Gvermi6974.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi6974.t1
Unique NameGvermi6974.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length337
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24229contigScGOVlb_24229:789762..790772 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog112098.XP_008605809.1
PFAMsMg_trans_NIPA
Max annot lvl2759|Eukaryota
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005769,GO:0005886,GO:0006810,GO:0006811,GO:0006812,GO:0008150,GO:0012505,GO:0015693,GO:0016020,GO:0030001,GO:0031410,GO:0031982,GO:0043226,GO:0043227,GO:0043229,GO:0044424,GO:0044444,GO:0044464,GO:0051179,GO:0051234,GO:0070838,GO:0071944,GO:0072511,GO:0097708
Evalue1.23e-23
EggNOG OGsKOG2922@1|root,KOG2922@2759|Eukaryota
Descriptionmagnesium ion transmembrane transporter activity
COG categoryU
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi6974Gvermi6974Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_24229 789762..790772 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6974.t1.stop1Gvermi6974.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_24229 789762..789764 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6974.t1.CDS1Gvermi6974.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24229 789762..790772 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6974.t1.exon1Gvermi6974.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24229 789762..790772 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6974.t1.start1Gvermi6974.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_24229 790770..790772 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6974.t1Gvermi6974.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_24229 789762..790772 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi6974.t1 ID=Gvermi6974.t1|Name=Gvermi6974.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=337bp
MTVAALQPFPDLAPMTAPWSIGLMLAMAGYTMCGAGMNLIKLSHIKRGTA
GGSTVLRSTPFNRRSSAAHATLLWLCGYGVNSLGGVLNTAGLRFAAQSLI
APLSSMALVVNAVFATFVLGERLGLRDVLPMSLIAFGNIIAVASANHAEQ
RGLTLLEISQLFRRSSFQVYLVTVLVLASLLMLIRGRIRRRIRKCGGEEL
ASPSLVAYAGLCHAAAAAMLSVNTVFLSKASLLALTDGLHNALKPQFVAL
ILTWLSLVSFWIYTLNRLLASHDILFIVPAIEVLWSLCSMIGGGIFFDEY
SSMTVSRRVSFAAGVVINLTGVFILSRRGEKGNKLG*
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spliced messenger RNA

>Gvermi6974.t1 ID=Gvermi6974.t1|Name=Gvermi6974.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1011bp|location=Sequence derived from alignment at ScGOVlb_24229:789762..790772- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACCGTCGCTGCCTTGCAACCATTCCCGGACCTTGCGCCTATGACCGC
CCCATGGTCAATCGGCCTCATGCTGGCAATGGCGGGCTACACCATGTGCG
GTGCCGGCATGAATCTCATCAAACTCTCCCACATCAAGCGCGGAACCGCC
GGCGGTAGCACCGTGCTTCGTTCAACTCCATTTAACCGTCGTTCTTCCGC
TGCGCACGCCACGCTGCTGTGGTTGTGCGGCTACGGCGTGAATTCGCTCG
GCGGGGTGCTCAACACGGCCGGCCTCCGCTTCGCCGCGCAGAGTTTGATT
GCGCCGCTCAGCAGCATGGCGCTCGTGGTCAACGCCGTGTTTGCCACGTT
TGTGCTGGGCGAACGTCTTGGTCTTCGAGACGTTCTGCCCATGTCGCTTA
TTGCGTTTGGAAACATTATAGCCGTTGCGAGCGCCAATCATGCGGAGCAG
CGCGGGCTGACACTGCTCGAGATTTCGCAGCTGTTTCGTCGCTCTTCATT
TCAGGTCTACCTAGTCACCGTTCTCGTGCTGGCGTCGCTGCTCATGCTCA
TTCGCGGCAGGATTCGACGCAGAATACGAAAGTGCGGCGGCGAAGAACTG
GCCAGTCCGTCGTTGGTGGCGTATGCGGGACTGTGCCACGCCGCAGCTGC
TGCCATGCTTAGCGTGAATACAGTGTTCTTGTCCAAGGCCAGCCTCCTGG
CGCTAACCGACGGATTACACAATGCGCTCAAACCGCAGTTTGTAGCGCTC
ATTCTCACCTGGCTCTCATTGGTTTCCTTCTGGATTTACACGCTGAACCG
TTTGTTGGCCAGTCACGACATTCTGTTCATCGTCCCTGCCATTGAGGTTT
TGTGGAGTTTATGCTCAATGATAGGGGGTGGAATCTTCTTCGATGAGTAC
TCGTCCATGACAGTATCTAGAAGAGTGTCATTTGCCGCCGGCGTGGTCAT
CAACCTCACAGGGGTATTCATCCTGTCACGGAGAGGAGAGAAGGGAAACA
AACTAGGATGA
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protein sequence of Gvermi6974.t1

>Gvermi6974.t1 ID=Gvermi6974.t1|Name=Gvermi6974.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=337bp
MTVAALQPFPDLAPMTAPWSIGLMLAMAGYTMCGAGMNLIKLSHIKRGTA
GGSTVLRSTPFNRRSSAAHATLLWLCGYGVNSLGGVLNTAGLRFAAQSLI
APLSSMALVVNAVFATFVLGERLGLRDVLPMSLIAFGNIIAVASANHAEQ
RGLTLLEISQLFRRSSFQVYLVTVLVLASLLMLIRGRIRRRIRKCGGEEL
ASPSLVAYAGLCHAAAAAMLSVNTVFLSKASLLALTDGLHNALKPQFVAL
ILTWLSLVSFWIYTLNRLLASHDILFIVPAIEVLWSLCSMIGGGIFFDEY
SSMTVSRRVSFAAGVVINLTGVFILSRRGEKGNKLG*
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mRNA from alignment at ScGOVlb_24229:789762..790772-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi6974.t1 ID=Gvermi6974.t1|Name=Gvermi6974.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1011bp|location=Sequence derived from alignment at ScGOVlb_24229:789762..790772- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGACCGTCGCTGCCTTGCAACCATTCCCGGACCTTGCGCCTATGACCGC
CCCATGGTCAATCGGCCTCATGCTGGCAATGGCGGGCTACACCATGTGCG
GTGCCGGCATGAATCTCATCAAACTCTCCCACATCAAGCGCGGAACCGCC
GGCGGTAGCACCGTGCTTCGTTCAACTCCATTTAACCGTCGTTCTTCCGC
TGCGCACGCCACGCTGCTGTGGTTGTGCGGCTACGGCGTGAATTCGCTCG
GCGGGGTGCTCAACACGGCCGGCCTCCGCTTCGCCGCGCAGAGTTTGATT
GCGCCGCTCAGCAGCATGGCGCTCGTGGTCAACGCCGTGTTTGCCACGTT
TGTGCTGGGCGAACGTCTTGGTCTTCGAGACGTTCTGCCCATGTCGCTTA
TTGCGTTTGGAAACATTATAGCCGTTGCGAGCGCCAATCATGCGGAGCAG
CGCGGGCTGACACTGCTCGAGATTTCGCAGCTGTTTCGTCGCTCTTCATT
TCAGGTCTACCTAGTCACCGTTCTCGTGCTGGCGTCGCTGCTCATGCTCA
TTCGCGGCAGGATTCGACGCAGAATACGAAAGTGCGGCGGCGAAGAACTG
GCCAGTCCGTCGTTGGTGGCGTATGCGGGACTGTGCCACGCCGCAGCTGC
TGCCATGCTTAGCGTGAATACAGTGTTCTTGTCCAAGGCCAGCCTCCTGG
CGCTAACCGACGGATTACACAATGCGCTCAAACCGCAGTTTGTAGCGCTC
ATTCTCACCTGGCTCTCATTGGTTTCCTTCTGGATTTACACGCTGAACCG
TTTGTTGGCCAGTCACGACATTCTGTTCATCGTCCCTGCCATTGAGGTTT
TGTGGAGTTTATGCTCAATGATAGGGGGTGGAATCTTCTTCGATGAGTAC
TCGTCCATGACAGTATCTAGAAGAGTGTCATTTGCCGCCGGCGTGGTCAT
CAACCTCACAGGGGTATTCATCCTGTCACGGAGAGGAGAGAAGGGAAACA
AACTAGGATGA
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Coding sequence (CDS) from alignment at ScGOVlb_24229:789762..790772-

>Gvermi6974.t1 ID=Gvermi6974.t1|Name=Gvermi6974.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1011bp|location=Sequence derived from alignment at ScGOVlb_24229:789762..790772- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGACCGTCGCTGCCTTGCAACCATTCCCGGACCTTGCGCCTATGACCGC
CCCATGGTCAATCGGCCTCATGCTGGCAATGGCGGGCTACACCATGTGCG
GTGCCGGCATGAATCTCATCAAACTCTCCCACATCAAGCGCGGAACCGCC
GGCGGTAGCACCGTGCTTCGTTCAACTCCATTTAACCGTCGTTCTTCCGC
TGCGCACGCCACGCTGCTGTGGTTGTGCGGCTACGGCGTGAATTCGCTCG
GCGGGGTGCTCAACACGGCCGGCCTCCGCTTCGCCGCGCAGAGTTTGATT
GCGCCGCTCAGCAGCATGGCGCTCGTGGTCAACGCCGTGTTTGCCACGTT
TGTGCTGGGCGAACGTCTTGGTCTTCGAGACGTTCTGCCCATGTCGCTTA
TTGCGTTTGGAAACATTATAGCCGTTGCGAGCGCCAATCATGCGGAGCAG
CGCGGGCTGACACTGCTCGAGATTTCGCAGCTGTTTCGTCGCTCTTCATT
TCAGGTCTACCTAGTCACCGTTCTCGTGCTGGCGTCGCTGCTCATGCTCA
TTCGCGGCAGGATTCGACGCAGAATACGAAAGTGCGGCGGCGAAGAACTG
GCCAGTCCGTCGTTGGTGGCGTATGCGGGACTGTGCCACGCCGCAGCTGC
TGCCATGCTTAGCGTGAATACAGTGTTCTTGTCCAAGGCCAGCCTCCTGG
CGCTAACCGACGGATTACACAATGCGCTCAAACCGCAGTTTGTAGCGCTC
ATTCTCACCTGGCTCTCATTGGTTTCCTTCTGGATTTACACGCTGAACCG
TTTGTTGGCCAGTCACGACATTCTGTTCATCGTCCCTGCCATTGAGGTTT
TGTGGAGTTTATGCTCAATGATAGGGGGTGGAATCTTCTTCGATGAGTAC
TCGTCCATGACAGTATCTAGAAGAGTGTCATTTGCCGCCGGCGTGGTCAT
CAACCTCACAGGGGTATTCATCCTGTCACGGAGAGGAGAGAAGGGAAACA
AACTAGGATGA
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