Gvermi6951.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi6951.t1
Unique NameGvermi6951.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length216
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24229contigScGOVlb_24229:729142..729887 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog5808.XP_002142337.1
Preferred namerab1
PFAMsRas
Max annot lvl5794|Apicomplexa
KEGG koko:K07874
KEGG Pathwayko05134,map05134
Evalue2.43e-63
EggNOG OGsKOG0084@1|root,KOG0084@2759|Eukaryota,3Y9SJ@5794|Apicomplexa,3YJGF@5796|Coccidia
DescriptionSignal recognition particle receptor beta subunit
COG categoryU
BRITEko00000,ko00001,ko04031,ko04131,ko04147
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi6951Gvermi6951Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_24229 729142..729887 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6951.t1Gvermi6951.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_24229 729142..729887 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6951.t1.stop1Gvermi6951.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_24229 729142..729144 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6951.t1.CDS1Gvermi6951.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24229 729142..729241 -
Gvermi6951.t1.CDS2Gvermi6951.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24229 729340..729887 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6951.t1.exon1Gvermi6951.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24229 729142..729241 -
Gvermi6951.t1.exon2Gvermi6951.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24229 729340..729887 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6951.t1.intron1Gvermi6951.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_24229 729242..729339 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6951.t1.start1Gvermi6951.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_24229 729885..729887 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi6951.t1 ID=Gvermi6951.t1|Name=Gvermi6951.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=216bp
MTNIEMPAPASVEYHYLYKLLLIGDSGVGKSCVLTRFADSTYEECQTSTI
GVDFKIRTIGIEDKSVKLQIWDSAGQERFRTIAAAYYRGAHGVGIVFDIT
DEKSFQSVEGSWIEEVENNTTSPVRMLLIGNKCDLEEEREVTKEEAEALA
KKYDMSYVETSAKTAENVYEAFATISKEIYDSNSVNGIESLAQQMEAIRV
IDGTRFYDKKPKCGC*
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spliced messenger RNA

>Gvermi6951.t1 ID=Gvermi6951.t1|Name=Gvermi6951.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=648bp|location=Sequence derived from alignment at ScGOVlb_24229:729142..729887- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACGAACATTGAGATGCCTGCGCCAGCCTCGGTGGAATATCATTATCT
GTATAAGTTGCTTCTTATCGGAGACTCGGGCGTGGGTAAATCTTGTGTTC
TCACGCGTTTTGCAGATTCGACGTACGAAGAGTGTCAAACAAGCACAATC
GGGGTGGACTTCAAAATACGCACCATAGGGATTGAAGACAAGAGCGTTAA
ACTTCAGATATGGGACTCTGCTGGGCAAGAACGGTTTCGAACGATTGCTG
CAGCATATTACAGGGGTGCACATGGAGTAGGCATCGTTTTCGACATCACG
GATGAAAAGAGCTTCCAAAGTGTGGAAGGGTCCTGGATTGAAGAGGTAGA
AAACAACACTACATCACCTGTTCGCATGCTACTGATTGGGAACAAATGCG
ACTTGGAGGAGGAACGAGAGGTAACGAAGGAAGAAGCTGAGGCACTGGCC
AAAAAGTACGATATGAGTTACGTCGAAACATCCGCAAAGACAGCGGAGAA
TGTGTATGAGGCATTTGCAACAATCTCGAAAGAAATTTACGACAGCAACA
GTGTAAACGGCATAGAATCTTTGGCTCAACAGATGGAAGCAATACGAGTA
ATCGACGGTACGAGGTTTTATGATAAGAAGCCTAAATGCGGGTGTTAG
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protein sequence of Gvermi6951.t1

>Gvermi6951.t1 ID=Gvermi6951.t1|Name=Gvermi6951.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=216bp
MTNIEMPAPASVEYHYLYKLLLIGDSGVGKSCVLTRFADSTYEECQTSTI
GVDFKIRTIGIEDKSVKLQIWDSAGQERFRTIAAAYYRGAHGVGIVFDIT
DEKSFQSVEGSWIEEVENNTTSPVRMLLIGNKCDLEEEREVTKEEAEALA
KKYDMSYVETSAKTAENVYEAFATISKEIYDSNSVNGIESLAQQMEAIRV
IDGTRFYDKKPKCGC*
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mRNA from alignment at ScGOVlb_24229:729142..729887-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi6951.t1 ID=Gvermi6951.t1|Name=Gvermi6951.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=746bp|location=Sequence derived from alignment at ScGOVlb_24229:729142..729887- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGACGAACATTGAGATGCCTGCGCCAGCCTCGGTGGAATATCATTATCT
GTATAAGTTGCTTCTTATCGGAGACTCGGGCGTGGGTAAATCTTGTGTTC
TCACGCGTTTTGCAGATTCGACGTACGAAGAGTGTCAAACAAGCACAATC
GGGGTGGACTTCAAAATACGCACCATAGGGATTGAAGACAAGAGCGTTAA
ACTTCAGATATGGGACTCTGCTGGGCAAGAACGGTTTCGAACGATTGCTG
CAGCATATTACAGGGGTGCACATGGAGTAGGCATCGTTTTCGACATCACG
GATGAAAAGAGCTTCCAAAGTGTGGAAGGGTCCTGGATTGAAGAGGTAGA
AAACAACACTACATCACCTGTTCGCATGCTACTGATTGGGAACAAATGCG
ACTTGGAGGAGGAACGAGAGGTAACGAAGGAAGAAGCTGAGGCACTGGCC
AAAAAGTACGATATGAGTTACGTCGAAACATCCGCAAAGACAGCGGAGAA
TGTGTATGAGGCATTTGCAACAATCTCGAAAGAAATTTACGACAGCAAGT
ACGTTTGTTCTCCTTTTTGCGTTGAATGTTTGCGTTAGATGGAGATGTGC
CTTACTGACGTTGTTGGTTTGTTTGCGAATGGGGCGGACTAAACAGCAGT
GTAAACGGCATAGAATCTTTGGCTCAACAGATGGAAGCAATACGAGTAAT
CGACGGTACGAGGTTTTATGATAAGAAGCCTAAATGCGGGTGTTAG
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Coding sequence (CDS) from alignment at ScGOVlb_24229:729142..729887-

>Gvermi6951.t1 ID=Gvermi6951.t1|Name=Gvermi6951.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=648bp|location=Sequence derived from alignment at ScGOVlb_24229:729142..729887- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGACGAACATTGAGATGCCTGCGCCAGCCTCGGTGGAATATCATTATCT
GTATAAGTTGCTTCTTATCGGAGACTCGGGCGTGGGTAAATCTTGTGTTC
TCACGCGTTTTGCAGATTCGACGTACGAAGAGTGTCAAACAAGCACAATC
GGGGTGGACTTCAAAATACGCACCATAGGGATTGAAGACAAGAGCGTTAA
ACTTCAGATATGGGACTCTGCTGGGCAAGAACGGTTTCGAACGATTGCTG
CAGCATATTACAGGGGTGCACATGGAGTAGGCATCGTTTTCGACATCACG
GATGAAAAGAGCTTCCAAAGTGTGGAAGGGTCCTGGATTGAAGAGGTAGA
AAACAACACTACATCACCTGTTCGCATGCTACTGATTGGGAACAAATGCG
ACTTGGAGGAGGAACGAGAGGTAACGAAGGAAGAAGCTGAGGCACTGGCC
AAAAAGTACGATATGAGTTACGTCGAAACATCCGCAAAGACAGCGGAGAA
TGTGTATGAGGCATTTGCAACAATCTCGAAAGAAATTTACGACAGCAACA
GTGTAAACGGCATAGAATCTTTGGCTCAACAGATGGAAGCAATACGAGTA
ATCGACGGTACGAGGTTTTATGATAAGAAGCCTAAATGCGGGTGTTAG
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