Gvermi6962.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi6962.t1
Unique NameGvermi6962.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length228
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24229contigScGOVlb_24229:756266..757154 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog3067.XP_002949323.1
PFAMsLongin,Synaptobrevin
Max annot lvl3041|Chlorophyta
KEGG koko:K08517
KEGG Pathwayko04130,ko04145,ko05134,map04130,map04145,map05134
Evalue1.66e-70
EggNOG OGsCOG5143@1|root,KOG0862@2759|Eukaryota,37I2U@33090|Viridiplantae,34HIQ@3041|Chlorophyta
DescriptionBelongs to the synaptobrevin family
COG categoryU
BRITEko00000,ko00001,ko04131
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi6962Gvermi6962Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_24229 756266..757154 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6962.t1Gvermi6962.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_24229 756266..757154 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6962.t1.start1Gvermi6962.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_24229 756266..756268 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6962.t1.CDS1Gvermi6962.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24229 756266..756355 +
Gvermi6962.t1.CDS2Gvermi6962.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24229 756475..756907 +
Gvermi6962.t1.CDS3Gvermi6962.t1.CDS3Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24229 756994..757154 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6962.t1.exon1Gvermi6962.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24229 756266..756355 +
Gvermi6962.t1.exon2Gvermi6962.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24229 756475..756907 +
Gvermi6962.t1.exon3Gvermi6962.t1.exon3Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24229 756994..757154 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6962.t1.intron1Gvermi6962.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_24229 756356..756474 +
Gvermi6962.t1.intron2Gvermi6962.t1.intron2Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_24229 756908..756993 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6962.t1.stop1Gvermi6962.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_24229 757152..757154 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi6962.t1 ID=Gvermi6962.t1|Name=Gvermi6962.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=228bp
MPKVTLIARLTDGLPLAASMADEKDAYAKELETYERQAKKLVRSLASQNN
TAPNHQKDEYVTVESGPYFCFHYVLSSGVCILTLTERAYPKRLAFDYLDE
LRKEFFQVYGNQIQSASRPYEFIRFDTFIQKTKKVYNDSKTQRNLQKLNC
ELKDVHSIMTKNINEVISRGERLEHVAQKSTRLAQESKRYAAQAKHANRM
RIIRQYAPVGIVVAVVLVVWLLVRRLR*
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spliced messenger RNA

>Gvermi6962.t1 ID=Gvermi6962.t1|Name=Gvermi6962.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=684bp|location=Sequence derived from alignment at ScGOVlb_24229:756266..757154+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCGAAAGTTACGCTCATTGCGCGCCTAACAGACGGCCTGCCACTCGC
GGCCTCAATGGCAGACGAAAAGGATGCTTATGCGAAAGAGctcgagactt
acgaaagacaggccaagaagcttgtcagatctctcgcatcgcaaaacaat
acggctcccaatcatcagaaggatgagtatgtTACCGTTGAGTCGGGGCC
TTACTTCTGTTTCCATTATGTTCTTTCTTCCGGCGTCTGTATTCTCACTT
TGACCGAGCGAGCTTACCCTAAGCGCCTAGCTTTTGATTATCTTGACGAG
CTTCGAAAAGAGTTTTTTCAAGTCTACGGAAACCAGATTCAGTCAGCTTC
CAGACCGTATGAGTTCATTCGATTTGACACCTTCATCCAAAAAACGAAGA
AGGTCTACAATGATTCCAAAACACAAAGAAACTTGCAAAAGCTCAATTGT
GAGCTCAAAGACGTGCACTCTATTATGACCAAGAACATTAACGAAGTCAT
TTCCAGAGGAGAGAGGTTGGAACACGTTGCCCAGAAATCTACCAGACTAG
CCCAAGAGTCGAAGAGATATGCCGCTCAGGCGAAGCACGCAAATCGAATG
CGTATCATCAGACAGTATGCTCCTGTGGGAATCGTTGTTGCCGTAGTCCT
CGTGGTGTGGCTTCTTGTTCGAAGGCTGAGGTGA
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protein sequence of Gvermi6962.t1

>Gvermi6962.t1 ID=Gvermi6962.t1|Name=Gvermi6962.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=228bp
MPKVTLIARLTDGLPLAASMADEKDAYAKELETYERQAKKLVRSLASQNN
TAPNHQKDEYVTVESGPYFCFHYVLSSGVCILTLTERAYPKRLAFDYLDE
LRKEFFQVYGNQIQSASRPYEFIRFDTFIQKTKKVYNDSKTQRNLQKLNC
ELKDVHSIMTKNINEVISRGERLEHVAQKSTRLAQESKRYAAQAKHANRM
RIIRQYAPVGIVVAVVLVVWLLVRRLR*
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mRNA from alignment at ScGOVlb_24229:756266..757154+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi6962.t1 ID=Gvermi6962.t1|Name=Gvermi6962.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=889bp|location=Sequence derived from alignment at ScGOVlb_24229:756266..757154+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCCGAAAGTTACGCTCATTGCGCGCCTAACAGACGGCCTGCCACTCGC
GGCCTCAATGGCAGACGAAAAGGATGCTTATGCGAAAGAGGTGAGTCCAT
AGTACCCGTCGCCTCTCTTTTATTACATATCCACGGTAATGCGAATAGCA
AAGCGCTTCTTGAACTGTCATCCGAAAGCTGGATCACTGACGAAAACGAT
TCATCAcagctcgagacttacgaaagacaggccaagaagcttgtcagatc
tctcgcatcgcaaaacaatacggctcccaatcatcagaaggatgagtatg
tTACCGTTGAGTCGGGGCCTTACTTCTGTTTCCATTATGTTCTTTCTTCC
GGCGTCTGTATTCTCACTTTGACCGAGCGAGCTTACCCTAAGCGCCTAGC
TTTTGATTATCTTGACGAGCTTCGAAAAGAGTTTTTTCAAGTCTACGGAA
ACCAGATTCAGTCAGCTTCCAGACCGTATGAGTTCATTCGATTTGACACC
TTCATCCAAAAAACGAAGAAGGTCTACAATGATTCCAAAACACAAAGAAA
CTTGCAAAAGCTCAATTGTGAGCTCAAAGACGTGCACTCTATTATGACCA
AGAACATTAACGAAGTCATTTCCAGAGGAGAGAGGTTGGAACGTAAGTTG
CGCAACATTTCACACATCGTGCACAACCCTGTGAGCGTAAACCTTTTCGC
TGACCAGTGAGTGAGTAATCGCCCGTAGACGTTGCCCAGAAATCTACCAG
ACTAGCCCAAGAGTCGAAGAGATATGCCGCTCAGGCGAAGCACGCAAATC
GAATGCGTATCATCAGACAGTATGCTCCTGTGGGAATCGTTGTTGCCGTA
GTCCTCGTGGTGTGGCTTCTTGTTCGAAGGCTGAGGTGA
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Coding sequence (CDS) from alignment at ScGOVlb_24229:756266..757154+

>Gvermi6962.t1 ID=Gvermi6962.t1|Name=Gvermi6962.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=684bp|location=Sequence derived from alignment at ScGOVlb_24229:756266..757154+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCCGAAAGTTACGCTCATTGCGCGCCTAACAGACGGCCTGCCACTCGC
GGCCTCAATGGCAGACGAAAAGGATGCTTATGCGAAAGAGctcgagactt
acgaaagacaggccaagaagcttgtcagatctctcgcatcgcaaaacaat
acggctcccaatcatcagaaggatgagtatgtTACCGTTGAGTCGGGGCC
TTACTTCTGTTTCCATTATGTTCTTTCTTCCGGCGTCTGTATTCTCACTT
TGACCGAGCGAGCTTACCCTAAGCGCCTAGCTTTTGATTATCTTGACGAG
CTTCGAAAAGAGTTTTTTCAAGTCTACGGAAACCAGATTCAGTCAGCTTC
CAGACCGTATGAGTTCATTCGATTTGACACCTTCATCCAAAAAACGAAGA
AGGTCTACAATGATTCCAAAACACAAAGAAACTTGCAAAAGCTCAATTGT
GAGCTCAAAGACGTGCACTCTATTATGACCAAGAACATTAACGAAGTCAT
TTCCAGAGGAGAGAGGTTGGAACACGTTGCCCAGAAATCTACCAGACTAG
CCCAAGAGTCGAAGAGATATGCCGCTCAGGCGAAGCACGCAAATCGAATG
CGTATCATCAGACAGTATGCTCCTGTGGGAATCGTTGTTGCCGTAGTCCT
CGTGGTGTGGCTTCTTGTTCGAAGGCTGAGGTGA
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