Gvermi6906.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi6906.t1
Unique NameGvermi6906.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length487
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24229contigScGOVlb_24229:407145..408605 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi6906Gvermi6906Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_24229 407145..408605 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6906.t1.stop1Gvermi6906.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_24229 407145..407147 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6906.t1.CDS1Gvermi6906.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24229 407145..408605 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6906.t1.exon1Gvermi6906.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24229 407145..408605 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6906.t1.start1Gvermi6906.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_24229 408603..408605 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6906.t1Gvermi6906.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_24229 407145..408605 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi6906.t1 ID=Gvermi6906.t1|Name=Gvermi6906.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=487bp
MVSNLNPGSNVPKETPWGLSWEELFTSLRPSYEENMVMKSIASQVEDVLK
NANLPHELIMGSSFGKKTMMKGETKLHIYSIQQDFQPENYFEAHLKPILQ
ALKSEKRFAELKESGFAAVFHTNGIEVHLYAAGTLYGGPKDLLLPPKTVD
KQSFQLIPEVARGYALARDVHVETSCSILRTQVIANQAPLYHDLVRVAKK
WRSTSDFMSKADIPGDYLIELLMLEAFTGAPCMAHGPELYGIVFRRFLSL
AATQCGSGSDIMADDSMPKSMLWWDRYFNRGVIDMCMAKGMLDVSRSNQC
SIIVVDPAVPFINIARSVPDWTEMRRCARESLSSFQNNDLLDSLQDKVHA
LTEGMHEAINGMRAEIEMLQRLAVSPRRWSGVVQFNEVHMNSETWTKVME
VELHTIPWQVNARKTRTDGTGYATTVDISLQMMGKKKLEQSLDVDVLFRG
GTSNLVFDSNVDHVLICKRSEIVRNRDYTMQITVIG*
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spliced messenger RNA

>Gvermi6906.t1 ID=Gvermi6906.t1|Name=Gvermi6906.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1461bp|location=Sequence derived from alignment at ScGOVlb_24229:407145..408605- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTGTCGAACTTAAATCCAGGGTCCAATGTGCCGAAAGAAACTCCTTG
GGGTCTTAGCTGGGAGGAGCTTTTCACTTCACTTCGCCCTAGTTATGAGG
AGAACATGGTGATGAAATCAATTGCCTCTCAAGTGGAAGACGTTCTGAAA
AATGCAAATCTCCCTCATGAGCTTATAATGGGATCTTCTTTCGGCAAGAA
AACAATGATGAAAGGAGAAACAAAACTACACATATACTCCATTCAGCAAG
ATTTTCAACCCGAGAATTACTTCGAGGCACACCTCAAGCCCATTTTACAA
GCGTTAAAGTCCGAAAAGCGATTTGCGGAGTTGAAGGAGAGTGGGTTTGC
AGCTGTTTTTCACACTAATGGGATTGAGGTGCACTTGTATGCGGCTGGGA
CTTTGTACGGAGGGCCAAAGGATTTACTGCTCCCGCCAAAGACCGTCGAC
AAGCAGTCTTTTCAACTGATACCAGAGGTAGCACGCGGCTATGCGCTTGC
CCGTGATGTTCATGTAGAAACCAGTTGTTCTATTCTCCGAACACAGGTCA
TTGCGAACCAAGCCCCGCTGTATCATGATCTTGTGCGCGTTGCCAAAAAA
TGGAGGTCCACCAGCGACTTCATGTCGAAAGCTGATATTCCTGGAGACTA
CCTAATTGAGTTACTGATGCTAGAAGCTTTCACAGGTGCCCCGTGTATGG
CCCATGGGCCTGAGCTCTATGGTATTGTCTTTCGTCGATTTTTGTCTTTG
GCGGCCACACAATGCGGCTCGGGATCCGACATCATGGCGGACGATAGCAT
GCCCAAGTCGATGTTGTGGTGGGATAGGTATTTTAATCGCGGAGTCATTG
ACATGTGCATGGCGAAAGGCATGCTTGATGTAAGCCGCAGCAATCAATGT
TCAATAATTGTAGTTGACCCCGCTGTTCCTTTCATCAATATCGCAAGGTC
TGTGCCGGACTGGACGGAGATGAGAAGGTGCGCTAGAGAAAGTCTGAGCA
GTTTTCAGAACAACGATCTGCTTGATAGTCTACAGGACAAAGTGCACGCG
TTAACCGAAGGCATGCACGAGGCCATCAATGGCATGCGAGCCGAAATTGA
AATGCTACAACGCTTGGCTGTATCTCCAAGGCGGTGGTCTGGAGTTGTAC
AGTTTAATGAAGTGCACATGAACAGCGAGACTTGGACTAAGGTGATGGAA
GTCGAGCTGCACACAATTCCATGGCAAGTGAATGCTAGAAAAACCAGAAC
GGACGGTACCGGATATGCCACGACGGTTGACATTAGCTTGCAAATGATGG
GAAAGAAAAAACTTGAACAAAGCTTGGATGTTGATGTGCTATTCAGGGGC
GGGACAAGTAATCTCGTCTTCGACTCTAACGTCGATCATGTCCTTATTTG
TAAGCGCTCAGAAATTGTACGGAACAGGGATTACACAATGCAGATCACCG
TCATTGGTTAA
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protein sequence of Gvermi6906.t1

>Gvermi6906.t1 ID=Gvermi6906.t1|Name=Gvermi6906.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=487bp
MVSNLNPGSNVPKETPWGLSWEELFTSLRPSYEENMVMKSIASQVEDVLK
NANLPHELIMGSSFGKKTMMKGETKLHIYSIQQDFQPENYFEAHLKPILQ
ALKSEKRFAELKESGFAAVFHTNGIEVHLYAAGTLYGGPKDLLLPPKTVD
KQSFQLIPEVARGYALARDVHVETSCSILRTQVIANQAPLYHDLVRVAKK
WRSTSDFMSKADIPGDYLIELLMLEAFTGAPCMAHGPELYGIVFRRFLSL
AATQCGSGSDIMADDSMPKSMLWWDRYFNRGVIDMCMAKGMLDVSRSNQC
SIIVVDPAVPFINIARSVPDWTEMRRCARESLSSFQNNDLLDSLQDKVHA
LTEGMHEAINGMRAEIEMLQRLAVSPRRWSGVVQFNEVHMNSETWTKVME
VELHTIPWQVNARKTRTDGTGYATTVDISLQMMGKKKLEQSLDVDVLFRG
GTSNLVFDSNVDHVLICKRSEIVRNRDYTMQITVIG*
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mRNA from alignment at ScGOVlb_24229:407145..408605-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi6906.t1 ID=Gvermi6906.t1|Name=Gvermi6906.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1461bp|location=Sequence derived from alignment at ScGOVlb_24229:407145..408605- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGTGTCGAACTTAAATCCAGGGTCCAATGTGCCGAAAGAAACTCCTTG
GGGTCTTAGCTGGGAGGAGCTTTTCACTTCACTTCGCCCTAGTTATGAGG
AGAACATGGTGATGAAATCAATTGCCTCTCAAGTGGAAGACGTTCTGAAA
AATGCAAATCTCCCTCATGAGCTTATAATGGGATCTTCTTTCGGCAAGAA
AACAATGATGAAAGGAGAAACAAAACTACACATATACTCCATTCAGCAAG
ATTTTCAACCCGAGAATTACTTCGAGGCACACCTCAAGCCCATTTTACAA
GCGTTAAAGTCCGAAAAGCGATTTGCGGAGTTGAAGGAGAGTGGGTTTGC
AGCTGTTTTTCACACTAATGGGATTGAGGTGCACTTGTATGCGGCTGGGA
CTTTGTACGGAGGGCCAAAGGATTTACTGCTCCCGCCAAAGACCGTCGAC
AAGCAGTCTTTTCAACTGATACCAGAGGTAGCACGCGGCTATGCGCTTGC
CCGTGATGTTCATGTAGAAACCAGTTGTTCTATTCTCCGAACACAGGTCA
TTGCGAACCAAGCCCCGCTGTATCATGATCTTGTGCGCGTTGCCAAAAAA
TGGAGGTCCACCAGCGACTTCATGTCGAAAGCTGATATTCCTGGAGACTA
CCTAATTGAGTTACTGATGCTAGAAGCTTTCACAGGTGCCCCGTGTATGG
CCCATGGGCCTGAGCTCTATGGTATTGTCTTTCGTCGATTTTTGTCTTTG
GCGGCCACACAATGCGGCTCGGGATCCGACATCATGGCGGACGATAGCAT
GCCCAAGTCGATGTTGTGGTGGGATAGGTATTTTAATCGCGGAGTCATTG
ACATGTGCATGGCGAAAGGCATGCTTGATGTAAGCCGCAGCAATCAATGT
TCAATAATTGTAGTTGACCCCGCTGTTCCTTTCATCAATATCGCAAGGTC
TGTGCCGGACTGGACGGAGATGAGAAGGTGCGCTAGAGAAAGTCTGAGCA
GTTTTCAGAACAACGATCTGCTTGATAGTCTACAGGACAAAGTGCACGCG
TTAACCGAAGGCATGCACGAGGCCATCAATGGCATGCGAGCCGAAATTGA
AATGCTACAACGCTTGGCTGTATCTCCAAGGCGGTGGTCTGGAGTTGTAC
AGTTTAATGAAGTGCACATGAACAGCGAGACTTGGACTAAGGTGATGGAA
GTCGAGCTGCACACAATTCCATGGCAAGTGAATGCTAGAAAAACCAGAAC
GGACGGTACCGGATATGCCACGACGGTTGACATTAGCTTGCAAATGATGG
GAAAGAAAAAACTTGAACAAAGCTTGGATGTTGATGTGCTATTCAGGGGC
GGGACAAGTAATCTCGTCTTCGACTCTAACGTCGATCATGTCCTTATTTG
TAAGCGCTCAGAAATTGTACGGAACAGGGATTACACAATGCAGATCACCG
TCATTGGTTAA
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Coding sequence (CDS) from alignment at ScGOVlb_24229:407145..408605-

>Gvermi6906.t1 ID=Gvermi6906.t1|Name=Gvermi6906.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1461bp|location=Sequence derived from alignment at ScGOVlb_24229:407145..408605- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGTGTCGAACTTAAATCCAGGGTCCAATGTGCCGAAAGAAACTCCTTG
GGGTCTTAGCTGGGAGGAGCTTTTCACTTCACTTCGCCCTAGTTATGAGG
AGAACATGGTGATGAAATCAATTGCCTCTCAAGTGGAAGACGTTCTGAAA
AATGCAAATCTCCCTCATGAGCTTATAATGGGATCTTCTTTCGGCAAGAA
AACAATGATGAAAGGAGAAACAAAACTACACATATACTCCATTCAGCAAG
ATTTTCAACCCGAGAATTACTTCGAGGCACACCTCAAGCCCATTTTACAA
GCGTTAAAGTCCGAAAAGCGATTTGCGGAGTTGAAGGAGAGTGGGTTTGC
AGCTGTTTTTCACACTAATGGGATTGAGGTGCACTTGTATGCGGCTGGGA
CTTTGTACGGAGGGCCAAAGGATTTACTGCTCCCGCCAAAGACCGTCGAC
AAGCAGTCTTTTCAACTGATACCAGAGGTAGCACGCGGCTATGCGCTTGC
CCGTGATGTTCATGTAGAAACCAGTTGTTCTATTCTCCGAACACAGGTCA
TTGCGAACCAAGCCCCGCTGTATCATGATCTTGTGCGCGTTGCCAAAAAA
TGGAGGTCCACCAGCGACTTCATGTCGAAAGCTGATATTCCTGGAGACTA
CCTAATTGAGTTACTGATGCTAGAAGCTTTCACAGGTGCCCCGTGTATGG
CCCATGGGCCTGAGCTCTATGGTATTGTCTTTCGTCGATTTTTGTCTTTG
GCGGCCACACAATGCGGCTCGGGATCCGACATCATGGCGGACGATAGCAT
GCCCAAGTCGATGTTGTGGTGGGATAGGTATTTTAATCGCGGAGTCATTG
ACATGTGCATGGCGAAAGGCATGCTTGATGTAAGCCGCAGCAATCAATGT
TCAATAATTGTAGTTGACCCCGCTGTTCCTTTCATCAATATCGCAAGGTC
TGTGCCGGACTGGACGGAGATGAGAAGGTGCGCTAGAGAAAGTCTGAGCA
GTTTTCAGAACAACGATCTGCTTGATAGTCTACAGGACAAAGTGCACGCG
TTAACCGAAGGCATGCACGAGGCCATCAATGGCATGCGAGCCGAAATTGA
AATGCTACAACGCTTGGCTGTATCTCCAAGGCGGTGGTCTGGAGTTGTAC
AGTTTAATGAAGTGCACATGAACAGCGAGACTTGGACTAAGGTGATGGAA
GTCGAGCTGCACACAATTCCATGGCAAGTGAATGCTAGAAAAACCAGAAC
GGACGGTACCGGATATGCCACGACGGTTGACATTAGCTTGCAAATGATGG
GAAAGAAAAAACTTGAACAAAGCTTGGATGTTGATGTGCTATTCAGGGGC
GGGACAAGTAATCTCGTCTTCGACTCTAACGTCGATCATGTCCTTATTTG
TAAGCGCTCAGAAATTGTACGGAACAGGGATTACACAATGCAGATCACCG
TCATTGGTTAA
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