Gvermi6946.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi6946.t1
Unique NameGvermi6946.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length482
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24229contigScGOVlb_24229:714848..716293 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog67593.Physo138974
Max annot lvl4776|Peronosporales
Evalue4.38e-10
EggNOG OGs2E9IX@1|root,2RZW8@2759|Eukaryota,3QIUS@4776|Peronosporales
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi6946Gvermi6946Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_24229 714848..716293 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6946.t1.stop1Gvermi6946.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_24229 714848..714850 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6946.t1.CDS1Gvermi6946.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24229 714848..716293 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6946.t1.exon1Gvermi6946.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24229 714848..716293 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6946.t1.start1Gvermi6946.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_24229 716291..716293 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6946.t1Gvermi6946.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_24229 714848..716293 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi6946.t1 ID=Gvermi6946.t1|Name=Gvermi6946.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=482bp
MAGGRRPSSYVSGARHSSGIDRQHVQEALTSPPLASATGPSLPPWIPSIW
QPAPVQTPSQRVPREKHASVDPSSVLAAALDTAVQSAVERALGGAAGAAI
STSQLTASSSNSDNGTEDETSQPLSQRETELHDLVAALRTKLHQRDQDVS
SLQNRMDNLEKSLQQQEALSQTHIQHSKTFIRERLSETRWELDNNVQAYI
VPMKKKIEAAEKLVCSQKNYNQDVSHLYACSRLINSNFANFRSYVSGEFE
KYTAKMKHHEQSFKNISEKLASIVSDAASSNPDIEQVRRSVEAATESLAG
VRSKLKKIETQLGEVSKQAEDSIALGSAFEESIRAGLDEITENVSSLYCT
VTEIKKALPSDDTGSCNQPSSELTSKVDSLETNLKALKRLIESNLRTQWS
AESIVKEQVSLITKHVCVAMRQYTARRISENNALIDKALRARIPEYAKND
DQFVLVREEDLEGNESVGIHRSQQDSSQTES*
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spliced messenger RNA

>Gvermi6946.t1 ID=Gvermi6946.t1|Name=Gvermi6946.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1446bp|location=Sequence derived from alignment at ScGOVlb_24229:714848..716293- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCAGGCGGACGCCGTCCGTCCAGCTACGTCTCTGGTGCGCGACACAG
CTCTGGAATAGACCGCCAGCACGTGCAGGAAGCGCTCACGAGCCCGCCAC
TAGCCTCTGCTACGGGGCCTTCCTTACCGCCGTGGATTCCTTCCATATGG
CAGCCTGCTCCAGTTCAAACGCCCTCACAACGAGTGCCTAGGGAGAAGCA
CGCAAGTGTGGACCCTTCTTCCGTGCTTGCCGCCGCGCTTGACACTGCCG
TGCAGTCAGCTGTTGAACGTGCGTTGGGAGGCGCTGCTGGTGCTGCCATT
TCCACCTCGCAACTTACCGCCTCCTCTTCGAACTCAGATAACGGCACAGA
GGATGAAACATCGCAACCTCTCTCCCAACGCGAAACCGAGTTGCACGACC
TCGTCGCGGCGCTCAGGACCAAGTTGCATCAGCGCGATCAAGACGTTTCA
TCACTGCAAAACAGAATGGACAACCTAGAGAAATCTTTGCAGCAACAAGA
GGCCCTCTCGCAAACTCATATTCAGCATTCAAAAACCTTCATTCGCGAGC
GTCTTTCCGAAACCCGCTGGGAGTTGGACAACAACGTTCAGGCTTATATC
GTACCCATGAAGAAGAAAATAGAAGCAGCGGAGAAGCTAGTATGCTCGCA
AAAGAACTACAACCAGGATGTTTCTCATCTGTACGCGTGTTCCAGGCTAA
TCAACTCCAACTTTGCGAACTTTCGATCATATGTATCCGGTGAATTCGAA
AAATACACCGCGAAGATGAAACATCATGAGCAGTCTTTCAAAAACATTAG
TGAGAAACTAGCTTCGATTGTTTCTGATGCTGCCTCATCAAATCCGGACA
TCGAACAAGTGCGGCGAAGCGTAGAGGCTGCAACGGAGAGTTTGGCAGGT
GTTCGCTCTAAGCTGAAGAAGATTGAAACCCAGTTAGGAGAGGTGTCCAA
ACAGGCTGAAGATTCCATCGCACTTGGCAGCGCATTTGAGGAAAGTATTC
GGGCTGGTCTTGACGAGATCACAGAGAACGTTTCATCTCTATATTGCACA
GTAACGGAGATAAAGAAAGCTCTTCCTTCGGATGATACCGGTTCATGCAA
CCAACCTAGTAGTGAGCTGACTTCCAAAGTTGACTCGCTTGAGACTAACC
TCAAGGCACTCAAGCGATTAATTGAATCCAACCTTCGAACGCAGTGGAGC
GCCGAAAGCATTGTGAAAGAACAAGTATCTCTCATTACAAAACATGTTTG
CGTGGCAATGCGACAGTATACCGCTCGTCGCATATCTGAGAACAATGCAC
TGATAGACAAAGCATTGCGTGCTCGTATTCCGGAGTACGCGAAGAATGAT
GACCAATTTGTACTGGTCCGCGAGGAAGACTTGGAGGGAAACGAATCTGT
CGGCATCCACAGGTCACAGCAAGACTCAAGTCAGACAGAATCTTAA
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protein sequence of Gvermi6946.t1

>Gvermi6946.t1 ID=Gvermi6946.t1|Name=Gvermi6946.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=482bp
MAGGRRPSSYVSGARHSSGIDRQHVQEALTSPPLASATGPSLPPWIPSIW
QPAPVQTPSQRVPREKHASVDPSSVLAAALDTAVQSAVERALGGAAGAAI
STSQLTASSSNSDNGTEDETSQPLSQRETELHDLVAALRTKLHQRDQDVS
SLQNRMDNLEKSLQQQEALSQTHIQHSKTFIRERLSETRWELDNNVQAYI
VPMKKKIEAAEKLVCSQKNYNQDVSHLYACSRLINSNFANFRSYVSGEFE
KYTAKMKHHEQSFKNISEKLASIVSDAASSNPDIEQVRRSVEAATESLAG
VRSKLKKIETQLGEVSKQAEDSIALGSAFEESIRAGLDEITENVSSLYCT
VTEIKKALPSDDTGSCNQPSSELTSKVDSLETNLKALKRLIESNLRTQWS
AESIVKEQVSLITKHVCVAMRQYTARRISENNALIDKALRARIPEYAKND
DQFVLVREEDLEGNESVGIHRSQQDSSQTES*
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mRNA from alignment at ScGOVlb_24229:714848..716293-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi6946.t1 ID=Gvermi6946.t1|Name=Gvermi6946.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1446bp|location=Sequence derived from alignment at ScGOVlb_24229:714848..716293- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCAGGCGGACGCCGTCCGTCCAGCTACGTCTCTGGTGCGCGACACAG
CTCTGGAATAGACCGCCAGCACGTGCAGGAAGCGCTCACGAGCCCGCCAC
TAGCCTCTGCTACGGGGCCTTCCTTACCGCCGTGGATTCCTTCCATATGG
CAGCCTGCTCCAGTTCAAACGCCCTCACAACGAGTGCCTAGGGAGAAGCA
CGCAAGTGTGGACCCTTCTTCCGTGCTTGCCGCCGCGCTTGACACTGCCG
TGCAGTCAGCTGTTGAACGTGCGTTGGGAGGCGCTGCTGGTGCTGCCATT
TCCACCTCGCAACTTACCGCCTCCTCTTCGAACTCAGATAACGGCACAGA
GGATGAAACATCGCAACCTCTCTCCCAACGCGAAACCGAGTTGCACGACC
TCGTCGCGGCGCTCAGGACCAAGTTGCATCAGCGCGATCAAGACGTTTCA
TCACTGCAAAACAGAATGGACAACCTAGAGAAATCTTTGCAGCAACAAGA
GGCCCTCTCGCAAACTCATATTCAGCATTCAAAAACCTTCATTCGCGAGC
GTCTTTCCGAAACCCGCTGGGAGTTGGACAACAACGTTCAGGCTTATATC
GTACCCATGAAGAAGAAAATAGAAGCAGCGGAGAAGCTAGTATGCTCGCA
AAAGAACTACAACCAGGATGTTTCTCATCTGTACGCGTGTTCCAGGCTAA
TCAACTCCAACTTTGCGAACTTTCGATCATATGTATCCGGTGAATTCGAA
AAATACACCGCGAAGATGAAACATCATGAGCAGTCTTTCAAAAACATTAG
TGAGAAACTAGCTTCGATTGTTTCTGATGCTGCCTCATCAAATCCGGACA
TCGAACAAGTGCGGCGAAGCGTAGAGGCTGCAACGGAGAGTTTGGCAGGT
GTTCGCTCTAAGCTGAAGAAGATTGAAACCCAGTTAGGAGAGGTGTCCAA
ACAGGCTGAAGATTCCATCGCACTTGGCAGCGCATTTGAGGAAAGTATTC
GGGCTGGTCTTGACGAGATCACAGAGAACGTTTCATCTCTATATTGCACA
GTAACGGAGATAAAGAAAGCTCTTCCTTCGGATGATACCGGTTCATGCAA
CCAACCTAGTAGTGAGCTGACTTCCAAAGTTGACTCGCTTGAGACTAACC
TCAAGGCACTCAAGCGATTAATTGAATCCAACCTTCGAACGCAGTGGAGC
GCCGAAAGCATTGTGAAAGAACAAGTATCTCTCATTACAAAACATGTTTG
CGTGGCAATGCGACAGTATACCGCTCGTCGCATATCTGAGAACAATGCAC
TGATAGACAAAGCATTGCGTGCTCGTATTCCGGAGTACGCGAAGAATGAT
GACCAATTTGTACTGGTCCGCGAGGAAGACTTGGAGGGAAACGAATCTGT
CGGCATCCACAGGTCACAGCAAGACTCAAGTCAGACAGAATCTTAA
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Coding sequence (CDS) from alignment at ScGOVlb_24229:714848..716293-

>Gvermi6946.t1 ID=Gvermi6946.t1|Name=Gvermi6946.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1446bp|location=Sequence derived from alignment at ScGOVlb_24229:714848..716293- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCAGGCGGACGCCGTCCGTCCAGCTACGTCTCTGGTGCGCGACACAG
CTCTGGAATAGACCGCCAGCACGTGCAGGAAGCGCTCACGAGCCCGCCAC
TAGCCTCTGCTACGGGGCCTTCCTTACCGCCGTGGATTCCTTCCATATGG
CAGCCTGCTCCAGTTCAAACGCCCTCACAACGAGTGCCTAGGGAGAAGCA
CGCAAGTGTGGACCCTTCTTCCGTGCTTGCCGCCGCGCTTGACACTGCCG
TGCAGTCAGCTGTTGAACGTGCGTTGGGAGGCGCTGCTGGTGCTGCCATT
TCCACCTCGCAACTTACCGCCTCCTCTTCGAACTCAGATAACGGCACAGA
GGATGAAACATCGCAACCTCTCTCCCAACGCGAAACCGAGTTGCACGACC
TCGTCGCGGCGCTCAGGACCAAGTTGCATCAGCGCGATCAAGACGTTTCA
TCACTGCAAAACAGAATGGACAACCTAGAGAAATCTTTGCAGCAACAAGA
GGCCCTCTCGCAAACTCATATTCAGCATTCAAAAACCTTCATTCGCGAGC
GTCTTTCCGAAACCCGCTGGGAGTTGGACAACAACGTTCAGGCTTATATC
GTACCCATGAAGAAGAAAATAGAAGCAGCGGAGAAGCTAGTATGCTCGCA
AAAGAACTACAACCAGGATGTTTCTCATCTGTACGCGTGTTCCAGGCTAA
TCAACTCCAACTTTGCGAACTTTCGATCATATGTATCCGGTGAATTCGAA
AAATACACCGCGAAGATGAAACATCATGAGCAGTCTTTCAAAAACATTAG
TGAGAAACTAGCTTCGATTGTTTCTGATGCTGCCTCATCAAATCCGGACA
TCGAACAAGTGCGGCGAAGCGTAGAGGCTGCAACGGAGAGTTTGGCAGGT
GTTCGCTCTAAGCTGAAGAAGATTGAAACCCAGTTAGGAGAGGTGTCCAA
ACAGGCTGAAGATTCCATCGCACTTGGCAGCGCATTTGAGGAAAGTATTC
GGGCTGGTCTTGACGAGATCACAGAGAACGTTTCATCTCTATATTGCACA
GTAACGGAGATAAAGAAAGCTCTTCCTTCGGATGATACCGGTTCATGCAA
CCAACCTAGTAGTGAGCTGACTTCCAAAGTTGACTCGCTTGAGACTAACC
TCAAGGCACTCAAGCGATTAATTGAATCCAACCTTCGAACGCAGTGGAGC
GCCGAAAGCATTGTGAAAGAACAAGTATCTCTCATTACAAAACATGTTTG
CGTGGCAATGCGACAGTATACCGCTCGTCGCATATCTGAGAACAATGCAC
TGATAGACAAAGCATTGCGTGCTCGTATTCCGGAGTACGCGAAGAATGAT
GACCAATTTGTACTGGTCCGCGAGGAAGACTTGGAGGGAAACGAATCTGT
CGGCATCCACAGGTCACAGCAAGACTCAAGTCAGACAGAATCTTAA
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