Gvermi6965.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi6965.t1
Unique NameGvermi6965.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length479
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24229contigScGOVlb_24229:770806..772301 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi6965Gvermi6965Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_24229 769980..772301 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6965.t1Gvermi6965.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_24229 770806..772301 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6965.t1.start1Gvermi6965.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_24229 770806..770808 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6965.t1.CDS1Gvermi6965.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24229 770806..770835 +
Gvermi6965.t1.CDS2Gvermi6965.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24229 770895..772301 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6965.t1.exon1Gvermi6965.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24229 770806..770835 +
Gvermi6965.t1.exon2Gvermi6965.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24229 770895..772301 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6965.t1.intron1Gvermi6965.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_24229 770836..770894 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6965.t1.stop1Gvermi6965.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_24229 772299..772301 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi6965.t1 ID=Gvermi6965.t1|Name=Gvermi6965.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=479bp
MWETTFLKSGEDDDESDNIPLDQLTPITHNFTPQPNLSDQPENIDLVNDE
VRDLVESLNASVYENDAHEPQTRSPEKLVTEAPQYVGEDEITPAPSTRVT
KRKSLASRSKANTAIASRIKQTTPKPSSPSTNDHGIIVIDSDDDGQPQKP
VSKATSPKLQRFHPGAASRAYRGGRHGKPSARSRSSFMPTSRERQAVSSK
RQSNAGGDELQKSPSVVETDKVTEGKRSSKQIDAKAEDRGRLKEGKSLNV
KEGLNSNSVLKTTTLSDGDDGSPVIVSNNNMEVGQKKPDAGDVIDLQRKD
GKRGSLQAARKKSKDTASPSNRAQIAGILTDTRMEDVARLSIEGKFGKVQ
EMSGAKQAGSSNVIEVNDSDAEPDDRGLQEEELSVLKPTQAQRKLTEDIY
RIQSCMNDVDKNFISDKLEWLLDEIVHFHDGRKGSLDAAEYVRVLRDQLV
QRRLQEIGSIREIPDFKSDPQLKARERL*
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spliced messenger RNA

>Gvermi6965.t1 ID=Gvermi6965.t1|Name=Gvermi6965.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1437bp|location=Sequence derived from alignment at ScGOVlb_24229:770806..772301+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTGGGAGACGACGTTTCTAAAATCAGGCGAGGACGATGACGAAAGCGA
CAACATTCCCCTCGACCAACTCACACCTATAACGCACAATTTCACACCTC
AGCCAAATCTTTCTGACCAGCCAGAGAACATTGACCTAGTGAACGATGAA
GTACGGGACCTCGTTGAAAGCTTGAACGCCTCTGTGTATGAAAATGATGC
TCATGAACCGCAGACCAGGTCTCCGGAGAAACTAGTAACGGAAGCTCCCC
AATACGTAGGTGAGGATGAAATAACACCAGCCCCTTCGACGCGTGTAACT
AAACGGAAATCTCTCGCTTCGAGGTCCAAAGCGAACACCGCCATAGCCTC
GAGAATCAAGCAGACAACTCCGAAGCCAAGCTCCCCATCAACAAATGATC
ATGGAATAATAGTAATCGATAGTGATGATGACGGACAGCCGCAAAAGCCT
GTTTCGAAAGCAACATCACCAAAATTGCAACGCTTTCATCCAGGCGCTGC
GAGTCGTGCGTATAGAGGGGGACGACATGGGAAACCGTCTGCGAGGAGTC
GTTCGTCGTTTATGCCTACCTCGAGAGAACGCCAAGCCGTATCCTCTAAG
CGACAAAGCAATGCTGGTGGGGATGAACTCCAGAAGAGCCCATCTGTCGT
CGAAACCGATAAAGTTACGGAAGGCAAACGGTCGTCGAAACAAATAGATG
CGAAAGCGGAAGACCGGGGTCGTCTCAAGGAAGGGAAGTCTTTAAATGTG
AAAGAAGGACTGAATTCCAATTCAGTTTTGAAGACTACTACGCTTAGCGA
CGGTGATGATGGCAGCCCAGTCATTGTGTCAAATAATAATATGGAAGTGG
GACAGAAAAAGCCAGACGCGGGAGATGTTATTGACCTCCAACGCAAAGAC
GGGAAGCGTGGGTCCTTGCAAGCCGCGCGAAAGAAAAGCAAGGACACAGC
TTCGCCCTCAAATCGAGCGCAAATAGCTGGAATTTTGACGGACACGAGAA
TGGAAGACGTTGCAAGATTATCGATAGAAGGGAAATTTGGGAAGGTGCAA
GAAATGTCGGGCGCAAAACAAGCGGGGTCATCAAATGTGATCGAGGTTAA
CGATAGCGATGCAGAACCAGACGACAGAGGTCTACAAGAAGAGGAGCTTT
CTGTTCTCAAACCTACGCAAGCCCAAAGAAAGCTAACAGAAGATATCTAC
CGGATTCAGAGTTGTATGAACGACGTTGACAAAAACTTTATTAGCGACAA
ACTGGAATGGCTTCTTGATGAAATTGTACACTTTCATGATGGGCGGAAAG
GATCTCTCGACGCAGCGGAGTATGTAAGGGTTCTTCGAGATCAACTTGTA
CAGAGACGTCTGCAAGAAATTGGTTCGATACGCGAGATACCGGATTTCAA
GAGTGACCCCCAGTTGAAAGCACGAGAACGACTGTGA
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protein sequence of Gvermi6965.t1

>Gvermi6965.t1 ID=Gvermi6965.t1|Name=Gvermi6965.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=479bp
MWETTFLKSGEDDDESDNIPLDQLTPITHNFTPQPNLSDQPENIDLVNDE
VRDLVESLNASVYENDAHEPQTRSPEKLVTEAPQYVGEDEITPAPSTRVT
KRKSLASRSKANTAIASRIKQTTPKPSSPSTNDHGIIVIDSDDDGQPQKP
VSKATSPKLQRFHPGAASRAYRGGRHGKPSARSRSSFMPTSRERQAVSSK
RQSNAGGDELQKSPSVVETDKVTEGKRSSKQIDAKAEDRGRLKEGKSLNV
KEGLNSNSVLKTTTLSDGDDGSPVIVSNNNMEVGQKKPDAGDVIDLQRKD
GKRGSLQAARKKSKDTASPSNRAQIAGILTDTRMEDVARLSIEGKFGKVQ
EMSGAKQAGSSNVIEVNDSDAEPDDRGLQEEELSVLKPTQAQRKLTEDIY
RIQSCMNDVDKNFISDKLEWLLDEIVHFHDGRKGSLDAAEYVRVLRDQLV
QRRLQEIGSIREIPDFKSDPQLKARERL*
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mRNA from alignment at ScGOVlb_24229:770806..772301+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi6965.t1 ID=Gvermi6965.t1|Name=Gvermi6965.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1496bp|location=Sequence derived from alignment at ScGOVlb_24229:770806..772301+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTGGGAGACGACGTTTCTAAAATCAGGCGTCCAATCCGCAGGAGAAAA
ATAACCATCGATGATGATGATGAATCTGCATCCAAACAGGAGGACGATGA
CGAAAGCGACAACATTCCCCTCGACCAACTCACACCTATAACGCACAATT
TCACACCTCAGCCAAATCTTTCTGACCAGCCAGAGAACATTGACCTAGTG
AACGATGAAGTACGGGACCTCGTTGAAAGCTTGAACGCCTCTGTGTATGA
AAATGATGCTCATGAACCGCAGACCAGGTCTCCGGAGAAACTAGTAACGG
AAGCTCCCCAATACGTAGGTGAGGATGAAATAACACCAGCCCCTTCGACG
CGTGTAACTAAACGGAAATCTCTCGCTTCGAGGTCCAAAGCGAACACCGC
CATAGCCTCGAGAATCAAGCAGACAACTCCGAAGCCAAGCTCCCCATCAA
CAAATGATCATGGAATAATAGTAATCGATAGTGATGATGACGGACAGCCG
CAAAAGCCTGTTTCGAAAGCAACATCACCAAAATTGCAACGCTTTCATCC
AGGCGCTGCGAGTCGTGCGTATAGAGGGGGACGACATGGGAAACCGTCTG
CGAGGAGTCGTTCGTCGTTTATGCCTACCTCGAGAGAACGCCAAGCCGTA
TCCTCTAAGCGACAAAGCAATGCTGGTGGGGATGAACTCCAGAAGAGCCC
ATCTGTCGTCGAAACCGATAAAGTTACGGAAGGCAAACGGTCGTCGAAAC
AAATAGATGCGAAAGCGGAAGACCGGGGTCGTCTCAAGGAAGGGAAGTCT
TTAAATGTGAAAGAAGGACTGAATTCCAATTCAGTTTTGAAGACTACTAC
GCTTAGCGACGGTGATGATGGCAGCCCAGTCATTGTGTCAAATAATAATA
TGGAAGTGGGACAGAAAAAGCCAGACGCGGGAGATGTTATTGACCTCCAA
CGCAAAGACGGGAAGCGTGGGTCCTTGCAAGCCGCGCGAAAGAAAAGCAA
GGACACAGCTTCGCCCTCAAATCGAGCGCAAATAGCTGGAATTTTGACGG
ACACGAGAATGGAAGACGTTGCAAGATTATCGATAGAAGGGAAATTTGGG
AAGGTGCAAGAAATGTCGGGCGCAAAACAAGCGGGGTCATCAAATGTGAT
CGAGGTTAACGATAGCGATGCAGAACCAGACGACAGAGGTCTACAAGAAG
AGGAGCTTTCTGTTCTCAAACCTACGCAAGCCCAAAGAAAGCTAACAGAA
GATATCTACCGGATTCAGAGTTGTATGAACGACGTTGACAAAAACTTTAT
TAGCGACAAACTGGAATGGCTTCTTGATGAAATTGTACACTTTCATGATG
GGCGGAAAGGATCTCTCGACGCAGCGGAGTATGTAAGGGTTCTTCGAGAT
CAACTTGTACAGAGACGTCTGCAAGAAATTGGTTCGATACGCGAGATACC
GGATTTCAAGAGTGACCCCCAGTTGAAAGCACGAGAACGACTGTGA
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Coding sequence (CDS) from alignment at ScGOVlb_24229:770806..772301+

>Gvermi6965.t1 ID=Gvermi6965.t1|Name=Gvermi6965.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1437bp|location=Sequence derived from alignment at ScGOVlb_24229:770806..772301+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTGGGAGACGACGTTTCTAAAATCAGGCGAGGACGATGACGAAAGCGA
CAACATTCCCCTCGACCAACTCACACCTATAACGCACAATTTCACACCTC
AGCCAAATCTTTCTGACCAGCCAGAGAACATTGACCTAGTGAACGATGAA
GTACGGGACCTCGTTGAAAGCTTGAACGCCTCTGTGTATGAAAATGATGC
TCATGAACCGCAGACCAGGTCTCCGGAGAAACTAGTAACGGAAGCTCCCC
AATACGTAGGTGAGGATGAAATAACACCAGCCCCTTCGACGCGTGTAACT
AAACGGAAATCTCTCGCTTCGAGGTCCAAAGCGAACACCGCCATAGCCTC
GAGAATCAAGCAGACAACTCCGAAGCCAAGCTCCCCATCAACAAATGATC
ATGGAATAATAGTAATCGATAGTGATGATGACGGACAGCCGCAAAAGCCT
GTTTCGAAAGCAACATCACCAAAATTGCAACGCTTTCATCCAGGCGCTGC
GAGTCGTGCGTATAGAGGGGGACGACATGGGAAACCGTCTGCGAGGAGTC
GTTCGTCGTTTATGCCTACCTCGAGAGAACGCCAAGCCGTATCCTCTAAG
CGACAAAGCAATGCTGGTGGGGATGAACTCCAGAAGAGCCCATCTGTCGT
CGAAACCGATAAAGTTACGGAAGGCAAACGGTCGTCGAAACAAATAGATG
CGAAAGCGGAAGACCGGGGTCGTCTCAAGGAAGGGAAGTCTTTAAATGTG
AAAGAAGGACTGAATTCCAATTCAGTTTTGAAGACTACTACGCTTAGCGA
CGGTGATGATGGCAGCCCAGTCATTGTGTCAAATAATAATATGGAAGTGG
GACAGAAAAAGCCAGACGCGGGAGATGTTATTGACCTCCAACGCAAAGAC
GGGAAGCGTGGGTCCTTGCAAGCCGCGCGAAAGAAAAGCAAGGACACAGC
TTCGCCCTCAAATCGAGCGCAAATAGCTGGAATTTTGACGGACACGAGAA
TGGAAGACGTTGCAAGATTATCGATAGAAGGGAAATTTGGGAAGGTGCAA
GAAATGTCGGGCGCAAAACAAGCGGGGTCATCAAATGTGATCGAGGTTAA
CGATAGCGATGCAGAACCAGACGACAGAGGTCTACAAGAAGAGGAGCTTT
CTGTTCTCAAACCTACGCAAGCCCAAAGAAAGCTAACAGAAGATATCTAC
CGGATTCAGAGTTGTATGAACGACGTTGACAAAAACTTTATTAGCGACAA
ACTGGAATGGCTTCTTGATGAAATTGTACACTTTCATGATGGGCGGAAAG
GATCTCTCGACGCAGCGGAGTATGTAAGGGTTCTTCGAGATCAACTTGTA
CAGAGACGTCTGCAAGAAATTGGTTCGATACGCGAGATACCGGATTTCAA
GAGTGACCCCCAGTTGAAAGCACGAGAACGACTGTGA
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