Gvermi6961.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi6961.t1
Unique NameGvermi6961.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length597
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24229contigScGOVlb_24229:753805..755595 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005703171.1
PFAMsFKBP_C,TPR_1,TPR_8
Max annot lvl2759|Eukaryota
KEGG koko:K09571,ko:K20097
KEGG Pathwayko04915,map04915
Evalue4.99e-123
EggNOG OGsCOG0545@1|root,KOG0543@2759|Eukaryota
EC5.2.1.8
DescriptionFK506 binding
COG categoryO
BRITEko00000,ko00001,ko01000,ko03110
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi6961Gvermi6961Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_24229 753805..755595 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6961.t1.stop1Gvermi6961.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_24229 753805..753807 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6961.t1.CDS1Gvermi6961.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24229 753805..755595 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6961.t1.exon1Gvermi6961.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24229 753805..755595 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6961.t1.start1Gvermi6961.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_24229 755593..755595 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6961.t1Gvermi6961.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_24229 753805..755595 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi6961.t1 ID=Gvermi6961.t1|Name=Gvermi6961.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=597bp
MTKEDVTIETSEPTPDSEFSQSGDLTGDGGVIKEIITHGQNAWQKPEDGD
DVSMHYRGTLLDGTEFDSSYERCTPFTFKLGEGKVIKGWDIVGKTMAKGE
KAKVTLKPEYAYGESGSPPKIPANATLVFEMELLSWASKHDVFSDGLVTK
TEIASGDGWERPGKLDEVTLSVECSQMDAEGKTATAVLYNGDVTFTNGNG
QVPPAWEKVVTDMKKDSVVSLLCRDHHVTGPGITYVPEGTECVEYKLSMK
SWKKVDDIHKDGSLVKKVMQEGEGWERPNDGSVVTIAAQFYRPAMDSNLI
VPSPEGEPYLTIEEITFKVGDGIVIDGLDRVVQSMKTKEAAFVIIEPQHA
FETAPDLLTTQFSDKGVTKETRLLVHVSLSKFEKAKDVWSMSTEEKLEEM
KARKEVGNGLFKRGRYAAAKKSYDRAVAFFESPTSEQSADLKAKINELLI
QCHINLAVCLDRMGDVQKVMHHCRKALEIAPSNVKALYRQGCAYLKMDDF
YNANSTLKYALQLSPGNVEIRRKLKEVKAKQLAQDAADKKLYSNLFGRLS
KMEEKENKKATTQEKIHPEHFAKGAEKEAKPAEDIEMKDAQIVGET*
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spliced messenger RNA

>Gvermi6961.t1 ID=Gvermi6961.t1|Name=Gvermi6961.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1791bp|location=Sequence derived from alignment at ScGOVlb_24229:753805..755595- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACAAAAGAAGACGTTACCATTGAAACCTCCGAACCCACCCCGGACTC
AGAGTTCTCGCAGTCGGGTGATCTTACTGGAGATGGAGGCGTAATAAAAG
AGATTATTACCCATGGGCAGAACGCGTGGCAGAAGCCCGAAGATGGGGAC
GATGTGTCCATGCATTATCGCGGCACTTTGCTCGATGGAACTGAATTCGA
CAGCAGCTATGAGCGCTGCACGCCGTTCACGTTCAAGCTTGGAGAGGGAA
AAGTCATCAAGGGATGGGACATTGTTGGCAAGACAATGGCTAAGGGAGAG
AAAGCTAAGGTGACCCTCAAGCCAGAATACGCCTATGGCGAAAGCGGATC
ACCGCCCAAGATCCCTGCCAATGCCACCCTTGTATTCGAAATGGAGCTTC
TTTCGTGGGCCAGCAAACACGATGTATTTAGTGATGGACTCGTCACAAAG
ACTGAGATTGCGTCCGGAGACGGATGGGAACGGCCTGGTAAGCTTGATGA
GGTTACCCTTTCCGTAGAGTGTTCTCAAATGGATGCCGAAGGGAAAACCG
CAACGGCTGTGTTGTACAATGGAGACGTCACCTTTACAAATGGGAATGGA
CAGGTCCCGCCAGCATGGGAAAAAGTGGTTACAGATATGAAGAAAGACTC
CGTTGTCAGCCTTCTGTGTCGCGATCATCATGTGACTGGACCGGGCATCA
CATACGTTCCCGAAGGCACAGAATGTGTGGAGTACAAACTCTCCATGAAG
TCATGGAAGAAGGTCGATGACATTCATAAGGATGGCTCCCTCGTGAAGAA
AGTCATGCAGGAAGGCGAAGGATGGGAACGGCCAAACGATGGCTCAGTCG
TTACTATAGCGGCACAGTTCTACCGGCCAGCCATGGACTCAAATCTGATA
GTTCCTTCGCCTGAGGGTGAGCCTTACCTTACAATTGAGGAAATCACTTT
TAAGGTTGGTGACGGTATTGTTATTGATGGCCTTGATCGTGTAGTTCAGT
CCATGAAGACAAAGGAGGCTGCGTTTGTCATTATCGAACCCCAGCACGCC
TTTGAGACTGCTCCTGATCTTCTCACGACGCAGTTTTCTGACAAAGGAGT
AACAAAAGAAACTAGGCTACTTGTGCACGTTTCTCTATCCAAGTTTGAAA
AGGCGAAGGATGTATGGAGCATGTCCACTGAGGAAAAATTGGAAGAGATG
AAGGCTAGGAAGGAAGTTGGAAATGGTCTGTTTAAGAGGGGCAGATACGC
AGCAGCGAAAAAGTCATATGATCGCGCAGTCGCATTTTTCGAATCCCCCA
CATCGGAACAAAGTGCAGACCTGAAAGCGAAGATCAATGAGCTTCTTATC
CAGTGCCACATCAATTTGGCGGTGTGCTTAGATCGCATGGGAGACGTACA
AAAAGTGATGCATCATTGTCGAAAGGCTCTTGAGATTGCGCCGTCGAACG
TTAAAGCGTTGTATCGTCAGGGTTGTGCGTATCTCAAGATGGACGACTTT
TACAATGCTAATTCCACTTTGAAATATGCGTTGCAATTGAGTCCTGGCAA
TGTAGAGATTCGGCGAAAGTTGAAAGAAGTGAAGGCCAAGCAACTCGCTC
AGGACGCCGCCGACAAGAAGTTGTATTCGAATCTTTTCGGTAGATTGAGC
AAGATGGAAGAAAAAGAAAACAAAAAAGCAACGACGCAGGAGAAAATTCA
CCCTGAGCACTTTGCGAAGGGAGCGGAGAAAGAAGCAAAACCAGCGGAGG
ATATCGAAATGAAGGACGCGCAGATTGTCGGAGAGACTTAA
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protein sequence of Gvermi6961.t1

>Gvermi6961.t1 ID=Gvermi6961.t1|Name=Gvermi6961.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=597bp
MTKEDVTIETSEPTPDSEFSQSGDLTGDGGVIKEIITHGQNAWQKPEDGD
DVSMHYRGTLLDGTEFDSSYERCTPFTFKLGEGKVIKGWDIVGKTMAKGE
KAKVTLKPEYAYGESGSPPKIPANATLVFEMELLSWASKHDVFSDGLVTK
TEIASGDGWERPGKLDEVTLSVECSQMDAEGKTATAVLYNGDVTFTNGNG
QVPPAWEKVVTDMKKDSVVSLLCRDHHVTGPGITYVPEGTECVEYKLSMK
SWKKVDDIHKDGSLVKKVMQEGEGWERPNDGSVVTIAAQFYRPAMDSNLI
VPSPEGEPYLTIEEITFKVGDGIVIDGLDRVVQSMKTKEAAFVIIEPQHA
FETAPDLLTTQFSDKGVTKETRLLVHVSLSKFEKAKDVWSMSTEEKLEEM
KARKEVGNGLFKRGRYAAAKKSYDRAVAFFESPTSEQSADLKAKINELLI
QCHINLAVCLDRMGDVQKVMHHCRKALEIAPSNVKALYRQGCAYLKMDDF
YNANSTLKYALQLSPGNVEIRRKLKEVKAKQLAQDAADKKLYSNLFGRLS
KMEEKENKKATTQEKIHPEHFAKGAEKEAKPAEDIEMKDAQIVGET*
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mRNA from alignment at ScGOVlb_24229:753805..755595-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi6961.t1 ID=Gvermi6961.t1|Name=Gvermi6961.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1791bp|location=Sequence derived from alignment at ScGOVlb_24229:753805..755595- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGACAAAAGAAGACGTTACCATTGAAACCTCCGAACCCACCCCGGACTC
AGAGTTCTCGCAGTCGGGTGATCTTACTGGAGATGGAGGCGTAATAAAAG
AGATTATTACCCATGGGCAGAACGCGTGGCAGAAGCCCGAAGATGGGGAC
GATGTGTCCATGCATTATCGCGGCACTTTGCTCGATGGAACTGAATTCGA
CAGCAGCTATGAGCGCTGCACGCCGTTCACGTTCAAGCTTGGAGAGGGAA
AAGTCATCAAGGGATGGGACATTGTTGGCAAGACAATGGCTAAGGGAGAG
AAAGCTAAGGTGACCCTCAAGCCAGAATACGCCTATGGCGAAAGCGGATC
ACCGCCCAAGATCCCTGCCAATGCCACCCTTGTATTCGAAATGGAGCTTC
TTTCGTGGGCCAGCAAACACGATGTATTTAGTGATGGACTCGTCACAAAG
ACTGAGATTGCGTCCGGAGACGGATGGGAACGGCCTGGTAAGCTTGATGA
GGTTACCCTTTCCGTAGAGTGTTCTCAAATGGATGCCGAAGGGAAAACCG
CAACGGCTGTGTTGTACAATGGAGACGTCACCTTTACAAATGGGAATGGA
CAGGTCCCGCCAGCATGGGAAAAAGTGGTTACAGATATGAAGAAAGACTC
CGTTGTCAGCCTTCTGTGTCGCGATCATCATGTGACTGGACCGGGCATCA
CATACGTTCCCGAAGGCACAGAATGTGTGGAGTACAAACTCTCCATGAAG
TCATGGAAGAAGGTCGATGACATTCATAAGGATGGCTCCCTCGTGAAGAA
AGTCATGCAGGAAGGCGAAGGATGGGAACGGCCAAACGATGGCTCAGTCG
TTACTATAGCGGCACAGTTCTACCGGCCAGCCATGGACTCAAATCTGATA
GTTCCTTCGCCTGAGGGTGAGCCTTACCTTACAATTGAGGAAATCACTTT
TAAGGTTGGTGACGGTATTGTTATTGATGGCCTTGATCGTGTAGTTCAGT
CCATGAAGACAAAGGAGGCTGCGTTTGTCATTATCGAACCCCAGCACGCC
TTTGAGACTGCTCCTGATCTTCTCACGACGCAGTTTTCTGACAAAGGAGT
AACAAAAGAAACTAGGCTACTTGTGCACGTTTCTCTATCCAAGTTTGAAA
AGGCGAAGGATGTATGGAGCATGTCCACTGAGGAAAAATTGGAAGAGATG
AAGGCTAGGAAGGAAGTTGGAAATGGTCTGTTTAAGAGGGGCAGATACGC
AGCAGCGAAAAAGTCATATGATCGCGCAGTCGCATTTTTCGAATCCCCCA
CATCGGAACAAAGTGCAGACCTGAAAGCGAAGATCAATGAGCTTCTTATC
CAGTGCCACATCAATTTGGCGGTGTGCTTAGATCGCATGGGAGACGTACA
AAAAGTGATGCATCATTGTCGAAAGGCTCTTGAGATTGCGCCGTCGAACG
TTAAAGCGTTGTATCGTCAGGGTTGTGCGTATCTCAAGATGGACGACTTT
TACAATGCTAATTCCACTTTGAAATATGCGTTGCAATTGAGTCCTGGCAA
TGTAGAGATTCGGCGAAAGTTGAAAGAAGTGAAGGCCAAGCAACTCGCTC
AGGACGCCGCCGACAAGAAGTTGTATTCGAATCTTTTCGGTAGATTGAGC
AAGATGGAAGAAAAAGAAAACAAAAAAGCAACGACGCAGGAGAAAATTCA
CCCTGAGCACTTTGCGAAGGGAGCGGAGAAAGAAGCAAAACCAGCGGAGG
ATATCGAAATGAAGGACGCGCAGATTGTCGGAGAGACTTAA
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Coding sequence (CDS) from alignment at ScGOVlb_24229:753805..755595-

>Gvermi6961.t1 ID=Gvermi6961.t1|Name=Gvermi6961.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1791bp|location=Sequence derived from alignment at ScGOVlb_24229:753805..755595- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGACAAAAGAAGACGTTACCATTGAAACCTCCGAACCCACCCCGGACTC
AGAGTTCTCGCAGTCGGGTGATCTTACTGGAGATGGAGGCGTAATAAAAG
AGATTATTACCCATGGGCAGAACGCGTGGCAGAAGCCCGAAGATGGGGAC
GATGTGTCCATGCATTATCGCGGCACTTTGCTCGATGGAACTGAATTCGA
CAGCAGCTATGAGCGCTGCACGCCGTTCACGTTCAAGCTTGGAGAGGGAA
AAGTCATCAAGGGATGGGACATTGTTGGCAAGACAATGGCTAAGGGAGAG
AAAGCTAAGGTGACCCTCAAGCCAGAATACGCCTATGGCGAAAGCGGATC
ACCGCCCAAGATCCCTGCCAATGCCACCCTTGTATTCGAAATGGAGCTTC
TTTCGTGGGCCAGCAAACACGATGTATTTAGTGATGGACTCGTCACAAAG
ACTGAGATTGCGTCCGGAGACGGATGGGAACGGCCTGGTAAGCTTGATGA
GGTTACCCTTTCCGTAGAGTGTTCTCAAATGGATGCCGAAGGGAAAACCG
CAACGGCTGTGTTGTACAATGGAGACGTCACCTTTACAAATGGGAATGGA
CAGGTCCCGCCAGCATGGGAAAAAGTGGTTACAGATATGAAGAAAGACTC
CGTTGTCAGCCTTCTGTGTCGCGATCATCATGTGACTGGACCGGGCATCA
CATACGTTCCCGAAGGCACAGAATGTGTGGAGTACAAACTCTCCATGAAG
TCATGGAAGAAGGTCGATGACATTCATAAGGATGGCTCCCTCGTGAAGAA
AGTCATGCAGGAAGGCGAAGGATGGGAACGGCCAAACGATGGCTCAGTCG
TTACTATAGCGGCACAGTTCTACCGGCCAGCCATGGACTCAAATCTGATA
GTTCCTTCGCCTGAGGGTGAGCCTTACCTTACAATTGAGGAAATCACTTT
TAAGGTTGGTGACGGTATTGTTATTGATGGCCTTGATCGTGTAGTTCAGT
CCATGAAGACAAAGGAGGCTGCGTTTGTCATTATCGAACCCCAGCACGCC
TTTGAGACTGCTCCTGATCTTCTCACGACGCAGTTTTCTGACAAAGGAGT
AACAAAAGAAACTAGGCTACTTGTGCACGTTTCTCTATCCAAGTTTGAAA
AGGCGAAGGATGTATGGAGCATGTCCACTGAGGAAAAATTGGAAGAGATG
AAGGCTAGGAAGGAAGTTGGAAATGGTCTGTTTAAGAGGGGCAGATACGC
AGCAGCGAAAAAGTCATATGATCGCGCAGTCGCATTTTTCGAATCCCCCA
CATCGGAACAAAGTGCAGACCTGAAAGCGAAGATCAATGAGCTTCTTATC
CAGTGCCACATCAATTTGGCGGTGTGCTTAGATCGCATGGGAGACGTACA
AAAAGTGATGCATCATTGTCGAAAGGCTCTTGAGATTGCGCCGTCGAACG
TTAAAGCGTTGTATCGTCAGGGTTGTGCGTATCTCAAGATGGACGACTTT
TACAATGCTAATTCCACTTTGAAATATGCGTTGCAATTGAGTCCTGGCAA
TGTAGAGATTCGGCGAAAGTTGAAAGAAGTGAAGGCCAAGCAACTCGCTC
AGGACGCCGCCGACAAGAAGTTGTATTCGAATCTTTTCGGTAGATTGAGC
AAGATGGAAGAAAAAGAAAACAAAAAAGCAACGACGCAGGAGAAAATTCA
CCCTGAGCACTTTGCGAAGGGAGCGGAGAAAGAAGCAAAACCAGCGGAGG
ATATCGAAATGAAGGACGCGCAGATTGTCGGAGAGACTTAA
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