Gvermi6965.t2 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi6965.t2
Unique Name	Gvermi6965.t2
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	774

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_24229	contig	ScGOVlb_24229:769980..772301 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi6965	Gvermi6965	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_24229 769980..772301 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6965.t2.start1	Gvermi6965.t2.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_24229 769980..769982 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6965.t2.CDS1	Gvermi6965.t2.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_24229 769980..772301 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6965.t2.exon1	Gvermi6965.t2.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_24229 769980..772301 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6965.t2.stop1	Gvermi6965.t2.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_24229 772299..772301 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6965.t2	Gvermi6965.t2	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_24229 769980..772301 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_24229:769980..772301+
coding sequence from alignment at ScGOVlb_24229:769980..772301+

mRNA sequence

>Gvermi6965.t2 ID=Gvermi6965.t2|Name=Gvermi6965.t2|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=774bp
MSSNSGEDHWFWDGKGMPDNKHDRRRVFHKSVALRHASDGRTRHFKVGDT
VNMAGEGEVWVAQIIELFQVTAHDPELRHILRADSVRNESKRHYELKRCT
LRWFYNYSDMIPDTLKDSRWPKRLDDEIWFSDHIEKTGYNSVQVIDGRAW
LFDNLREKSEFLVNLPEEYDKERDIVRIVRGFVDSKHDHLPVRLLLDGEL
KWLKENPSDDPKLFHNSKRRLESIAQSSPSRKRQKNRHSSTLRSPVNVNE
DEFDPADRKSKSARRKTRSLERDRDNVGDDVSKIRRPIRRRKITIDDDDE
SASKQEDDDESDNIPLDQLTPITHNFTPQPNLSDQPENIDLVNDEVRDLV
ESLNASVYENDAHEPQTRSPEKLVTEAPQYVGEDEITPAPSTRVTKRKSL
ASRSKANTAIASRIKQTTPKPSSPSTNDHGIIVIDSDDDGQPQKPVSKAT
SPKLQRFHPGAASRAYRGGRHGKPSARSRSSFMPTSRERQAVSSKRQSNA
GGDELQKSPSVVETDKVTEGKRSSKQIDAKAEDRGRLKEGKSLNVKEGLN
SNSVLKTTTLSDGDDGSPVIVSNNNMEVGQKKPDAGDVIDLQRKDGKRGS
LQAARKKSKDTASPSNRAQIAGILTDTRMEDVARLSIEGKFGKVQEMSGA
KQAGSSNVIEVNDSDAEPDDRGLQEEELSVLKPTQAQRKLTEDIYRIQSC
MNDVDKNFISDKLEWLLDEIVHFHDGRKGSLDAAEYVRVLRDQLVQRRLQ
EIGSIREIPDFKSDPQLKARERL*

spliced messenger RNA

>Gvermi6965.t2 ID=Gvermi6965.t2|Name=Gvermi6965.t2|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=2322bp|location=Sequence derived from alignment at ScGOVlb_24229:769980..772301+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCCTCCAATTCAGGCGAAGATCACTGGTTCTGGGATGGAAAGGGCAT
GCCAGACAACAAACACGACCGTCGCCGCGTTTTTCATAAATCTGTGGCAT
TGAGACATGCGTCAGATGGCCGCACGCGCCACTTCAAGGTTGGTGACACT
GTGAACATGGCAGGTGAAGGGGAGGTATGGGTAGCGCAGATTATTGAACT
TTTCCAAGTAACTGCGCATGACCCAGAGCTTCGGCACATCTTGCGCGCAG
ACAGCGTCAGGAACGAATCAAAGCGTCACTATGAGCTTAAGAGATGCACT
TTGCGCTGGTTCTACAATTATAGCGACATGATCCCGGACACTCTGAAAGA
TTCGAGATGGCCAAAACGACTTGATGATGAGATCTGGTTTTCTGATCATA
TCGAAAAGACTGGCTACAATAGTGTACAAGTCATCGATGGAAGGGCATGG
CTCTTCGACAATTTGCGAGAGAAAAGTGAATTTCTTGTCAATCTTCCTGA
GGAATATGATAAAGAACGGGATATAGTTCGGATTGTACGCGGATTCGTCG
ACTCAAAACACGACCATTTACCCGTTCGCTTACTTCTTGATGGAGAACTC
AAGTGGTTGAAGGAAAATCCATCCGACGACCCGAAGTTGTTTCACAATTC
TAAGCGTCGGCTGGAGAGCATTGCCCAATCCTCGCCTTCACGAAAGCGCC
AAAAGAACAGACACTCATCAACATTGCGCTCACCCGTCAATGTCAATGAG
GATGAGTTTGATCCGGCGGATAGAAAGTCTAAGAGTGCGAGACGAAAAAC
TCGATCGCTAGAAAGAGATAGAGATAATGTGGGAGACGACGTTTCTAAAA
TCAGGCGTCCAATCCGCAGGAGAAAAATAACCATCGATGATGATGATGAA
TCTGCATCCAAACAGGAGGACGATGACGAAAGCGACAACATTCCCCTCGA
CCAACTCACACCTATAACGCACAATTTCACACCTCAGCCAAATCTTTCTG
ACCAGCCAGAGAACATTGACCTAGTGAACGATGAAGTACGGGACCTCGTT
GAAAGCTTGAACGCCTCTGTGTATGAAAATGATGCTCATGAACCGCAGAC
CAGGTCTCCGGAGAAACTAGTAACGGAAGCTCCCCAATACGTAGGTGAGG
ATGAAATAACACCAGCCCCTTCGACGCGTGTAACTAAACGGAAATCTCTC
GCTTCGAGGTCCAAAGCGAACACCGCCATAGCCTCGAGAATCAAGCAGAC
AACTCCGAAGCCAAGCTCCCCATCAACAAATGATCATGGAATAATAGTAA
TCGATAGTGATGATGACGGACAGCCGCAAAAGCCTGTTTCGAAAGCAACA
TCACCAAAATTGCAACGCTTTCATCCAGGCGCTGCGAGTCGTGCGTATAG
AGGGGGACGACATGGGAAACCGTCTGCGAGGAGTCGTTCGTCGTTTATGC
CTACCTCGAGAGAACGCCAAGCCGTATCCTCTAAGCGACAAAGCAATGCT
GGTGGGGATGAACTCCAGAAGAGCCCATCTGTCGTCGAAACCGATAAAGT
TACGGAAGGCAAACGGTCGTCGAAACAAATAGATGCGAAAGCGGAAGACC
GGGGTCGTCTCAAGGAAGGGAAGTCTTTAAATGTGAAAGAAGGACTGAAT
TCCAATTCAGTTTTGAAGACTACTACGCTTAGCGACGGTGATGATGGCAG
CCCAGTCATTGTGTCAAATAATAATATGGAAGTGGGACAGAAAAAGCCAG
ACGCGGGAGATGTTATTGACCTCCAACGCAAAGACGGGAAGCGTGGGTCC
TTGCAAGCCGCGCGAAAGAAAAGCAAGGACACAGCTTCGCCCTCAAATCG
AGCGCAAATAGCTGGAATTTTGACGGACACGAGAATGGAAGACGTTGCAA
GATTATCGATAGAAGGGAAATTTGGGAAGGTGCAAGAAATGTCGGGCGCA
AAACAAGCGGGGTCATCAAATGTGATCGAGGTTAACGATAGCGATGCAGA
ACCAGACGACAGAGGTCTACAAGAAGAGGAGCTTTCTGTTCTCAAACCTA
CGCAAGCCCAAAGAAAGCTAACAGAAGATATCTACCGGATTCAGAGTTGT
ATGAACGACGTTGACAAAAACTTTATTAGCGACAAACTGGAATGGCTTCT
TGATGAAATTGTACACTTTCATGATGGGCGGAAAGGATCTCTCGACGCAG
CGGAGTATGTAAGGGTTCTTCGAGATCAACTTGTACAGAGACGTCTGCAA
GAAATTGGTTCGATACGCGAGATACCGGATTTCAAGAGTGACCCCCAGTT
GAAAGCACGAGAACGACTGTGA

protein sequence of Gvermi6965.t2

>Gvermi6965.t2 ID=Gvermi6965.t2|Name=Gvermi6965.t2|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=774bp
MSSNSGEDHWFWDGKGMPDNKHDRRRVFHKSVALRHASDGRTRHFKVGDT
VNMAGEGEVWVAQIIELFQVTAHDPELRHILRADSVRNESKRHYELKRCT
LRWFYNYSDMIPDTLKDSRWPKRLDDEIWFSDHIEKTGYNSVQVIDGRAW
LFDNLREKSEFLVNLPEEYDKERDIVRIVRGFVDSKHDHLPVRLLLDGEL
KWLKENPSDDPKLFHNSKRRLESIAQSSPSRKRQKNRHSSTLRSPVNVNE
DEFDPADRKSKSARRKTRSLERDRDNVGDDVSKIRRPIRRRKITIDDDDE
SASKQEDDDESDNIPLDQLTPITHNFTPQPNLSDQPENIDLVNDEVRDLV
ESLNASVYENDAHEPQTRSPEKLVTEAPQYVGEDEITPAPSTRVTKRKSL
ASRSKANTAIASRIKQTTPKPSSPSTNDHGIIVIDSDDDGQPQKPVSKAT
SPKLQRFHPGAASRAYRGGRHGKPSARSRSSFMPTSRERQAVSSKRQSNA
GGDELQKSPSVVETDKVTEGKRSSKQIDAKAEDRGRLKEGKSLNVKEGLN
SNSVLKTTTLSDGDDGSPVIVSNNNMEVGQKKPDAGDVIDLQRKDGKRGS
LQAARKKSKDTASPSNRAQIAGILTDTRMEDVARLSIEGKFGKVQEMSGA
KQAGSSNVIEVNDSDAEPDDRGLQEEELSVLKPTQAQRKLTEDIYRIQSC
MNDVDKNFISDKLEWLLDEIVHFHDGRKGSLDAAEYVRVLRDQLVQRRLQ
EIGSIREIPDFKSDPQLKARERL*

mRNA from alignment at ScGOVlb_24229:769980..772301+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi6965.t2 ID=Gvermi6965.t2|Name=Gvermi6965.t2|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=2322bp|location=Sequence derived from alignment at ScGOVlb_24229:769980..772301+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTCCTCCAATTCAGGCGAAGATCACTGGTTCTGGGATGGAAAGGGCAT
GCCAGACAACAAACACGACCGTCGCCGCGTTTTTCATAAATCTGTGGCAT
TGAGACATGCGTCAGATGGCCGCACGCGCCACTTCAAGGTTGGTGACACT
GTGAACATGGCAGGTGAAGGGGAGGTATGGGTAGCGCAGATTATTGAACT
TTTCCAAGTAACTGCGCATGACCCAGAGCTTCGGCACATCTTGCGCGCAG
ACAGCGTCAGGAACGAATCAAAGCGTCACTATGAGCTTAAGAGATGCACT
TTGCGCTGGTTCTACAATTATAGCGACATGATCCCGGACACTCTGAAAGA
TTCGAGATGGCCAAAACGACTTGATGATGAGATCTGGTTTTCTGATCATA
TCGAAAAGACTGGCTACAATAGTGTACAAGTCATCGATGGAAGGGCATGG
CTCTTCGACAATTTGCGAGAGAAAAGTGAATTTCTTGTCAATCTTCCTGA
GGAATATGATAAAGAACGGGATATAGTTCGGATTGTACGCGGATTCGTCG
ACTCAAAACACGACCATTTACCCGTTCGCTTACTTCTTGATGGAGAACTC
AAGTGGTTGAAGGAAAATCCATCCGACGACCCGAAGTTGTTTCACAATTC
TAAGCGTCGGCTGGAGAGCATTGCCCAATCCTCGCCTTCACGAAAGCGCC
AAAAGAACAGACACTCATCAACATTGCGCTCACCCGTCAATGTCAATGAG
GATGAGTTTGATCCGGCGGATAGAAAGTCTAAGAGTGCGAGACGAAAAAC
TCGATCGCTAGAAAGAGATAGAGATAATGTGGGAGACGACGTTTCTAAAA
TCAGGCGTCCAATCCGCAGGAGAAAAATAACCATCGATGATGATGATGAA
TCTGCATCCAAACAGGAGGACGATGACGAAAGCGACAACATTCCCCTCGA
CCAACTCACACCTATAACGCACAATTTCACACCTCAGCCAAATCTTTCTG
ACCAGCCAGAGAACATTGACCTAGTGAACGATGAAGTACGGGACCTCGTT
GAAAGCTTGAACGCCTCTGTGTATGAAAATGATGCTCATGAACCGCAGAC
CAGGTCTCCGGAGAAACTAGTAACGGAAGCTCCCCAATACGTAGGTGAGG
ATGAAATAACACCAGCCCCTTCGACGCGTGTAACTAAACGGAAATCTCTC
GCTTCGAGGTCCAAAGCGAACACCGCCATAGCCTCGAGAATCAAGCAGAC
AACTCCGAAGCCAAGCTCCCCATCAACAAATGATCATGGAATAATAGTAA
TCGATAGTGATGATGACGGACAGCCGCAAAAGCCTGTTTCGAAAGCAACA
TCACCAAAATTGCAACGCTTTCATCCAGGCGCTGCGAGTCGTGCGTATAG
AGGGGGACGACATGGGAAACCGTCTGCGAGGAGTCGTTCGTCGTTTATGC
CTACCTCGAGAGAACGCCAAGCCGTATCCTCTAAGCGACAAAGCAATGCT
GGTGGGGATGAACTCCAGAAGAGCCCATCTGTCGTCGAAACCGATAAAGT
TACGGAAGGCAAACGGTCGTCGAAACAAATAGATGCGAAAGCGGAAGACC
GGGGTCGTCTCAAGGAAGGGAAGTCTTTAAATGTGAAAGAAGGACTGAAT
TCCAATTCAGTTTTGAAGACTACTACGCTTAGCGACGGTGATGATGGCAG
CCCAGTCATTGTGTCAAATAATAATATGGAAGTGGGACAGAAAAAGCCAG
ACGCGGGAGATGTTATTGACCTCCAACGCAAAGACGGGAAGCGTGGGTCC
TTGCAAGCCGCGCGAAAGAAAAGCAAGGACACAGCTTCGCCCTCAAATCG
AGCGCAAATAGCTGGAATTTTGACGGACACGAGAATGGAAGACGTTGCAA
GATTATCGATAGAAGGGAAATTTGGGAAGGTGCAAGAAATGTCGGGCGCA
AAACAAGCGGGGTCATCAAATGTGATCGAGGTTAACGATAGCGATGCAGA
ACCAGACGACAGAGGTCTACAAGAAGAGGAGCTTTCTGTTCTCAAACCTA
CGCAAGCCCAAAGAAAGCTAACAGAAGATATCTACCGGATTCAGAGTTGT
ATGAACGACGTTGACAAAAACTTTATTAGCGACAAACTGGAATGGCTTCT
TGATGAAATTGTACACTTTCATGATGGGCGGAAAGGATCTCTCGACGCAG
CGGAGTATGTAAGGGTTCTTCGAGATCAACTTGTACAGAGACGTCTGCAA
GAAATTGGTTCGATACGCGAGATACCGGATTTCAAGAGTGACCCCCAGTT
GAAAGCACGAGAACGACTGTGA

Coding sequence (CDS) from alignment at ScGOVlb_24229:769980..772301+

>Gvermi6965.t2 ID=Gvermi6965.t2|Name=Gvermi6965.t2|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=2322bp|location=Sequence derived from alignment at ScGOVlb_24229:769980..772301+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTCCTCCAATTCAGGCGAAGATCACTGGTTCTGGGATGGAAAGGGCAT
GCCAGACAACAAACACGACCGTCGCCGCGTTTTTCATAAATCTGTGGCAT
TGAGACATGCGTCAGATGGCCGCACGCGCCACTTCAAGGTTGGTGACACT
GTGAACATGGCAGGTGAAGGGGAGGTATGGGTAGCGCAGATTATTGAACT
TTTCCAAGTAACTGCGCATGACCCAGAGCTTCGGCACATCTTGCGCGCAG
ACAGCGTCAGGAACGAATCAAAGCGTCACTATGAGCTTAAGAGATGCACT
TTGCGCTGGTTCTACAATTATAGCGACATGATCCCGGACACTCTGAAAGA
TTCGAGATGGCCAAAACGACTTGATGATGAGATCTGGTTTTCTGATCATA
TCGAAAAGACTGGCTACAATAGTGTACAAGTCATCGATGGAAGGGCATGG
CTCTTCGACAATTTGCGAGAGAAAAGTGAATTTCTTGTCAATCTTCCTGA
GGAATATGATAAAGAACGGGATATAGTTCGGATTGTACGCGGATTCGTCG
ACTCAAAACACGACCATTTACCCGTTCGCTTACTTCTTGATGGAGAACTC
AAGTGGTTGAAGGAAAATCCATCCGACGACCCGAAGTTGTTTCACAATTC
TAAGCGTCGGCTGGAGAGCATTGCCCAATCCTCGCCTTCACGAAAGCGCC
AAAAGAACAGACACTCATCAACATTGCGCTCACCCGTCAATGTCAATGAG
GATGAGTTTGATCCGGCGGATAGAAAGTCTAAGAGTGCGAGACGAAAAAC
TCGATCGCTAGAAAGAGATAGAGATAATGTGGGAGACGACGTTTCTAAAA
TCAGGCGTCCAATCCGCAGGAGAAAAATAACCATCGATGATGATGATGAA
TCTGCATCCAAACAGGAGGACGATGACGAAAGCGACAACATTCCCCTCGA
CCAACTCACACCTATAACGCACAATTTCACACCTCAGCCAAATCTTTCTG
ACCAGCCAGAGAACATTGACCTAGTGAACGATGAAGTACGGGACCTCGTT
GAAAGCTTGAACGCCTCTGTGTATGAAAATGATGCTCATGAACCGCAGAC
CAGGTCTCCGGAGAAACTAGTAACGGAAGCTCCCCAATACGTAGGTGAGG
ATGAAATAACACCAGCCCCTTCGACGCGTGTAACTAAACGGAAATCTCTC
GCTTCGAGGTCCAAAGCGAACACCGCCATAGCCTCGAGAATCAAGCAGAC
AACTCCGAAGCCAAGCTCCCCATCAACAAATGATCATGGAATAATAGTAA
TCGATAGTGATGATGACGGACAGCCGCAAAAGCCTGTTTCGAAAGCAACA
TCACCAAAATTGCAACGCTTTCATCCAGGCGCTGCGAGTCGTGCGTATAG
AGGGGGACGACATGGGAAACCGTCTGCGAGGAGTCGTTCGTCGTTTATGC
CTACCTCGAGAGAACGCCAAGCCGTATCCTCTAAGCGACAAAGCAATGCT
GGTGGGGATGAACTCCAGAAGAGCCCATCTGTCGTCGAAACCGATAAAGT
TACGGAAGGCAAACGGTCGTCGAAACAAATAGATGCGAAAGCGGAAGACC
GGGGTCGTCTCAAGGAAGGGAAGTCTTTAAATGTGAAAGAAGGACTGAAT
TCCAATTCAGTTTTGAAGACTACTACGCTTAGCGACGGTGATGATGGCAG
CCCAGTCATTGTGTCAAATAATAATATGGAAGTGGGACAGAAAAAGCCAG
ACGCGGGAGATGTTATTGACCTCCAACGCAAAGACGGGAAGCGTGGGTCC
TTGCAAGCCGCGCGAAAGAAAAGCAAGGACACAGCTTCGCCCTCAAATCG
AGCGCAAATAGCTGGAATTTTGACGGACACGAGAATGGAAGACGTTGCAA
GATTATCGATAGAAGGGAAATTTGGGAAGGTGCAAGAAATGTCGGGCGCA
AAACAAGCGGGGTCATCAAATGTGATCGAGGTTAACGATAGCGATGCAGA
ACCAGACGACAGAGGTCTACAAGAAGAGGAGCTTTCTGTTCTCAAACCTA
CGCAAGCCCAAAGAAAGCTAACAGAAGATATCTACCGGATTCAGAGTTGT
ATGAACGACGTTGACAAAAACTTTATTAGCGACAAACTGGAATGGCTTCT
TGATGAAATTGTACACTTTCATGATGGGCGGAAAGGATCTCTCGACGCAG
CGGAGTATGTAAGGGTTCTTCGAGATCAACTTGTACAGAGACGTCTGCAA
GAAATTGGTTCGATACGCGAGATACCGGATTTCAAGAGTGACCCCCAGTT
GAAAGCACGAGAACGACTGTGA