Gvermi6907.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi6907.t1
Unique Name	Gvermi6907.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	545

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_24229	contig	ScGOVlb_24229:411456..413090 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	2850.Phatr48253
PFAMs	BACK,BTB,Kelch_1,Kelch_4,Kelch_6
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K10442,ko:K20285,ko:K21912
Evalue	3.31e-67
EggNOG OGs	KOG4441@1\|root,KOG4441@2759\|Eukaryota
Description	protein ubiquitination
COG category	KLT
BRITE	ko00000,ko04121,ko04131

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi6907	Gvermi6907	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_24229 411456..413090 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6907.t1.start1	Gvermi6907.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_24229 411456..411458 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6907.t1.CDS1	Gvermi6907.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_24229 411456..413090 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6907.t1.exon1	Gvermi6907.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_24229 411456..413090 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6907.t1.stop1	Gvermi6907.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_24229 413088..413090 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6907.t1	Gvermi6907.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_24229 411456..413090 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_24229:411456..413090+
coding sequence from alignment at ScGOVlb_24229:411456..413090+

mRNA sequence

>Gvermi6907.t1 ID=Gvermi6907.t1|Name=Gvermi6907.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=545bp
MKICFLVLSAAFCSIALGNDGNNFIKVNVGGGGLEDIGFLQDESYFHDSS
SGVVQSYSDPGFVAPDSIWGEVYRTHQYAEGGSLTYRFPVPAGLFKVGLM
FMEQFDGAARAGGRIMDLYINGEALDRGIDVWSSAGGKLYEPFFLQKLDI
ASVDGYITITLDPVVENPMLSGIVIEGKAASSVLWNTVNGATPAPSAMIA
GAATPVAAPTSGFEAPSSFDVVPMTTSGVWSNVEYNSGKPTPRHEACALF
ADGVVYSIGGRGKKDISAYNPLTKTWTSKSGPPVELNHMQCVYYDGKIWI
GGSWHGRFPMEKEHEVMWVYDIATDSWSQKTGLGEGRRRGGGAFVLHEGK
MYLSHGAIGGHGAHAVSTGLLDVYDPASDSWTALLPAPNARDHTTGAVVN
GKLCVGGGRDGGTADFWNANVGPIDCYNFASGAWEVKASLPVPRGGTMVG
TTCSGLLMIAGGEGKTAEKPSGQAFARVDLFREETNTFEEASYMSSARHG
SGLAITSCECGHIYVPSGSAGLGGGPEVDTTDVWTADGVVKTCV*

spliced messenger RNA

>Gvermi6907.t1 ID=Gvermi6907.t1|Name=Gvermi6907.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1635bp|location=Sequence derived from alignment at ScGOVlb_24229:411456..413090+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGATATGCTTTCTGGTGCTGAGTGCGGCATTTTGCTCCATTGCGCT
TGGTAATGACGGAAACAACTTTATCAAGGTCAATGTTGGAGGAGGGGGGC
TCGAGGATATAGGCTTCTTGCAAGATGAGTCCTACTTCCACGACTCGAGC
AGCGGGGTTGTGCAGTCGTACAGCGACCCTGGTTTTGTGGCTCCTGACTC
AATTTGGGGTGAGGTTTATCGCACACACCAATACGCGGAGGGAGGTTCTT
TGACGTACCGCTTCCCAGTACCGGCTGGCCTCTTCAAGGTTGGGCTCATG
TTCATGGAACAATTCGATGGAGCGGCCAGAGCCGGAGGACGCATCATGGA
CCTGTACATTAACGGCGAAGCGCTCGACAGGGGCATCGACGTTTGGTCGT
CTGCGGGGGGAAAGCTTTATGAACCTTTCTTTCTTCAGAAGCTGGACATT
GCTTCGGTTGACGGATATATCACCATCACGCTCGACCCCGTTGTTGAAAA
TCCAATGCTCAGCGGGATTGTGATCGAGGGAAAGGCGGCTTCCAGCGTTC
TGTGGAACACAGTAAACGGCGCGACACCGGCTCCATCTGCGATGATCGCG
GGAGCTGCCACACCGGTTGCTGCGCCGACGTCGGGGTTTGAAGCGCCGTC
ATCGTTTGACGTTGTTCCTATGACAACAAGCGGAGTATGGTCCAATGTGG
AGTACAACTCTGGCAAGCCCACGCCGAGACACGAGGCGTGCGCGTTGTTC
GCCGATGGGGTAGTGTACAGTATTGGAGGGCGTGGCAAAAAGGACATCAG
CGCGTACAACCCGCTGACAAAGACATGGACGTCAAAGAGCGGGCCGCCCG
TCGAACTCAATCACATGCAATGCGTGTACTACGACGGCAAGATCTGGATC
GGGGGCAGTTGGCACGGACGCTTCCCCATGGAGAAGGAACACGAAGTGAT
GTGGGTGTACGACATTGCGACGGACTCGTGGTCGCAGAAGACGGGTTTGG
GGGAAGGGCGTCGGCGCGGCGGCGGAGCGTTCGTGCTGCACGAGGGAAAG
ATGTACCTGTCGCACGGGGCGATCGGCGGGCACGGGGCGCACGCGGTGTC
CACCGGTCTGCTTGACGTGTACGACCCGGCAAGCGACTCTTGGACGGCGC
TGCTGCCCGCGCCGAACGCGAGGGACCACACGACGGGGGCTGTGGTGAAC
GGCAAGCTGTGCGTGGGTGGGGGGCGCGACGGCGGAACGGCGGACTTTTG
GAACGCCAACGTGGGGCCGATCGACTGCTACAACTTTGCGAGCGGGGCAT
GGGAGGTGAAGGCGTCGCTTCCGGTGCCGCGGGGAGGGACGATGGTGGGG
ACGACGTGCAGCGGGCTGCTGATGATCGCCGGTGGGGAGGGCAAGACGGC
CGAAAAGCCGAGTGGTCAGGCGTTTGCGCGCGTGGACTTGTTCCGCGAGG
AGACGAACACGTTTGAGGAGGCAAGTTACATGAGCAGCGCCCGTCACGGG
TCAGGGCTGGCCATCACGTCGTGCGAGTGCGGACACATCTACGTGCCGTC
CGggtcggctggactgggcggcggaccagaggtggacacgacggacgtgt
ggacggcggacggaGTGGTGAAGACGTGTGTTTGA

protein sequence of Gvermi6907.t1

>Gvermi6907.t1 ID=Gvermi6907.t1|Name=Gvermi6907.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=545bp
MKICFLVLSAAFCSIALGNDGNNFIKVNVGGGGLEDIGFLQDESYFHDSS
SGVVQSYSDPGFVAPDSIWGEVYRTHQYAEGGSLTYRFPVPAGLFKVGLM
FMEQFDGAARAGGRIMDLYINGEALDRGIDVWSSAGGKLYEPFFLQKLDI
ASVDGYITITLDPVVENPMLSGIVIEGKAASSVLWNTVNGATPAPSAMIA
GAATPVAAPTSGFEAPSSFDVVPMTTSGVWSNVEYNSGKPTPRHEACALF
ADGVVYSIGGRGKKDISAYNPLTKTWTSKSGPPVELNHMQCVYYDGKIWI
GGSWHGRFPMEKEHEVMWVYDIATDSWSQKTGLGEGRRRGGGAFVLHEGK
MYLSHGAIGGHGAHAVSTGLLDVYDPASDSWTALLPAPNARDHTTGAVVN
GKLCVGGGRDGGTADFWNANVGPIDCYNFASGAWEVKASLPVPRGGTMVG
TTCSGLLMIAGGEGKTAEKPSGQAFARVDLFREETNTFEEASYMSSARHG
SGLAITSCECGHIYVPSGSAGLGGGPEVDTTDVWTADGVVKTCV*

mRNA from alignment at ScGOVlb_24229:411456..413090+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi6907.t1 ID=Gvermi6907.t1|Name=Gvermi6907.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1635bp|location=Sequence derived from alignment at ScGOVlb_24229:411456..413090+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAAGATATGCTTTCTGGTGCTGAGTGCGGCATTTTGCTCCATTGCGCT
TGGTAATGACGGAAACAACTTTATCAAGGTCAATGTTGGAGGAGGGGGGC
TCGAGGATATAGGCTTCTTGCAAGATGAGTCCTACTTCCACGACTCGAGC
AGCGGGGTTGTGCAGTCGTACAGCGACCCTGGTTTTGTGGCTCCTGACTC
AATTTGGGGTGAGGTTTATCGCACACACCAATACGCGGAGGGAGGTTCTT
TGACGTACCGCTTCCCAGTACCGGCTGGCCTCTTCAAGGTTGGGCTCATG
TTCATGGAACAATTCGATGGAGCGGCCAGAGCCGGAGGACGCATCATGGA
CCTGTACATTAACGGCGAAGCGCTCGACAGGGGCATCGACGTTTGGTCGT
CTGCGGGGGGAAAGCTTTATGAACCTTTCTTTCTTCAGAAGCTGGACATT
GCTTCGGTTGACGGATATATCACCATCACGCTCGACCCCGTTGTTGAAAA
TCCAATGCTCAGCGGGATTGTGATCGAGGGAAAGGCGGCTTCCAGCGTTC
TGTGGAACACAGTAAACGGCGCGACACCGGCTCCATCTGCGATGATCGCG
GGAGCTGCCACACCGGTTGCTGCGCCGACGTCGGGGTTTGAAGCGCCGTC
ATCGTTTGACGTTGTTCCTATGACAACAAGCGGAGTATGGTCCAATGTGG
AGTACAACTCTGGCAAGCCCACGCCGAGACACGAGGCGTGCGCGTTGTTC
GCCGATGGGGTAGTGTACAGTATTGGAGGGCGTGGCAAAAAGGACATCAG
CGCGTACAACCCGCTGACAAAGACATGGACGTCAAAGAGCGGGCCGCCCG
TCGAACTCAATCACATGCAATGCGTGTACTACGACGGCAAGATCTGGATC
GGGGGCAGTTGGCACGGACGCTTCCCCATGGAGAAGGAACACGAAGTGAT
GTGGGTGTACGACATTGCGACGGACTCGTGGTCGCAGAAGACGGGTTTGG
GGGAAGGGCGTCGGCGCGGCGGCGGAGCGTTCGTGCTGCACGAGGGAAAG
ATGTACCTGTCGCACGGGGCGATCGGCGGGCACGGGGCGCACGCGGTGTC
CACCGGTCTGCTTGACGTGTACGACCCGGCAAGCGACTCTTGGACGGCGC
TGCTGCCCGCGCCGAACGCGAGGGACCACACGACGGGGGCTGTGGTGAAC
GGCAAGCTGTGCGTGGGTGGGGGGCGCGACGGCGGAACGGCGGACTTTTG
GAACGCCAACGTGGGGCCGATCGACTGCTACAACTTTGCGAGCGGGGCAT
GGGAGGTGAAGGCGTCGCTTCCGGTGCCGCGGGGAGGGACGATGGTGGGG
ACGACGTGCAGCGGGCTGCTGATGATCGCCGGTGGGGAGGGCAAGACGGC
CGAAAAGCCGAGTGGTCAGGCGTTTGCGCGCGTGGACTTGTTCCGCGAGG
AGACGAACACGTTTGAGGAGGCAAGTTACATGAGCAGCGCCCGTCACGGG
TCAGGGCTGGCCATCACGTCGTGCGAGTGCGGACACATCTACGTGCCGTC
CGggtcggctggactgggcggcggaccagaggtggacacgacggacgtgt
ggacggcggacggaGTGGTGAAGACGTGTGTTTGA

Coding sequence (CDS) from alignment at ScGOVlb_24229:411456..413090+

>Gvermi6907.t1 ID=Gvermi6907.t1|Name=Gvermi6907.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1635bp|location=Sequence derived from alignment at ScGOVlb_24229:411456..413090+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAAGATATGCTTTCTGGTGCTGAGTGCGGCATTTTGCTCCATTGCGCT
TGGTAATGACGGAAACAACTTTATCAAGGTCAATGTTGGAGGAGGGGGGC
TCGAGGATATAGGCTTCTTGCAAGATGAGTCCTACTTCCACGACTCGAGC
AGCGGGGTTGTGCAGTCGTACAGCGACCCTGGTTTTGTGGCTCCTGACTC
AATTTGGGGTGAGGTTTATCGCACACACCAATACGCGGAGGGAGGTTCTT
TGACGTACCGCTTCCCAGTACCGGCTGGCCTCTTCAAGGTTGGGCTCATG
TTCATGGAACAATTCGATGGAGCGGCCAGAGCCGGAGGACGCATCATGGA
CCTGTACATTAACGGCGAAGCGCTCGACAGGGGCATCGACGTTTGGTCGT
CTGCGGGGGGAAAGCTTTATGAACCTTTCTTTCTTCAGAAGCTGGACATT
GCTTCGGTTGACGGATATATCACCATCACGCTCGACCCCGTTGTTGAAAA
TCCAATGCTCAGCGGGATTGTGATCGAGGGAAAGGCGGCTTCCAGCGTTC
TGTGGAACACAGTAAACGGCGCGACACCGGCTCCATCTGCGATGATCGCG
GGAGCTGCCACACCGGTTGCTGCGCCGACGTCGGGGTTTGAAGCGCCGTC
ATCGTTTGACGTTGTTCCTATGACAACAAGCGGAGTATGGTCCAATGTGG
AGTACAACTCTGGCAAGCCCACGCCGAGACACGAGGCGTGCGCGTTGTTC
GCCGATGGGGTAGTGTACAGTATTGGAGGGCGTGGCAAAAAGGACATCAG
CGCGTACAACCCGCTGACAAAGACATGGACGTCAAAGAGCGGGCCGCCCG
TCGAACTCAATCACATGCAATGCGTGTACTACGACGGCAAGATCTGGATC
GGGGGCAGTTGGCACGGACGCTTCCCCATGGAGAAGGAACACGAAGTGAT
GTGGGTGTACGACATTGCGACGGACTCGTGGTCGCAGAAGACGGGTTTGG
GGGAAGGGCGTCGGCGCGGCGGCGGAGCGTTCGTGCTGCACGAGGGAAAG
ATGTACCTGTCGCACGGGGCGATCGGCGGGCACGGGGCGCACGCGGTGTC
CACCGGTCTGCTTGACGTGTACGACCCGGCAAGCGACTCTTGGACGGCGC
TGCTGCCCGCGCCGAACGCGAGGGACCACACGACGGGGGCTGTGGTGAAC
GGCAAGCTGTGCGTGGGTGGGGGGCGCGACGGCGGAACGGCGGACTTTTG
GAACGCCAACGTGGGGCCGATCGACTGCTACAACTTTGCGAGCGGGGCAT
GGGAGGTGAAGGCGTCGCTTCCGGTGCCGCGGGGAGGGACGATGGTGGGG
ACGACGTGCAGCGGGCTGCTGATGATCGCCGGTGGGGAGGGCAAGACGGC
CGAAAAGCCGAGTGGTCAGGCGTTTGCGCGCGTGGACTTGTTCCGCGAGG
AGACGAACACGTTTGAGGAGGCAAGTTACATGAGCAGCGCCCGTCACGGG
TCAGGGCTGGCCATCACGTCGTGCGAGTGCGGACACATCTACGTGCCGTC
CGggtcggctggactgggcggcggaccagaggtggacacgacggacgtgt
ggacggcggacggaGTGGTGAAGACGTGTGTTTGA