Gvermi6909.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi6909.t1
Unique NameGvermi6909.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length336
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24229contigScGOVlb_24229:418764..419771 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog2850.Phatr48253
PFAMsBACK,BTB,Kelch_1,Kelch_4,Kelch_6
Max annot lvl2759|Eukaryota
KEGG koko:K10442,ko:K20285,ko:K21912
Evalue1.37e-74
EggNOG OGsKOG4441@1|root,KOG4441@2759|Eukaryota
Descriptionprotein ubiquitination
COG categoryKLT
BRITEko00000,ko04121,ko04131
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi6909Gvermi6909Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_24229 418764..419771 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6909.t1.start1Gvermi6909.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_24229 418764..418766 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6909.t1.CDS1Gvermi6909.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24229 418764..419771 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6909.t1.exon1Gvermi6909.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24229 418764..419771 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6909.t1.stop1Gvermi6909.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_24229 419769..419771 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6909.t1Gvermi6909.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_24229 418764..419771 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi6909.t1 ID=Gvermi6909.t1|Name=Gvermi6909.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=336bp
MLRLCALLTLFGYASFGLGNAVWQTLNTKGTPAPRHEACFVMVKGKAYLV
GGRGSKPVDVFNPATNTWTKGAAPPIQLHHMQCVAYGNEVWIPSAWTGGY
PFEQNVDKIYIYNTVTNSWYTRPGLPPHRRRGGAAAVLHNMKMYVIGGNR
GGHGKHATSLGWVDYYDLRANKWVLNLPNLPDARDHVGGALVRGNKICVA
GGRDGGVGNFFTATKAATFCFNLNGSGGGRWQNMNAPIPAPRAGAAYGTN
CFGHLVIAGGERNDAFDRVDVFDGWLWRTTAKLNRKRHGTGLAVSKCACG
KIFIASGSGGKGGGPELKTTEVYLPNGDTRPCASH*
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spliced messenger RNA

>Gvermi6909.t1 ID=Gvermi6909.t1|Name=Gvermi6909.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1008bp|location=Sequence derived from alignment at ScGOVlb_24229:418764..419771+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTGCGCCTGTGCGCCCTTCTCACGCTGTTCGGCTATGCATCGTTCGG
TCTTGGCAACGCTGTTTGGCAAACTCTAAACACCAAAGGCACGCCTGCTC
CCAGGCACGAGGCCTGTTTCGTCATGGTCAAAGGCAAAGCATATCTTGTC
GGCGGCCGCGGCTCCAAGCCGGTCGACGTGTTCAACCCCGCCACCAACAC
ATGGACCAAAGGCGCCGCCCCGCCTATACAGTTGCACCACATGCAATGTG
TGGCGTACGGCAACGAAGTTTGGATTCCATCCGCGTGGACCGGCGGCTAT
CCGTTTGAACAAAACGTCGACAAAATATACATCTACAACACCGTGACCAA
CTCGTGGTACACCAGACCGGGCCTCCCACCGCACCGTCGGCGCGGCGGCG
CCGCCGCCGTGCTACACAACATGAAAATGTACGTCATCGGCGGCAACCGC
GGTGGCCACGGCAAGCACGCAACTTCGCTCGGATGGGTCGACTACTACGA
CCTTCGCGCCAACAAGTGGGTGCTCAACCTGCCCAACCTGCCGGACGCCC
GCGACCACGTCGGCGGCGCCCTCGTGAGGGGGAACAAAATCTGCGTAGCC
GGCGGAAGAGACGGAGGCGTGGGCAACTTCTTCACCGCCACCAAGGCGGC
TACGTTTTGTTTCAACCTCAACGGCAGCGGCGGCGGCCGGTGGCAGAACA
TGAACGCGCCGATTCCAGCTCCGCGCGCCGGCGCCGCGTACGGCACCAAT
TGCTTTGGACACCTGGTGATTGCCGGCGGGGAGCGCAACGACGCCTTTGA
TCGCGTCGATGTTTTTGATGGGTGGCTGTGGAGAACCACCGCCAAGCTGA
ACAGAAAACGACACGGCACGGGACTGGCCGTGTCCAAATGCGCGTGTGGA
AAGATTTTCATCGCGTCTGGTAGCGGCGGTAAAGGTGGCGGTCCGGAACT
GAAGACGACTGAAGTGTATCTTCCTAACGGAGACACTAGGCCTTGCGCAT
CTCACTAG
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protein sequence of Gvermi6909.t1

>Gvermi6909.t1 ID=Gvermi6909.t1|Name=Gvermi6909.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=336bp
MLRLCALLTLFGYASFGLGNAVWQTLNTKGTPAPRHEACFVMVKGKAYLV
GGRGSKPVDVFNPATNTWTKGAAPPIQLHHMQCVAYGNEVWIPSAWTGGY
PFEQNVDKIYIYNTVTNSWYTRPGLPPHRRRGGAAAVLHNMKMYVIGGNR
GGHGKHATSLGWVDYYDLRANKWVLNLPNLPDARDHVGGALVRGNKICVA
GGRDGGVGNFFTATKAATFCFNLNGSGGGRWQNMNAPIPAPRAGAAYGTN
CFGHLVIAGGERNDAFDRVDVFDGWLWRTTAKLNRKRHGTGLAVSKCACG
KIFIASGSGGKGGGPELKTTEVYLPNGDTRPCASH*
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mRNA from alignment at ScGOVlb_24229:418764..419771+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi6909.t1 ID=Gvermi6909.t1|Name=Gvermi6909.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1008bp|location=Sequence derived from alignment at ScGOVlb_24229:418764..419771+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCTGCGCCTGTGCGCCCTTCTCACGCTGTTCGGCTATGCATCGTTCGG
TCTTGGCAACGCTGTTTGGCAAACTCTAAACACCAAAGGCACGCCTGCTC
CCAGGCACGAGGCCTGTTTCGTCATGGTCAAAGGCAAAGCATATCTTGTC
GGCGGCCGCGGCTCCAAGCCGGTCGACGTGTTCAACCCCGCCACCAACAC
ATGGACCAAAGGCGCCGCCCCGCCTATACAGTTGCACCACATGCAATGTG
TGGCGTACGGCAACGAAGTTTGGATTCCATCCGCGTGGACCGGCGGCTAT
CCGTTTGAACAAAACGTCGACAAAATATACATCTACAACACCGTGACCAA
CTCGTGGTACACCAGACCGGGCCTCCCACCGCACCGTCGGCGCGGCGGCG
CCGCCGCCGTGCTACACAACATGAAAATGTACGTCATCGGCGGCAACCGC
GGTGGCCACGGCAAGCACGCAACTTCGCTCGGATGGGTCGACTACTACGA
CCTTCGCGCCAACAAGTGGGTGCTCAACCTGCCCAACCTGCCGGACGCCC
GCGACCACGTCGGCGGCGCCCTCGTGAGGGGGAACAAAATCTGCGTAGCC
GGCGGAAGAGACGGAGGCGTGGGCAACTTCTTCACCGCCACCAAGGCGGC
TACGTTTTGTTTCAACCTCAACGGCAGCGGCGGCGGCCGGTGGCAGAACA
TGAACGCGCCGATTCCAGCTCCGCGCGCCGGCGCCGCGTACGGCACCAAT
TGCTTTGGACACCTGGTGATTGCCGGCGGGGAGCGCAACGACGCCTTTGA
TCGCGTCGATGTTTTTGATGGGTGGCTGTGGAGAACCACCGCCAAGCTGA
ACAGAAAACGACACGGCACGGGACTGGCCGTGTCCAAATGCGCGTGTGGA
AAGATTTTCATCGCGTCTGGTAGCGGCGGTAAAGGTGGCGGTCCGGAACT
GAAGACGACTGAAGTGTATCTTCCTAACGGAGACACTAGGCCTTGCGCAT
CTCACTAG
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Coding sequence (CDS) from alignment at ScGOVlb_24229:418764..419771+

>Gvermi6909.t1 ID=Gvermi6909.t1|Name=Gvermi6909.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1008bp|location=Sequence derived from alignment at ScGOVlb_24229:418764..419771+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCTGCGCCTGTGCGCCCTTCTCACGCTGTTCGGCTATGCATCGTTCGG
TCTTGGCAACGCTGTTTGGCAAACTCTAAACACCAAAGGCACGCCTGCTC
CCAGGCACGAGGCCTGTTTCGTCATGGTCAAAGGCAAAGCATATCTTGTC
GGCGGCCGCGGCTCCAAGCCGGTCGACGTGTTCAACCCCGCCACCAACAC
ATGGACCAAAGGCGCCGCCCCGCCTATACAGTTGCACCACATGCAATGTG
TGGCGTACGGCAACGAAGTTTGGATTCCATCCGCGTGGACCGGCGGCTAT
CCGTTTGAACAAAACGTCGACAAAATATACATCTACAACACCGTGACCAA
CTCGTGGTACACCAGACCGGGCCTCCCACCGCACCGTCGGCGCGGCGGCG
CCGCCGCCGTGCTACACAACATGAAAATGTACGTCATCGGCGGCAACCGC
GGTGGCCACGGCAAGCACGCAACTTCGCTCGGATGGGTCGACTACTACGA
CCTTCGCGCCAACAAGTGGGTGCTCAACCTGCCCAACCTGCCGGACGCCC
GCGACCACGTCGGCGGCGCCCTCGTGAGGGGGAACAAAATCTGCGTAGCC
GGCGGAAGAGACGGAGGCGTGGGCAACTTCTTCACCGCCACCAAGGCGGC
TACGTTTTGTTTCAACCTCAACGGCAGCGGCGGCGGCCGGTGGCAGAACA
TGAACGCGCCGATTCCAGCTCCGCGCGCCGGCGCCGCGTACGGCACCAAT
TGCTTTGGACACCTGGTGATTGCCGGCGGGGAGCGCAACGACGCCTTTGA
TCGCGTCGATGTTTTTGATGGGTGGCTGTGGAGAACCACCGCCAAGCTGA
ACAGAAAACGACACGGCACGGGACTGGCCGTGTCCAAATGCGCGTGTGGA
AAGATTTTCATCGCGTCTGGTAGCGGCGGTAAAGGTGGCGGTCCGGAACT
GAAGACGACTGAAGTGTATCTTCCTAACGGAGACACTAGGCCTTGCGCAT
CTCACTAG
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