Gvermi6915.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi6915.t1
Unique NameGvermi6915.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length386
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24229contigScGOVlb_24229:454995..456390 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi6915Gvermi6915Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_24229 454995..456390 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6915.t1Gvermi6915.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_24229 454995..456390 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6915.t1.stop1Gvermi6915.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_24229 454995..454997 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6915.t1.CDS1Gvermi6915.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24229 454995..455178 -
Gvermi6915.t1.CDS2Gvermi6915.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24229 455417..456390 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6915.t1.exon1Gvermi6915.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24229 454995..455178 -
Gvermi6915.t1.exon2Gvermi6915.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24229 455417..456390 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6915.t1.intron1Gvermi6915.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_24229 455179..455416 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6915.t1.start1Gvermi6915.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_24229 456388..456390 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi6915.t1 ID=Gvermi6915.t1|Name=Gvermi6915.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=386bp
MGALFHPSDNDVLDLNPLSPLPPKDPTLSFLKSYLTYRTRPPFRPSATTP
YTQYDSFLFTQLTSQLAQLSPENILDLICLFPPSALQIYTPKILHSVTPL
LSRVVRSLHNRLRNNDLHFVADSLHLLSCIASSNDASRVAVIDALSTRSQ
RADAADKVQAWLRELSNKSEGELFPNGLTQRQMCVGLASQLLDALLSLPQ
FERVGYVRLKSSDTRVEATIARVADVPVSLSREALQKFGGADAAVAALLD
GWRPQIGKRAKKDDRPKGAVDTHQVQRRLARDDAKRQAEEERDAARRLEE
LILPNDGDNEGAGGSMNRASDNEDRLRCKNIRKRMEVLVVTVEEGAVVVE
GVDEVEDEVEDEVEAPIMGERRERLESKVCKTGEQ*
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spliced messenger RNA

>Gvermi6915.t1 ID=Gvermi6915.t1|Name=Gvermi6915.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1158bp|location=Sequence derived from alignment at ScGOVlb_24229:454995..456390- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGTGCACTCTTTCACCCTTCCGACAATGATGTCTTAGATCTGAACCC
ACTTTCTCCTCTGCCACCAAAAGACCCCACTCTTTCATTCCTCAAGTCGT
ACCTAACTTATCGAACACGTCCTCCATTTCGACCATCTGCAACTACACCG
TACACGCAGTATGATTCTTTCCTTTTCACTCAGCTAACTTCGCAACTTGC
CCAGCTTTCACCCGAGAACATTCTTGACCTCATATGTCTCTTTCCGCCAT
CCGCATTGCAAATCTACACTCCCAAAATACTCCATTCAGTCACGCCCTTA
CTCAGTCGCGTCGTTCGATCCCTTCATAACCGTTTGCGAAACAACGATTT
GCATTTTGTTGCTGATAGTCTTCACTTGCTCTCGTGTATTGCTTCATCAA
ACGACGCTAGTCGCGTCGCCGTAATTGACGCATTGTCCACCCGTTCGCAA
CGGGCCGATGCAGCGGATAAAGTGCAAGCCTGGTTGCGGGAGTTGTCAAA
CAAGTCCGAGGGCGAGTTATTCCCCAACGGCTTGACGCAGCGACAAATGT
GTGTCGGACTAGCATCGCAGCTGCTCGACGCTCTGCTTTCCCTTCCGCAG
TTTGAGCGAGTAGGCTACGTGCGTTTGAAGTCTTCAGATACTCGTGTTGA
AGCGACTATCGCCCGTGTCGCAGATGTGCCTGTTTCTTTGTCTCGTGAGG
CGCTGCAAAAGTTCGGTGGCGCGGATGCCGCCGTTGCGGCATTGTTGGAT
GGTTGGCGACCGCAAATCGGTAAGCGCGCCAAAAAAGATGACAGGCCGAA
GGGAGCTGTGGATACGCATCAAGTGCAAAGGCGTCTTGCGAGAGATGACG
CGAAAAGGCAGGCTGAGGAAGAAAGAGACGCTGCCAGACGTCTCGAAGAG
CTCATTTTGCCAAACGATGGAGATAATGAGGGTGCTGGGGGTTCGATGAA
TCGTGCTTCGGACAATGAAGATCGGTTGAGATGCAAGAACATTCGCAAGC
GAATGGAAGTTCTAGTCGTGACAGTGGAAGAGGGCGCGGTCGTGGTAGAG
GGCGTGGACGAGGTCGAGGACGAGGTCGAGGACGAGGTCGAGGCGCCAAT
CATGGGCGAAAGACGCGAGCGGTTAGAAAGCAAGGTGTGTAAGACTGGAG
AACAATAG
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protein sequence of Gvermi6915.t1

>Gvermi6915.t1 ID=Gvermi6915.t1|Name=Gvermi6915.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=386bp
MGALFHPSDNDVLDLNPLSPLPPKDPTLSFLKSYLTYRTRPPFRPSATTP
YTQYDSFLFTQLTSQLAQLSPENILDLICLFPPSALQIYTPKILHSVTPL
LSRVVRSLHNRLRNNDLHFVADSLHLLSCIASSNDASRVAVIDALSTRSQ
RADAADKVQAWLRELSNKSEGELFPNGLTQRQMCVGLASQLLDALLSLPQ
FERVGYVRLKSSDTRVEATIARVADVPVSLSREALQKFGGADAAVAALLD
GWRPQIGKRAKKDDRPKGAVDTHQVQRRLARDDAKRQAEEERDAARRLEE
LILPNDGDNEGAGGSMNRASDNEDRLRCKNIRKRMEVLVVTVEEGAVVVE
GVDEVEDEVEDEVEAPIMGERRERLESKVCKTGEQ*
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mRNA from alignment at ScGOVlb_24229:454995..456390-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi6915.t1 ID=Gvermi6915.t1|Name=Gvermi6915.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1396bp|location=Sequence derived from alignment at ScGOVlb_24229:454995..456390- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGGTGCACTCTTTCACCCTTCCGACAATGATGTCTTAGATCTGAACCC
ACTTTCTCCTCTGCCACCAAAAGACCCCACTCTTTCATTCCTCAAGTCGT
ACCTAACTTATCGAACACGTCCTCCATTTCGACCATCTGCAACTACACCG
TACACGCAGTATGATTCTTTCCTTTTCACTCAGCTAACTTCGCAACTTGC
CCAGCTTTCACCCGAGAACATTCTTGACCTCATATGTCTCTTTCCGCCAT
CCGCATTGCAAATCTACACTCCCAAAATACTCCATTCAGTCACGCCCTTA
CTCAGTCGCGTCGTTCGATCCCTTCATAACCGTTTGCGAAACAACGATTT
GCATTTTGTTGCTGATAGTCTTCACTTGCTCTCGTGTATTGCTTCATCAA
ACGACGCTAGTCGCGTCGCCGTAATTGACGCATTGTCCACCCGTTCGCAA
CGGGCCGATGCAGCGGATAAAGTGCAAGCCTGGTTGCGGGAGTTGTCAAA
CAAGTCCGAGGGCGAGTTATTCCCCAACGGCTTGACGCAGCGACAAATGT
GTGTCGGACTAGCATCGCAGCTGCTCGACGCTCTGCTTTCCCTTCCGCAG
TTTGAGCGAGTAGGCTACGTGCGTTTGAAGTCTTCAGATACTCGTGTTGA
AGCGACTATCGCCCGTGTCGCAGATGTGCCTGTTTCTTTGTCTCGTGAGG
CGCTGCAAAAGTTCGGTGGCGCGGATGCCGCCGTTGCGGCATTGTTGGAT
GGTTGGCGACCGCAAATCGGTAAGCGCGCCAAAAAAGATGACAGGCCGAA
GGGAGCTGTGGATACGCATCAAGTGCAAAGGCGTCTTGCGAGAGATGACG
CGAAAAGGCAGGCTGAGGAAGAAAGAGACGCTGCCAGACGTCTCGAAGAG
CTCATTTTGCCAAACGATGGAGATAATGAGGGTGCTGGGGGTTCGATGAA
TCGTGCTTCGGACAATGAAGATCGGTACGTGGGAGCAGACGACGACGCGC
CGCTTGAAGGGGGGGTTTCTCACTATCTGGCGCGCGATGAATCTCTTGAT
GTTGATTATCCGCCAGTCTCAGACGGTAACGGCCGAGGGGCTTCAAGCAA
GAGTGCATCATCAGGCACGGCGGAAGCGGTGCGGCGGACAGTTATACGAG
ATGAGGGGAAGAGAAATCGGAGCCAACAGAATGTTAGACCGGATCAACAA
AGAAAAACTCAGGTTGAGATGCAAGAACATTCGCAAGCGAATGGAAGTTC
TAGTCGTGACAGTGGAAGAGGGCGCGGTCGTGGTAGAGGGCGTGGACGAG
GTCGAGGACGAGGTCGAGGACGAGGTCGAGGCGCCAATCATGGGCGAAAG
ACGCGAGCGGTTAGAAAGCAAGGTGTGTAAGACTGGAGAACAATAG
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Coding sequence (CDS) from alignment at ScGOVlb_24229:454995..456390-

>Gvermi6915.t1 ID=Gvermi6915.t1|Name=Gvermi6915.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1158bp|location=Sequence derived from alignment at ScGOVlb_24229:454995..456390- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGGTGCACTCTTTCACCCTTCCGACAATGATGTCTTAGATCTGAACCC
ACTTTCTCCTCTGCCACCAAAAGACCCCACTCTTTCATTCCTCAAGTCGT
ACCTAACTTATCGAACACGTCCTCCATTTCGACCATCTGCAACTACACCG
TACACGCAGTATGATTCTTTCCTTTTCACTCAGCTAACTTCGCAACTTGC
CCAGCTTTCACCCGAGAACATTCTTGACCTCATATGTCTCTTTCCGCCAT
CCGCATTGCAAATCTACACTCCCAAAATACTCCATTCAGTCACGCCCTTA
CTCAGTCGCGTCGTTCGATCCCTTCATAACCGTTTGCGAAACAACGATTT
GCATTTTGTTGCTGATAGTCTTCACTTGCTCTCGTGTATTGCTTCATCAA
ACGACGCTAGTCGCGTCGCCGTAATTGACGCATTGTCCACCCGTTCGCAA
CGGGCCGATGCAGCGGATAAAGTGCAAGCCTGGTTGCGGGAGTTGTCAAA
CAAGTCCGAGGGCGAGTTATTCCCCAACGGCTTGACGCAGCGACAAATGT
GTGTCGGACTAGCATCGCAGCTGCTCGACGCTCTGCTTTCCCTTCCGCAG
TTTGAGCGAGTAGGCTACGTGCGTTTGAAGTCTTCAGATACTCGTGTTGA
AGCGACTATCGCCCGTGTCGCAGATGTGCCTGTTTCTTTGTCTCGTGAGG
CGCTGCAAAAGTTCGGTGGCGCGGATGCCGCCGTTGCGGCATTGTTGGAT
GGTTGGCGACCGCAAATCGGTAAGCGCGCCAAAAAAGATGACAGGCCGAA
GGGAGCTGTGGATACGCATCAAGTGCAAAGGCGTCTTGCGAGAGATGACG
CGAAAAGGCAGGCTGAGGAAGAAAGAGACGCTGCCAGACGTCTCGAAGAG
CTCATTTTGCCAAACGATGGAGATAATGAGGGTGCTGGGGGTTCGATGAA
TCGTGCTTCGGACAATGAAGATCGGTTGAGATGCAAGAACATTCGCAAGC
GAATGGAAGTTCTAGTCGTGACAGTGGAAGAGGGCGCGGTCGTGGTAGAG
GGCGTGGACGAGGTCGAGGACGAGGTCGAGGACGAGGTCGAGGCGCCAAT
CATGGGCGAAAGACGCGAGCGGTTAGAAAGCAAGGTGTGTAAGACTGGAG
AACAATAG
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