Gvermi6908.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi6908.t1
Unique NameGvermi6908.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length253
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24229contigScGOVlb_24229:415769..416527 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog2850.Phatr48253
PFAMsBACK,BTB,Kelch_1,Kelch_4,Kelch_6
Max annot lvl2759|Eukaryota
KEGG koko:K10442,ko:K20285,ko:K21912
Evalue8.15e-61
EggNOG OGsKOG4441@1|root,KOG4441@2759|Eukaryota
Descriptionprotein ubiquitination
COG categoryKLT
BRITEko00000,ko04121,ko04131
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi6908Gvermi6908Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_24229 415769..416527 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6908.t1.stop1Gvermi6908.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_24229 415769..415771 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6908.t1.CDS1Gvermi6908.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24229 415769..416527 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6908.t1.exon1Gvermi6908.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24229 415769..416527 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6908.t1.start1Gvermi6908.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_24229 416525..416527 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6908.t1Gvermi6908.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_24229 415769..416527 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi6908.t1 ID=Gvermi6908.t1|Name=Gvermi6908.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=253bp
MQCVAYKNKIYIVSSWTRGFPFEANVDKIYIYDIASNSWSTRPGLPEGRR
RGGSASVLYDDKIYVVGGNDGGHGAHATTLGMMDYYDLLSERWVTNLPEL
PEARDHVGGAIVNGNKLCIAGGRDGGVADFFTATIGSTFCYSFASGAWQN
MNARIPAERAGACYGTTCQGHMMVAGGERTDAFSQVDVFDGTSWTTAASL
QQKRHGSGLGVSDCSCGQIFIASGSGRKGGSPELSSTEVYLPAGVDGTCA
TY*
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spliced messenger RNA

>Gvermi6908.t1 ID=Gvermi6908.t1|Name=Gvermi6908.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=759bp|location=Sequence derived from alignment at ScGOVlb_24229:415769..416527- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAGTGCGTGGCGTACAAAAACAAGATCTACATCGTATCGTCGTGGAC
CAGGGGCTTTCCGTTTGAGGCCAACGTGGACAAGATTTACATCTACGACA
TCGCGTCCAATTCGTGGTCCACCAGGCCGGGGCTGCCGGAGGGCAGACGG
CGCGGCGGCTCCGCCTCTGTGCTGTACGACGACAAGATCTACGTGGTGGG
CGGCAACGACGGCGGCCACGGGGCGCACGCCACGACGCTCGGCATGATGG
ACTACTACGACCTGCTGAGCGAGCGGTGGGTGACCAACCTGCCCGAGCTG
CCGGAGGCGCGCGACCACGTCGGGGGCGCCATCGTGAACGGCAACAAACT
GTGCATTGCGGGCGGCAGGGACGGCGGCGTGGCCGACTTCTTCACGGCCA
CCATCGGCAGCACGTTCTGCTACTCGTTCGCGTCGGGCGCGTGGCAGAAC
ATGAACGCGCGCATCCCCGCGGAGCGCGCCGGGGCGTGCTACGGCACCAC
GTGCCAGGGGCACATGATGGTGGCCGGCGGCGAGCGCACGGATGCGTTCT
CGCAGGTGGACGTGTTTGACGGCACGTCGTGGACGACGGCGGCCAGCCTG
CAGCAGAAGAGGCACGGGTCCGGGCTGGGGGTGAGCGACTGCTCGTGCGG
GCAGATCTTCATTGCGTCGGGGAGCGGGAGGAAGGGGGGCTCGCCGGAGC
TTTCTTCCACGGAGGTGTACCTGCCCGCCGGCGTGGACGGCACGTGCGCG
ACTTACTAG
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protein sequence of Gvermi6908.t1

>Gvermi6908.t1 ID=Gvermi6908.t1|Name=Gvermi6908.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=253bp
MQCVAYKNKIYIVSSWTRGFPFEANVDKIYIYDIASNSWSTRPGLPEGRR
RGGSASVLYDDKIYVVGGNDGGHGAHATTLGMMDYYDLLSERWVTNLPEL
PEARDHVGGAIVNGNKLCIAGGRDGGVADFFTATIGSTFCYSFASGAWQN
MNARIPAERAGACYGTTCQGHMMVAGGERTDAFSQVDVFDGTSWTTAASL
QQKRHGSGLGVSDCSCGQIFIASGSGRKGGSPELSSTEVYLPAGVDGTCA
TY*
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mRNA from alignment at ScGOVlb_24229:415769..416527-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi6908.t1 ID=Gvermi6908.t1|Name=Gvermi6908.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=759bp|location=Sequence derived from alignment at ScGOVlb_24229:415769..416527- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCAGTGCGTGGCGTACAAAAACAAGATCTACATCGTATCGTCGTGGAC
CAGGGGCTTTCCGTTTGAGGCCAACGTGGACAAGATTTACATCTACGACA
TCGCGTCCAATTCGTGGTCCACCAGGCCGGGGCTGCCGGAGGGCAGACGG
CGCGGCGGCTCCGCCTCTGTGCTGTACGACGACAAGATCTACGTGGTGGG
CGGCAACGACGGCGGCCACGGGGCGCACGCCACGACGCTCGGCATGATGG
ACTACTACGACCTGCTGAGCGAGCGGTGGGTGACCAACCTGCCCGAGCTG
CCGGAGGCGCGCGACCACGTCGGGGGCGCCATCGTGAACGGCAACAAACT
GTGCATTGCGGGCGGCAGGGACGGCGGCGTGGCCGACTTCTTCACGGCCA
CCATCGGCAGCACGTTCTGCTACTCGTTCGCGTCGGGCGCGTGGCAGAAC
ATGAACGCGCGCATCCCCGCGGAGCGCGCCGGGGCGTGCTACGGCACCAC
GTGCCAGGGGCACATGATGGTGGCCGGCGGCGAGCGCACGGATGCGTTCT
CGCAGGTGGACGTGTTTGACGGCACGTCGTGGACGACGGCGGCCAGCCTG
CAGCAGAAGAGGCACGGGTCCGGGCTGGGGGTGAGCGACTGCTCGTGCGG
GCAGATCTTCATTGCGTCGGGGAGCGGGAGGAAGGGGGGCTCGCCGGAGC
TTTCTTCCACGGAGGTGTACCTGCCCGCCGGCGTGGACGGCACGTGCGCG
ACTTACTAG
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Coding sequence (CDS) from alignment at ScGOVlb_24229:415769..416527-

>Gvermi6908.t1 ID=Gvermi6908.t1|Name=Gvermi6908.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=759bp|location=Sequence derived from alignment at ScGOVlb_24229:415769..416527- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCAGTGCGTGGCGTACAAAAACAAGATCTACATCGTATCGTCGTGGAC
CAGGGGCTTTCCGTTTGAGGCCAACGTGGACAAGATTTACATCTACGACA
TCGCGTCCAATTCGTGGTCCACCAGGCCGGGGCTGCCGGAGGGCAGACGG
CGCGGCGGCTCCGCCTCTGTGCTGTACGACGACAAGATCTACGTGGTGGG
CGGCAACGACGGCGGCCACGGGGCGCACGCCACGACGCTCGGCATGATGG
ACTACTACGACCTGCTGAGCGAGCGGTGGGTGACCAACCTGCCCGAGCTG
CCGGAGGCGCGCGACCACGTCGGGGGCGCCATCGTGAACGGCAACAAACT
GTGCATTGCGGGCGGCAGGGACGGCGGCGTGGCCGACTTCTTCACGGCCA
CCATCGGCAGCACGTTCTGCTACTCGTTCGCGTCGGGCGCGTGGCAGAAC
ATGAACGCGCGCATCCCCGCGGAGCGCGCCGGGGCGTGCTACGGCACCAC
GTGCCAGGGGCACATGATGGTGGCCGGCGGCGAGCGCACGGATGCGTTCT
CGCAGGTGGACGTGTTTGACGGCACGTCGTGGACGACGGCGGCCAGCCTG
CAGCAGAAGAGGCACGGGTCCGGGCTGGGGGTGAGCGACTGCTCGTGCGG
GCAGATCTTCATTGCGTCGGGGAGCGGGAGGAAGGGGGGCTCGCCGGAGC
TTTCTTCCACGGAGGTGTACCTGCCCGCCGGCGTGGACGGCACGTGCGCG
ACTTACTAG
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