Gvermi6912.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi6912.t1
Unique NameGvermi6912.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length218
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24229contigScGOVlb_24229:448566..449219 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005707594.1
Max annot lvl2759|Eukaryota
Evalue1.56e-24
EggNOG OGs2C0DF@1|root,2S6WY@2759|Eukaryota
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi6912Gvermi6912Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_24229 448566..449219 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6912.t1.stop1Gvermi6912.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_24229 448566..448568 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6912.t1.CDS1Gvermi6912.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24229 448566..449219 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6912.t1.exon1Gvermi6912.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24229 448566..449219 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6912.t1.start1Gvermi6912.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_24229 449217..449219 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6912.t1Gvermi6912.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_24229 448566..449219 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi6912.t1 ID=Gvermi6912.t1|Name=Gvermi6912.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=218bp
MAFITTPFLSQSRCSHPNVVTCSSTPPPSSGSYSRRQLLSGAAAAAAAIL
ASALPAPASAKNGTGLERAFSKVLFPKEGFNAPDTLQPSENIVDKSVLDS
KEAQEALKKLKEYESQISDLYSKFKQDPQLELTSAVRKLVNISDLRNALN
VVNEAIDEQSQGETDKIVRGIIQDIGELEVAATIKKGAQRTTKRIERTTD
WFDKISGDFTKLLSFYS*
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spliced messenger RNA

>Gvermi6912.t1 ID=Gvermi6912.t1|Name=Gvermi6912.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=654bp|location=Sequence derived from alignment at ScGOVlb_24229:448566..449219- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCTTCATCACGACCCCATTCCTCTCACAATCGCGTTGCTCCCATCC
TAACGTCGTAACTTGCAGCTCTACCCCACCCCCATCGTCCGGCAGCTACT
CTCGCCGCCAGCTTCTCTCTGGCGCTGCGGCCGCCGCAGCTGCAATCTTA
GCCTCCGCCCTTCCCGCTCCCGCCTCTGCCAAGAATGGCACTGGTCTTGA
GCGCGCCTTCAGCAAGGTTCTTTTCCCAAAAGAAGGTTTCAATGCCCCCG
ACACTCTGCAACCGTCAGAGAACATTGTTGACAAGTCCGTCCTCGACTCT
AAAGAAGCCCAAGAGGCTCTGAAGAAGTTGAAGGAATACGAAAGCCAGAT
AAGCGACTTGTACTCGAAGTTCAAGCAAGACCCACAACTCGAATTAACGT
CCGCCGTGAGGAAGCTGGTCAACATATCAGATTTACGAAATGCTCTCAAT
GTCGTGAACGAAGCCATTGATGAACAATCACAAGGTGAAACGGATAAAAT
TGTGCGCGGTATCATTCAAGACATTGGTGAATTGGAGGTTGCTGCAACGA
TTAAAAAAGGTGCGCAGAGAACAACGAAGCGAATCGAACGTACTACCGAC
TGGTTCGACAAGATCTCCGGAGACTTTACGAAACTCCTCTCGTTCTACTC
GTAA
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protein sequence of Gvermi6912.t1

>Gvermi6912.t1 ID=Gvermi6912.t1|Name=Gvermi6912.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=218bp
MAFITTPFLSQSRCSHPNVVTCSSTPPPSSGSYSRRQLLSGAAAAAAAIL
ASALPAPASAKNGTGLERAFSKVLFPKEGFNAPDTLQPSENIVDKSVLDS
KEAQEALKKLKEYESQISDLYSKFKQDPQLELTSAVRKLVNISDLRNALN
VVNEAIDEQSQGETDKIVRGIIQDIGELEVAATIKKGAQRTTKRIERTTD
WFDKISGDFTKLLSFYS*
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mRNA from alignment at ScGOVlb_24229:448566..449219-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi6912.t1 ID=Gvermi6912.t1|Name=Gvermi6912.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=654bp|location=Sequence derived from alignment at ScGOVlb_24229:448566..449219- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCCTTCATCACGACCCCATTCCTCTCACAATCGCGTTGCTCCCATCC
TAACGTCGTAACTTGCAGCTCTACCCCACCCCCATCGTCCGGCAGCTACT
CTCGCCGCCAGCTTCTCTCTGGCGCTGCGGCCGCCGCAGCTGCAATCTTA
GCCTCCGCCCTTCCCGCTCCCGCCTCTGCCAAGAATGGCACTGGTCTTGA
GCGCGCCTTCAGCAAGGTTCTTTTCCCAAAAGAAGGTTTCAATGCCCCCG
ACACTCTGCAACCGTCAGAGAACATTGTTGACAAGTCCGTCCTCGACTCT
AAAGAAGCCCAAGAGGCTCTGAAGAAGTTGAAGGAATACGAAAGCCAGAT
AAGCGACTTGTACTCGAAGTTCAAGCAAGACCCACAACTCGAATTAACGT
CCGCCGTGAGGAAGCTGGTCAACATATCAGATTTACGAAATGCTCTCAAT
GTCGTGAACGAAGCCATTGATGAACAATCACAAGGTGAAACGGATAAAAT
TGTGCGCGGTATCATTCAAGACATTGGTGAATTGGAGGTTGCTGCAACGA
TTAAAAAAGGTGCGCAGAGAACAACGAAGCGAATCGAACGTACTACCGAC
TGGTTCGACAAGATCTCCGGAGACTTTACGAAACTCCTCTCGTTCTACTC
GTAA
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Coding sequence (CDS) from alignment at ScGOVlb_24229:448566..449219-

>Gvermi6912.t1 ID=Gvermi6912.t1|Name=Gvermi6912.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=654bp|location=Sequence derived from alignment at ScGOVlb_24229:448566..449219- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCCTTCATCACGACCCCATTCCTCTCACAATCGCGTTGCTCCCATCC
TAACGTCGTAACTTGCAGCTCTACCCCACCCCCATCGTCCGGCAGCTACT
CTCGCCGCCAGCTTCTCTCTGGCGCTGCGGCCGCCGCAGCTGCAATCTTA
GCCTCCGCCCTTCCCGCTCCCGCCTCTGCCAAGAATGGCACTGGTCTTGA
GCGCGCCTTCAGCAAGGTTCTTTTCCCAAAAGAAGGTTTCAATGCCCCCG
ACACTCTGCAACCGTCAGAGAACATTGTTGACAAGTCCGTCCTCGACTCT
AAAGAAGCCCAAGAGGCTCTGAAGAAGTTGAAGGAATACGAAAGCCAGAT
AAGCGACTTGTACTCGAAGTTCAAGCAAGACCCACAACTCGAATTAACGT
CCGCCGTGAGGAAGCTGGTCAACATATCAGATTTACGAAATGCTCTCAAT
GTCGTGAACGAAGCCATTGATGAACAATCACAAGGTGAAACGGATAAAAT
TGTGCGCGGTATCATTCAAGACATTGGTGAATTGGAGGTTGCTGCAACGA
TTAAAAAAGGTGCGCAGAGAACAACGAAGCGAATCGAACGTACTACCGAC
TGGTTCGACAAGATCTCCGGAGACTTTACGAAACTCCTCTCGTTCTACTC
GTAA
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