTGTCTAACGA
GGAAAGCGTCTTCGAGACCCGACGTTAGACAAGCCCTCATGCATCCATTC
ATCAGGAAGAGATAG