Gvermi6956.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi6956.t1
Unique NameGvermi6956.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length345
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24229contigScGOVlb_24229:743449..744561 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005707753.1
Preferred nameEIF3H
PFAMsJAB
Max annot lvl2759|Eukaryota
KEGG rclassRC02636
KEGG koko:K03247,ko:K15744
KEGG ReactionR09655
KEGG Pathwayko00906,ko01100,ko01110,ko03013,ko05162,map00906,map01100,map01110,map03013,map05162
KEGG ModuleM00097
GOsGO:0001101,GO:0001944,GO:0002181,GO:0002183,GO:0003674,GO:0003676,GO:0003723,GO:0003743,GO:0003824,GO:0004843,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0005840,GO:0005844,GO:0005852,GO:0006412,GO:0006413,GO:0006417,GO:0006446,GO:0006464,GO:0006508,GO:0006518,GO:0006807,GO:0007275,GO:0007399,GO:0007417,GO:0007420,GO:0007507,GO:0008135,GO:0008150,GO:0008152,GO:0008180,GO:0008233,GO:0008234,GO:0008593,GO:0009058,GO:0009059,GO:0009719,GO:0009725,GO:0009733,GO:0009737,GO:0009743,GO:0009744,GO:0009746,GO:0009749,GO:0009888,GO:0009889,GO:0009891,GO:0009893,GO:0009966,GO:0009967,GO:0009987,GO:0010033,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010608,GO:0010628,GO:0010646,GO:0010647,GO:0016282,GO:0016787,GO:0019222,GO:0019538,GO:0019783,GO:0023051,GO:0023056,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0032268,GO:0032270,GO:0032501,GO:0032502,GO:0032991,GO:0033993,GO:0034248,GO:0034250,GO:0034284,GO:0034285,GO:0034286,GO:0034641,GO:0034645,GO:0036211,GO:0036459,GO:0042221,GO:0042788,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043412,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045727,GO:0045747,GO:0045948,GO:0048513,GO:0048518,GO:0048522,GO:0048583,GO:0048584,GO:0048731,GO:0048856,GO:0048880,GO:0048882,GO:0048925,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051246,GO:0051247,GO:0060255,GO:0060322,GO:0065007,GO:0070011,GO:0070647,GO:0070993,GO:0071541,GO:0071704,GO:0072358,GO:0072359,GO:0080090,GO:0097159,GO:0097305,GO:0101005,GO:0140096,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901700,GO:1990904,GO:2000112
Evalue1e-75
EggNOG OGsKOG1560@1|root,KOG1560@2759|Eukaryota
EC5.2.1.12
Descriptiontranslation initiation factor activity
COG categoryJ
BRITEko00000,ko00001,ko00002,ko01000,ko03012,ko04147
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi6956Gvermi6956Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_24229 743449..744561 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6956.t1Gvermi6956.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_24229 743449..744561 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6956.t1.stop1Gvermi6956.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_24229 743449..743451 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6956.t1.CDS1Gvermi6956.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24229 743449..744420 -
Gvermi6956.t1.CDS2Gvermi6956.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24229 744499..744561 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6956.t1.exon1Gvermi6956.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24229 743449..744420 -
Gvermi6956.t1.exon2Gvermi6956.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24229 744499..744561 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6956.t1.intron1Gvermi6956.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_24229 744421..744498 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6956.t1.start1Gvermi6956.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_24229 744559..744561 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi6956.t1 ID=Gvermi6956.t1|Name=Gvermi6956.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=345bp
MENAIDLRPSSQIGKVRLEGITIMKIIKHCHDNFPMTVMGQLLGMDVDDT
LEITNCYPFMSQPTSATTAGPDGIDVTSFEREQQQYQRDMMWCVREVNID
HQVVGWYQSTGSQMGSFLSSQWIDTQYNYQKHLRNIVCLIYDPVRTEDGL
LSIHAYRLTKHFMNLMKKGEFNSLGFANSDVLSNSIIEEVPISLHNSSLI
NASLVELDQADEFTGENDVELARLSISDKPVLEQSMEFLICELDTLGKEQ
SKYSYFMRNLVRSQGQLLEKMRKRRAENKKREANGEELLPDDEDVLQMLE
KEPARLDCKVLLKDLDSYVESIKSLASEGIVKQYGVSAVQAGDE*
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spliced messenger RNA

>Gvermi6956.t1 ID=Gvermi6956.t1|Name=Gvermi6956.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1035bp|location=Sequence derived from alignment at ScGOVlb_24229:743449..744561- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGAATGCGATTGATTTGCGCCCATCTTCACAAATTGGGAAAGTTCG
TCTAGAAGGAATTACGATAATGAAAATTATCAAGCACTGCCATGACAACT
TTCCGATGACCGTCATGGGACAGCTGCTCGGTATGGATGTTGATGATACC
CTAGAAATCACTAATTGCTATCCTTTCATGTCACAACCAACAAGCGCCAC
GACTGCTGGGCCGGACGGAATCGACGTCACATCATTTGAGAGAGAACAGC
AACAATACCAGCGAGACATGATGTGGTGTGTCCGTGAAGTGAATATCGAT
CATCAAGTTGTCGGATGGTACCAAAGCACCGGTTCACAAATGGGCTCCTT
CTTGTCGTCTCAGTGGATCGATACCCAGTATAACTACCAAAAGCATCTGA
GGAATATTGTGTGTCTCATATACGATCCAGTGAGAACCGAAGACGGATTG
CTGTCTATTCATGCTTATCGACTGACCAAGCACTTCATGAATCTCATGAA
AAAGGGTGAATTCAATTCTCTTGGTTTTGCAAATTCTGACGTTCTGTCGA
ATTCAATAATCGAAGAAGTTCCTATCTCGTTGCATAACTCAAGTTTGATT
AATGCCTCTCTTGTAGAGCTCGACCAGGCGGATGAGTTCACAGGGGAGAA
TGACGTAGAACTTGCACGACTGTCGATAAGTGACAAACCAGTCTTGGAGC
AAAGCATGGAGTTTTTGATATGTGAGCTAGATACTCTAGGAAAAGAACAA
AGCAAATACTCATACTTTATGAGAAACCTTGTGAGAAGCCAAGGTCAGTT
GTTAGAGAAAATGAGAAAACGAAGAGCAGAAAACAAGAAGAGGGAAGCCA
ATGGGGAAGAGCTACTTCCGGACGATGAAGACGTACTTCAGATGCTTGAA
AAAGAGCCAGCTCGACTGGACTGCAAAGTTCTTCTCAAGGACCTTGATTC
TTATGTGGAAAGTATTAAGTCACTTGCAAGCGAAGGAATTGTGAAGCAGT
ACGGCGTCTCAGCTGTACAAGCTGGAGATGAATAG
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protein sequence of Gvermi6956.t1

>Gvermi6956.t1 ID=Gvermi6956.t1|Name=Gvermi6956.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=345bp
MENAIDLRPSSQIGKVRLEGITIMKIIKHCHDNFPMTVMGQLLGMDVDDT
LEITNCYPFMSQPTSATTAGPDGIDVTSFEREQQQYQRDMMWCVREVNID
HQVVGWYQSTGSQMGSFLSSQWIDTQYNYQKHLRNIVCLIYDPVRTEDGL
LSIHAYRLTKHFMNLMKKGEFNSLGFANSDVLSNSIIEEVPISLHNSSLI
NASLVELDQADEFTGENDVELARLSISDKPVLEQSMEFLICELDTLGKEQ
SKYSYFMRNLVRSQGQLLEKMRKRRAENKKREANGEELLPDDEDVLQMLE
KEPARLDCKVLLKDLDSYVESIKSLASEGIVKQYGVSAVQAGDE*
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mRNA from alignment at ScGOVlb_24229:743449..744561-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi6956.t1 ID=Gvermi6956.t1|Name=Gvermi6956.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1113bp|location=Sequence derived from alignment at ScGOVlb_24229:743449..744561- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGAGAATGCGATTGATTTGCGCCCATCTTCACAAATTGGGAAAGTTCG
TCTAGAAGGAATTGTAAGTTGTTATGTGTGTTTCAGCAACGCTGAGGGAG
ATAGAAATAGACACTAACATGATTTTGTTTCATATTCGTAGACGATAATG
AAAATTATCAAGCACTGCCATGACAACTTTCCGATGACCGTCATGGGACA
GCTGCTCGGTATGGATGTTGATGATACCCTAGAAATCACTAATTGCTATC
CTTTCATGTCACAACCAACAAGCGCCACGACTGCTGGGCCGGACGGAATC
GACGTCACATCATTTGAGAGAGAACAGCAACAATACCAGCGAGACATGAT
GTGGTGTGTCCGTGAAGTGAATATCGATCATCAAGTTGTCGGATGGTACC
AAAGCACCGGTTCACAAATGGGCTCCTTCTTGTCGTCTCAGTGGATCGAT
ACCCAGTATAACTACCAAAAGCATCTGAGGAATATTGTGTGTCTCATATA
CGATCCAGTGAGAACCGAAGACGGATTGCTGTCTATTCATGCTTATCGAC
TGACCAAGCACTTCATGAATCTCATGAAAAAGGGTGAATTCAATTCTCTT
GGTTTTGCAAATTCTGACGTTCTGTCGAATTCAATAATCGAAGAAGTTCC
TATCTCGTTGCATAACTCAAGTTTGATTAATGCCTCTCTTGTAGAGCTCG
ACCAGGCGGATGAGTTCACAGGGGAGAATGACGTAGAACTTGCACGACTG
TCGATAAGTGACAAACCAGTCTTGGAGCAAAGCATGGAGTTTTTGATATG
TGAGCTAGATACTCTAGGAAAAGAACAAAGCAAATACTCATACTTTATGA
GAAACCTTGTGAGAAGCCAAGGTCAGTTGTTAGAGAAAATGAGAAAACGA
AGAGCAGAAAACAAGAAGAGGGAAGCCAATGGGGAAGAGCTACTTCCGGA
CGATGAAGACGTACTTCAGATGCTTGAAAAAGAGCCAGCTCGACTGGACT
GCAAAGTTCTTCTCAAGGACCTTGATTCTTATGTGGAAAGTATTAAGTCA
CTTGCAAGCGAAGGAATTGTGAAGCAGTACGGCGTCTCAGCTGTACAAGC
TGGAGATGAATAG
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Coding sequence (CDS) from alignment at ScGOVlb_24229:743449..744561-

>Gvermi6956.t1 ID=Gvermi6956.t1|Name=Gvermi6956.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1035bp|location=Sequence derived from alignment at ScGOVlb_24229:743449..744561- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGAGAATGCGATTGATTTGCGCCCATCTTCACAAATTGGGAAAGTTCG
TCTAGAAGGAATTACGATAATGAAAATTATCAAGCACTGCCATGACAACT
TTCCGATGACCGTCATGGGACAGCTGCTCGGTATGGATGTTGATGATACC
CTAGAAATCACTAATTGCTATCCTTTCATGTCACAACCAACAAGCGCCAC
GACTGCTGGGCCGGACGGAATCGACGTCACATCATTTGAGAGAGAACAGC
AACAATACCAGCGAGACATGATGTGGTGTGTCCGTGAAGTGAATATCGAT
CATCAAGTTGTCGGATGGTACCAAAGCACCGGTTCACAAATGGGCTCCTT
CTTGTCGTCTCAGTGGATCGATACCCAGTATAACTACCAAAAGCATCTGA
GGAATATTGTGTGTCTCATATACGATCCAGTGAGAACCGAAGACGGATTG
CTGTCTATTCATGCTTATCGACTGACCAAGCACTTCATGAATCTCATGAA
AAAGGGTGAATTCAATTCTCTTGGTTTTGCAAATTCTGACGTTCTGTCGA
ATTCAATAATCGAAGAAGTTCCTATCTCGTTGCATAACTCAAGTTTGATT
AATGCCTCTCTTGTAGAGCTCGACCAGGCGGATGAGTTCACAGGGGAGAA
TGACGTAGAACTTGCACGACTGTCGATAAGTGACAAACCAGTCTTGGAGC
AAAGCATGGAGTTTTTGATATGTGAGCTAGATACTCTAGGAAAAGAACAA
AGCAAATACTCATACTTTATGAGAAACCTTGTGAGAAGCCAAGGTCAGTT
GTTAGAGAAAATGAGAAAACGAAGAGCAGAAAACAAGAAGAGGGAAGCCA
ATGGGGAAGAGCTACTTCCGGACGATGAAGACGTACTTCAGATGCTTGAA
AAAGAGCCAGCTCGACTGGACTGCAAAGTTCTTCTCAAGGACCTTGATTC
TTATGTGGAAAGTATTAAGTCACTTGCAAGCGAAGGAATTGTGAAGCAGT
ACGGCGTCTCAGCTGTACAAGCTGGAGATGAATAG
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