Gvermi6967.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi6967.t1
Unique NameGvermi6967.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length375
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24229contigScGOVlb_24229:774766..775967 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005709337.1
PFAMsActin
Max annot lvl2759|Eukaryota
KEGG koko:K05692
KEGG Pathwayko04015,ko04145,ko04210,ko04390,ko04391,ko04510,ko04520,ko04530,ko04611,ko04670,ko04714,ko04745,ko04810,ko04919,ko04921,ko05100,ko05110,ko05130,ko05131,ko05132,ko05164,ko05205,ko05225,ko05410,ko05412,ko05414,ko05416,ko05418,map04015,map04145,map04210,map04390,map04391,map04510,map04520,map04530,map04611,map04670,map04714,map04745,map04810,map04919,map04921,map05100,map05110,map05130,map05131,map05132,map05164,map05205,map05225,map05410,map05412,map05414,map05416,map05418
Evalue2.15e-230
EggNOG OGsCOG5277@1|root,KOG0676@2759|Eukaryota
DescriptionATP binding
COG categoryZ
BRITEko00000,ko00001,ko03019,ko03021,ko03029,ko03036,ko04147,ko04812
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi6967Gvermi6967Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_24229 774766..775967 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6967.t1Gvermi6967.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_24229 774766..775967 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6967.t1.stop1Gvermi6967.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_24229 774766..774768 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6967.t1.CDS1Gvermi6967.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24229 774766..775770 -
Gvermi6967.t1.CDS2Gvermi6967.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24229 775848..775967 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6967.t1.exon1Gvermi6967.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24229 774766..775770 -
Gvermi6967.t1.exon2Gvermi6967.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24229 775848..775967 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6967.t1.intron1Gvermi6967.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_24229 775771..775847 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6967.t1.start1Gvermi6967.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_24229 775965..775967 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi6967.t1 ID=Gvermi6967.t1|Name=Gvermi6967.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=375bp
MQFKPAVVIDNGSGRCKTGLAGEDAPKAVFPAVIGKPKQKGIMVGSGTKD
EYVGDGAMARRGVLIIKYPLEHGIVTNWDDMEKIWHHAFYSELRVDPQEH
PVLLTEAPLNPKANRERMTQIMFESFSIPAFYVAIQAVLSLYASGRTSGI
VVDSGDGVTHTVPIYEGYSLPHAVLRIDLAGRDLTEWMAKLLQQRGYSFT
TSAEKEIVRDIKQQLCYVSEDYEKELANADTNSALEKEYELPDGQTITVA
AERFQCPEALFKPELLGNEMSGMHKTAYDSIMKTDIDIRKDLYNNIVMSG
GTTMFKGIASRVQKELETLAPPSMKIKVVAPPERQYSVWIGGSILSSLST
FQQMWVSKAEYDEMGPSVVHRKCF*
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spliced messenger RNA

>Gvermi6967.t1 ID=Gvermi6967.t1|Name=Gvermi6967.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1125bp|location=Sequence derived from alignment at ScGOVlb_24229:774766..775967- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAGTTCAAGCCCGCCGTCGTAATTGACAATGGCTCCGGTCGATGCAA
GACTGGCCTTGCCGGTGAGGATGCCCCCAAGGCTGTCTTCCCGGCTGTCA
TTGGCAAGCCCAAACAGAAGGGTATCATGGTTGGATCTGGCACCAAGGAC
GAATACGTCGGCGATGGCGCCATGGCTCGTCGTGGTGTCCTCATCATCAA
ATACCCTCTTGAGCACGGTATCGTCACCAATTGGGACGATATGGAAAAGA
TCTGGCATCATGCCTTCTATTCAGAACTACGCGTCGATCCCCAGGAGCAC
CCTGTCCTGCTTACAGAGGCTCCTCTCAACCCGAAGGCCAATCGCGAGCG
TATGACCCAGATCATGTTTGAGTCCTTCTCTATCCCGGCCTTCTACGTCG
CCATCCAGGCTGTGCTGTCTCTCTATGCCTCTGGACGTACATCTGGTATT
GTCGTTGATTCCGGAGATGGTGTCACTCATACTGTTCCCATCTATGAGGG
ATACTCCCTTCCCCATGCTGTCCTGCGTATCGATCTTGCCGGTCGCGATC
TTACTGAGTGGATGGCTAAACTTTTGCAACAGCGTGGCTATTCATTCACT
ACTTCTGCTGAAAAGGAAATTGTCCGTGACATTAAGCAGCAGCTTTGCTA
TGTTTCCGAGGACTATGAGAAGGAATTGGCTAATGCTGACACTAACTCAG
CTCTTGAGAAGGAATACGAGCTTCCCGATGGTCAGACTATCACTGTCGCT
GCTGAGCGTTTCCAGTGCCCTGAAGCGTTGTTCAAACCTGAACTCCTTGG
AAACGAAATGTCAGGCATGCACAAGACCGCTTACGATTCCATCATGAAAA
CTGACATTGATATCCGTAAGGATCTCTACAACAACATTGTCATGTCCGGT
GGTACCACCATGTTCAAAGGCATTGCCTCCCGTGTTCAAAAGGAACTGGA
AACTCTTGCCCCTCCGTCTATGAAGATTAAGGTGGTTGCCCCACCGGAGC
GTCAGTACTCTGTCTGGATTGGTGGTTCCATTCTTTCCTCTCTGTCTACC
TTCCAGCAGATGTGGGTCTCCAAGGCCGAATATGACGAAATGGGCCCGTC
GGTTGTTCACCGCAAGTGCTTCTAA
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protein sequence of Gvermi6967.t1

>Gvermi6967.t1 ID=Gvermi6967.t1|Name=Gvermi6967.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=375bp
MQFKPAVVIDNGSGRCKTGLAGEDAPKAVFPAVIGKPKQKGIMVGSGTKD
EYVGDGAMARRGVLIIKYPLEHGIVTNWDDMEKIWHHAFYSELRVDPQEH
PVLLTEAPLNPKANRERMTQIMFESFSIPAFYVAIQAVLSLYASGRTSGI
VVDSGDGVTHTVPIYEGYSLPHAVLRIDLAGRDLTEWMAKLLQQRGYSFT
TSAEKEIVRDIKQQLCYVSEDYEKELANADTNSALEKEYELPDGQTITVA
AERFQCPEALFKPELLGNEMSGMHKTAYDSIMKTDIDIRKDLYNNIVMSG
GTTMFKGIASRVQKELETLAPPSMKIKVVAPPERQYSVWIGGSILSSLST
FQQMWVSKAEYDEMGPSVVHRKCF*
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mRNA from alignment at ScGOVlb_24229:774766..775967-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi6967.t1 ID=Gvermi6967.t1|Name=Gvermi6967.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1202bp|location=Sequence derived from alignment at ScGOVlb_24229:774766..775967- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCAGTTCAAGCCCGCCGTCGTAATTGACAATGGCTCCGGTCGATGCAA
GACTGGCCTTGCCGGTGAGGATGCCCCCAAGGCTGTCTTCCCGGCTGTCA
TTGGCAAGCCCAAACAGAAGGTACGTCCCTACCACCCAGCCGTCAGTCTC
TTCTGCCCTTCTCACTGCTAACTCAACACCTCTCTTTCGGAATGCAGGGT
ATCATGGTTGGATCTGGCACCAAGGACGAATACGTCGGCGATGGCGCCAT
GGCTCGTCGTGGTGTCCTCATCATCAAATACCCTCTTGAGCACGGTATCG
TCACCAATTGGGACGATATGGAAAAGATCTGGCATCATGCCTTCTATTCA
GAACTACGCGTCGATCCCCAGGAGCACCCTGTCCTGCTTACAGAGGCTCC
TCTCAACCCGAAGGCCAATCGCGAGCGTATGACCCAGATCATGTTTGAGT
CCTTCTCTATCCCGGCCTTCTACGTCGCCATCCAGGCTGTGCTGTCTCTC
TATGCCTCTGGACGTACATCTGGTATTGTCGTTGATTCCGGAGATGGTGT
CACTCATACTGTTCCCATCTATGAGGGATACTCCCTTCCCCATGCTGTCC
TGCGTATCGATCTTGCCGGTCGCGATCTTACTGAGTGGATGGCTAAACTT
TTGCAACAGCGTGGCTATTCATTCACTACTTCTGCTGAAAAGGAAATTGT
CCGTGACATTAAGCAGCAGCTTTGCTATGTTTCCGAGGACTATGAGAAGG
AATTGGCTAATGCTGACACTAACTCAGCTCTTGAGAAGGAATACGAGCTT
CCCGATGGTCAGACTATCACTGTCGCTGCTGAGCGTTTCCAGTGCCCTGA
AGCGTTGTTCAAACCTGAACTCCTTGGAAACGAAATGTCAGGCATGCACA
AGACCGCTTACGATTCCATCATGAAAACTGACATTGATATCCGTAAGGAT
CTCTACAACAACATTGTCATGTCCGGTGGTACCACCATGTTCAAAGGCAT
TGCCTCCCGTGTTCAAAAGGAACTGGAAACTCTTGCCCCTCCGTCTATGA
AGATTAAGGTGGTTGCCCCACCGGAGCGTCAGTACTCTGTCTGGATTGGT
GGTTCCATTCTTTCCTCTCTGTCTACCTTCCAGCAGATGTGGGTCTCCAA
GGCCGAATATGACGAAATGGGCCCGTCGGTTGTTCACCGCAAGTGCTTCT
AA
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Coding sequence (CDS) from alignment at ScGOVlb_24229:774766..775967-

>Gvermi6967.t1 ID=Gvermi6967.t1|Name=Gvermi6967.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1125bp|location=Sequence derived from alignment at ScGOVlb_24229:774766..775967- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCAGTTCAAGCCCGCCGTCGTAATTGACAATGGCTCCGGTCGATGCAA
GACTGGCCTTGCCGGTGAGGATGCCCCCAAGGCTGTCTTCCCGGCTGTCA
TTGGCAAGCCCAAACAGAAGGGTATCATGGTTGGATCTGGCACCAAGGAC
GAATACGTCGGCGATGGCGCCATGGCTCGTCGTGGTGTCCTCATCATCAA
ATACCCTCTTGAGCACGGTATCGTCACCAATTGGGACGATATGGAAAAGA
TCTGGCATCATGCCTTCTATTCAGAACTACGCGTCGATCCCCAGGAGCAC
CCTGTCCTGCTTACAGAGGCTCCTCTCAACCCGAAGGCCAATCGCGAGCG
TATGACCCAGATCATGTTTGAGTCCTTCTCTATCCCGGCCTTCTACGTCG
CCATCCAGGCTGTGCTGTCTCTCTATGCCTCTGGACGTACATCTGGTATT
GTCGTTGATTCCGGAGATGGTGTCACTCATACTGTTCCCATCTATGAGGG
ATACTCCCTTCCCCATGCTGTCCTGCGTATCGATCTTGCCGGTCGCGATC
TTACTGAGTGGATGGCTAAACTTTTGCAACAGCGTGGCTATTCATTCACT
ACTTCTGCTGAAAAGGAAATTGTCCGTGACATTAAGCAGCAGCTTTGCTA
TGTTTCCGAGGACTATGAGAAGGAATTGGCTAATGCTGACACTAACTCAG
CTCTTGAGAAGGAATACGAGCTTCCCGATGGTCAGACTATCACTGTCGCT
GCTGAGCGTTTCCAGTGCCCTGAAGCGTTGTTCAAACCTGAACTCCTTGG
AAACGAAATGTCAGGCATGCACAAGACCGCTTACGATTCCATCATGAAAA
CTGACATTGATATCCGTAAGGATCTCTACAACAACATTGTCATGTCCGGT
GGTACCACCATGTTCAAAGGCATTGCCTCCCGTGTTCAAAAGGAACTGGA
AACTCTTGCCCCTCCGTCTATGAAGATTAAGGTGGTTGCCCCACCGGAGC
GTCAGTACTCTGTCTGGATTGGTGGTTCCATTCTTTCCTCTCTGTCTACC
TTCCAGCAGATGTGGGTCTCCAAGGCCGAATATGACGAAATGGGCCCGTC
GGTTGTTCACCGCAAGTGCTTCTAA
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