Gvermi6947.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi6947.t1
Unique NameGvermi6947.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length467
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24229contigScGOVlb_24229:719120..720520 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1056512.D515_01378
PFAMsFG-GAP_2
Max annot lvl135623|Vibrionales
Evalue2.09e-23
EggNOG OGsCOG2304@1|root,COG2304@2|Bacteria,1PDQV@1224|Proteobacteria,1RPGD@1236|Gammaproteobacteria,1XYT2@135623|Vibrionales
DescriptionIntegrin alpha (beta-propellor repeats).
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi6947Gvermi6947Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_24229 719120..720520 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6947.t1.stop1Gvermi6947.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_24229 719120..719122 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6947.t1.CDS1Gvermi6947.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24229 719120..720520 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6947.t1.exon1Gvermi6947.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24229 719120..720520 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6947.t1.start1Gvermi6947.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_24229 720518..720520 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6947.t1Gvermi6947.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_24229 719120..720520 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi6947.t1 ID=Gvermi6947.t1|Name=Gvermi6947.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=467bp
MHFVTISLALSFLSAFAHAGRLFLRPPAKDRTNNLRFGQSTCISHDGMRV
VVGASGYDRYRGALYIYDLVTAPGDHASHWKRTLLAPNDTESAQQKMPHQ
LRVLPRGSAFGFSCAMSADSRRLVIGAPGHHTQRGAVFVFGYSSQRRGWK
EVERLSMGDARPADSFGWAVTVNHDCTVLATSAKGKKANNGEVFVYDCNL
GCVQCKLISRVEAPDYTDSTGPRGIRIRNNFGTSMSMNAKGDVLLVSSIG
YDKERGAVYIFRRAIRGEKWHLTQRLLSPKQQQRGFFGYRLAMDHDAKHI
VVGADGEDGYTGAVYVFQNQMNSSDQYEFVYEINAEEAEEEHNFGASIAM
SGNGRTLIVGAPGAKKGKLKDHGLLYVYEKVKGAKHEVWTLAETVSLPAE
HSSEGNYFGWNVDMSASGRKYVSSAPESYGGTGLVAFGDFAVSGRSMMNS
ASLIHDEPAGVVKEEL*
back to top

spliced messenger RNA

>Gvermi6947.t1 ID=Gvermi6947.t1|Name=Gvermi6947.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1401bp|location=Sequence derived from alignment at ScGOVlb_24229:719120..720520- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCATTTCGTGACCATCTCCCTGGCGCTTTCTTTCCTTAGCGCGTTTGC
ACACGCCGGCCGTCTGTTCCTGCGTCCGCCTGCCAAGGACCGCACCAACA
ACCTCCGCTTCGGTCAGAGCACGTGCATCAGCCACGATGGAATGCGCGTC
GTCGTAGGCGCCAGCGGATACGATCGCTATAGAGGTGCGCTATACATTTA
CGACCTCGTTACTGCGCCAGGCGATCATGCCAGTCATTGGAAGCGCACGC
TGCTTGCCCCAAATGATACGGAGAGCGCTCAGCAGAAGATGCCACATCAG
TTGAGAGTGCTTCCAAGGGGGAGCGCGTTCGGCTTCTCTTGCGCCATGTC
TGCCGATTCCCGTCGCTTAGTTATCGGCGCCCCAGGCCATCACACTCAAC
GTGGCGCCGTTTTCGTGTTTGGTTATTCGTCGCAGCGTCGCGGATGGAAG
GAGGTGGAACGCCTGAGTATGGGCGATGCGCGACCGGCAGACTCCTTCGG
CTGGGCCGTGACTGTCAATCATGACTGCACGGTGTTGGCAACCAGTGCAA
AGGGTAAAAAGGCCAATAATGGAGAGGTTTTCGTGTACGACTGCAATTTG
GGATGTGTCCAGTGCAAACTCATCTCTCGCGTCGAGGCCCCGGACTATAC
CGACAGCACTGGGCCACGTGGGATTCGCATCCGAAATAACTTTGGCACCA
GTATGTCCATGAATGCAAAAGGTGATGTGTTGCTGGTAAGCAGCATTGGA
TACGATAAGGAACGCGGGGCCGTGTATATATTTAGACGTGCCATACGCGG
TGAAAAATGGCACTTGACGCAGCGCCTTTTATCCCCCAAGCAACAACAAC
GAGGCTTCTTTGGCTATCGACTCGCAATGGATCACGATGCCAAACACATT
GTCGTCGGCGCTGATGGGGAAGACGGGTACACTGGCGCAGTATACGTGTT
CCAGAACCAAATGAATAGCAGCGACCAATACGAGTTCGTGTATGAGATCA
ACGCAGAAGAGGCTGAAGAGGAGCACAACTTTGGAGCATCTATAGCCATG
TCTGGAAATGGACGCACGCTGATAGTTGGGGCGCCCGGCGCCAAAAAAGG
AAAGCTGAAGGATCACGGGCTGTTGTATGTTTACGAAAAGGTGAAAGGGG
CAAAGCATGAAGTGTGGACGCTAGCTGAAACTGTCTCACTGCCGGCGGAA
CATTCTTCAGAGGGCAACTATTTCGGATGGAATGTTGACATGAGCGCTAG
CGGAAGGAAGTATGTAAGCAGCGCGCCGGAATCATACGGCGGCACCGGAT
TGGTGGCGTTTGGAGACTTTGCCGTTTCCGGCAGAAGTATGATGAATTCT
GCGTCGTTGATTCACGACGAGCCTGCGGGCGTTGTGAAGGAAGAACTGTA
A
back to top

protein sequence of Gvermi6947.t1

>Gvermi6947.t1 ID=Gvermi6947.t1|Name=Gvermi6947.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=467bp
MHFVTISLALSFLSAFAHAGRLFLRPPAKDRTNNLRFGQSTCISHDGMRV
VVGASGYDRYRGALYIYDLVTAPGDHASHWKRTLLAPNDTESAQQKMPHQ
LRVLPRGSAFGFSCAMSADSRRLVIGAPGHHTQRGAVFVFGYSSQRRGWK
EVERLSMGDARPADSFGWAVTVNHDCTVLATSAKGKKANNGEVFVYDCNL
GCVQCKLISRVEAPDYTDSTGPRGIRIRNNFGTSMSMNAKGDVLLVSSIG
YDKERGAVYIFRRAIRGEKWHLTQRLLSPKQQQRGFFGYRLAMDHDAKHI
VVGADGEDGYTGAVYVFQNQMNSSDQYEFVYEINAEEAEEEHNFGASIAM
SGNGRTLIVGAPGAKKGKLKDHGLLYVYEKVKGAKHEVWTLAETVSLPAE
HSSEGNYFGWNVDMSASGRKYVSSAPESYGGTGLVAFGDFAVSGRSMMNS
ASLIHDEPAGVVKEEL*
back to top

mRNA from alignment at ScGOVlb_24229:719120..720520-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi6947.t1 ID=Gvermi6947.t1|Name=Gvermi6947.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1401bp|location=Sequence derived from alignment at ScGOVlb_24229:719120..720520- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCATTTCGTGACCATCTCCCTGGCGCTTTCTTTCCTTAGCGCGTTTGC
ACACGCCGGCCGTCTGTTCCTGCGTCCGCCTGCCAAGGACCGCACCAACA
ACCTCCGCTTCGGTCAGAGCACGTGCATCAGCCACGATGGAATGCGCGTC
GTCGTAGGCGCCAGCGGATACGATCGCTATAGAGGTGCGCTATACATTTA
CGACCTCGTTACTGCGCCAGGCGATCATGCCAGTCATTGGAAGCGCACGC
TGCTTGCCCCAAATGATACGGAGAGCGCTCAGCAGAAGATGCCACATCAG
TTGAGAGTGCTTCCAAGGGGGAGCGCGTTCGGCTTCTCTTGCGCCATGTC
TGCCGATTCCCGTCGCTTAGTTATCGGCGCCCCAGGCCATCACACTCAAC
GTGGCGCCGTTTTCGTGTTTGGTTATTCGTCGCAGCGTCGCGGATGGAAG
GAGGTGGAACGCCTGAGTATGGGCGATGCGCGACCGGCAGACTCCTTCGG
CTGGGCCGTGACTGTCAATCATGACTGCACGGTGTTGGCAACCAGTGCAA
AGGGTAAAAAGGCCAATAATGGAGAGGTTTTCGTGTACGACTGCAATTTG
GGATGTGTCCAGTGCAAACTCATCTCTCGCGTCGAGGCCCCGGACTATAC
CGACAGCACTGGGCCACGTGGGATTCGCATCCGAAATAACTTTGGCACCA
GTATGTCCATGAATGCAAAAGGTGATGTGTTGCTGGTAAGCAGCATTGGA
TACGATAAGGAACGCGGGGCCGTGTATATATTTAGACGTGCCATACGCGG
TGAAAAATGGCACTTGACGCAGCGCCTTTTATCCCCCAAGCAACAACAAC
GAGGCTTCTTTGGCTATCGACTCGCAATGGATCACGATGCCAAACACATT
GTCGTCGGCGCTGATGGGGAAGACGGGTACACTGGCGCAGTATACGTGTT
CCAGAACCAAATGAATAGCAGCGACCAATACGAGTTCGTGTATGAGATCA
ACGCAGAAGAGGCTGAAGAGGAGCACAACTTTGGAGCATCTATAGCCATG
TCTGGAAATGGACGCACGCTGATAGTTGGGGCGCCCGGCGCCAAAAAAGG
AAAGCTGAAGGATCACGGGCTGTTGTATGTTTACGAAAAGGTGAAAGGGG
CAAAGCATGAAGTGTGGACGCTAGCTGAAACTGTCTCACTGCCGGCGGAA
CATTCTTCAGAGGGCAACTATTTCGGATGGAATGTTGACATGAGCGCTAG
CGGAAGGAAGTATGTAAGCAGCGCGCCGGAATCATACGGCGGCACCGGAT
TGGTGGCGTTTGGAGACTTTGCCGTTTCCGGCAGAAGTATGATGAATTCT
GCGTCGTTGATTCACGACGAGCCTGCGGGCGTTGTGAAGGAAGAACTGTA
A
back to top

Coding sequence (CDS) from alignment at ScGOVlb_24229:719120..720520-

>Gvermi6947.t1 ID=Gvermi6947.t1|Name=Gvermi6947.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1401bp|location=Sequence derived from alignment at ScGOVlb_24229:719120..720520- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCATTTCGTGACCATCTCCCTGGCGCTTTCTTTCCTTAGCGCGTTTGC
ACACGCCGGCCGTCTGTTCCTGCGTCCGCCTGCCAAGGACCGCACCAACA
ACCTCCGCTTCGGTCAGAGCACGTGCATCAGCCACGATGGAATGCGCGTC
GTCGTAGGCGCCAGCGGATACGATCGCTATAGAGGTGCGCTATACATTTA
CGACCTCGTTACTGCGCCAGGCGATCATGCCAGTCATTGGAAGCGCACGC
TGCTTGCCCCAAATGATACGGAGAGCGCTCAGCAGAAGATGCCACATCAG
TTGAGAGTGCTTCCAAGGGGGAGCGCGTTCGGCTTCTCTTGCGCCATGTC
TGCCGATTCCCGTCGCTTAGTTATCGGCGCCCCAGGCCATCACACTCAAC
GTGGCGCCGTTTTCGTGTTTGGTTATTCGTCGCAGCGTCGCGGATGGAAG
GAGGTGGAACGCCTGAGTATGGGCGATGCGCGACCGGCAGACTCCTTCGG
CTGGGCCGTGACTGTCAATCATGACTGCACGGTGTTGGCAACCAGTGCAA
AGGGTAAAAAGGCCAATAATGGAGAGGTTTTCGTGTACGACTGCAATTTG
GGATGTGTCCAGTGCAAACTCATCTCTCGCGTCGAGGCCCCGGACTATAC
CGACAGCACTGGGCCACGTGGGATTCGCATCCGAAATAACTTTGGCACCA
GTATGTCCATGAATGCAAAAGGTGATGTGTTGCTGGTAAGCAGCATTGGA
TACGATAAGGAACGCGGGGCCGTGTATATATTTAGACGTGCCATACGCGG
TGAAAAATGGCACTTGACGCAGCGCCTTTTATCCCCCAAGCAACAACAAC
GAGGCTTCTTTGGCTATCGACTCGCAATGGATCACGATGCCAAACACATT
GTCGTCGGCGCTGATGGGGAAGACGGGTACACTGGCGCAGTATACGTGTT
CCAGAACCAAATGAATAGCAGCGACCAATACGAGTTCGTGTATGAGATCA
ACGCAGAAGAGGCTGAAGAGGAGCACAACTTTGGAGCATCTATAGCCATG
TCTGGAAATGGACGCACGCTGATAGTTGGGGCGCCCGGCGCCAAAAAAGG
AAAGCTGAAGGATCACGGGCTGTTGTATGTTTACGAAAAGGTGAAAGGGG
CAAAGCATGAAGTGTGGACGCTAGCTGAAACTGTCTCACTGCCGGCGGAA
CATTCTTCAGAGGGCAACTATTTCGGATGGAATGTTGACATGAGCGCTAG
CGGAAGGAAGTATGTAAGCAGCGCGCCGGAATCATACGGCGGCACCGGAT
TGGTGGCGTTTGGAGACTTTGCCGTTTCCGGCAGAAGTATGATGAATTCT
GCGTCGTTGATTCACGACGAGCCTGCGGGCGTTGTGAAGGAAGAACTGTA
A
back to top