Gvermi6904.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi6904.t1
Unique NameGvermi6904.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length508
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24229contigScGOVlb_24229:402592..404115 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog61622.XP_010359668.1
Preferred namePYROXD1
PFAMsPyr_redox_2
Max annot lvl33208|Metazoa
KEGG koko:K16174
KEGG Pathwayko05203,map05203
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0006950,GO:0006979,GO:0008150,GO:0009987,GO:0030016,GO:0030017,GO:0033554,GO:0034599,GO:0042221,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043292,GO:0044422,GO:0044424,GO:0044444,GO:0044449,GO:0044464,GO:0050896,GO:0051716,GO:0070887,GO:0099080,GO:0099081,GO:0099512
Evalue4e-81
EggNOG OGsCOG0446@1|root,KOG2755@2759|Eukaryota,38EPN@33154|Opisthokonta,3BC42@33208|Metazoa,3CUPC@33213|Bilateria,4811I@7711|Chordata,497B8@7742|Vertebrata,3J4H3@40674|Mammalia,35HFX@314146|Euarchontoglires,4M8DI@9443|Primates,35ZG5@314294|Cercopithecoidea
DescriptionPyridine nucleotide-disulphide oxidoreductase domain 1
COG categoryS
BRITEko00000,ko00001,ko03011
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi6904Gvermi6904Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_24229 402592..404115 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6904.t1.start1Gvermi6904.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_24229 402592..402594 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6904.t1.CDS1Gvermi6904.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24229 402592..404115 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6904.t1.exon1Gvermi6904.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24229 402592..404115 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6904.t1.stop1Gvermi6904.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_24229 404113..404115 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6904.t1Gvermi6904.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_24229 402592..404115 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi6904.t1 ID=Gvermi6904.t1|Name=Gvermi6904.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=508bp
MQRVKPAIVVGGGIAGTTCASHLSSLIPNLPIILIEAQATVKVSSNPIDV
TQLAADVSVEIDQSRAWCEKKRIRFLQGHAVNLEPGLLTTESGLCQPFSV
CCIATGASPFIPTPLKALEFQNVILTLRDSDSVQQLAHSLSGARTVLIIG
AGGIAMELVHEISNCRVVWLFRNHIGGSFFDQRAANALSSVFNIDEPCRK
DYVQELNTSKASGIINGTGSEEENLNKIETKSTSKASVSASAVGPQWLRV
RDRPLLCNKAGIVCKDQNPIPFLHGRSEKIVNILKGCDVVKLYRDVKEEW
PVIVSLSNGEFVGCDLIVVATGVTANVDWLSDSAIDLAPYSEGRDGGIVV
KAGSMASSMPCVFAAGDCASVLPTEGSDWFQLRLWSQALTAGRVAAQNMA
ERLGFGEAYVGLEFDIFAHTTKFFGKRVVLLGRYNAQGLGNGYKEYERFG
EDYMRVVVKDGRVRGALLVGDVDSAEVLENLILTQLNVEWLGERIVDKET
DLEDYFD*
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spliced messenger RNA

>Gvermi6904.t1 ID=Gvermi6904.t1|Name=Gvermi6904.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1524bp|location=Sequence derived from alignment at ScGOVlb_24229:402592..404115+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAGCGTGTGAAGCCTGCAATTGTGGTTGGTGGTGGAATCGCAGGCAC
CACATGTGCATCGCACCTGTCGTCACTGATACCCAATCTACCTATAATCC
TAATTGAGGCGCAGGCAACCGTAAAAGTATCGTCGAACCCCATTGATGTC
ACTCAATTAGCAGCTGATGTCTCTGTAGAAATCGACCAGTCTCGTGCGTG
GTGTGAGAAGAAGAGAATCAGATTCCTTCAGGGGCATGCGGTAAACTTGG
AACCTGGACTATTAACAACAGAAAGTGGTTTGTGTCAACCATTTTCCGTA
TGCTGCATTGCAACTGGCGCGTCGCCCTTTATTCCAACGCCGCTCAAGGC
TCTGGAATTCCAGAATGTTATTCTCACATTACGTGATAGTGACTCAGTTC
AACAGCTTGCCCATTCACTATCAGGTGCGCGGACAGTCTTGATCATCGGC
GCTGGAGGAATAGCTATGGAACTCGTCCATGAGATATCAAATTGTCGTGT
TGTATGGCTATTTCGTAATCACATTGGTGGTTCTTTCTTTGACCAACGTG
CAGCAAATGCTCTTTCGAGCGTATTCAACATAGACGAGCCCTGTCGAAAA
GACTATGTTCAAGAATTGAATACATCGAAAGCTTCTGGAATCATTAACGG
TACTGGGAGTGAAGAAGAAAATCTCAACAAAATCGAAACGAAAAGCACTT
CTAAAGCTTCCGTATCAGCGTCAGCTGTTGGACCTCAATGGCTACGAGTT
CGAGACCGTCCACTTTTGTGCAATAAGGCAGGTATTGTGTGCAAGGATCA
AAATCCAATCCCATTCCTTCACGGTCGAAGTGAAAAAATAGTCAACATTC
TCAAGGGCTGCGATGTTGTGAAGCTATACAGAGATGTAAAAGAAGAATGG
CCCGTCATTGTGAGTTTATCGAATGGAGAATTTGTGGGCTGCGATCTTAT
CGTCGTCGCCACAGGTGTTACAGCCAATGTCGATTGGTTGTCCGATAGCG
CTATCGATCTAGCGCCCTACTCAGAGGGCAGGGACGGAGGGATAGTAGTC
AAAGCAGGATCGATGGCGAGCAGTATGCCGTGTGTGTTTGCCGCAGGAGA
TTGTGCTTCTGTACTCCCCACCGAGGGCTCAGACTGGTTTCAGTTACGTC
TATGGAGTCAAGCACTGACCGCAGGACGTGTCGCAGCGCAAAACATGGCA
GAACGACTTGGTTTTGGTGAAGCTTACGTTGGTCTTGAATTTGATATCTT
TGCCCATACGACAAAGTTCTTTGGCAAACGTGTTGTACTTCTTGGGCGAT
ATAATGCTCAAGGACTGGGAAACGGATACAAAGAATATGAGAGATTCGGA
GAGGATTATATGAGAGTTGTCGTCAAAGATGGACGTGTACGAGGAGCACT
CTTGGTCGGAGATGTTGATAGTGCAGAAGTTTTGGAGAACTTGATTCTAA
CGCAACTCAATGTTGAGTGGCTTGGTGAACGTATTGTGGACAAAGAGACT
GACTTGGAAGATTATTTTGACTGA
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protein sequence of Gvermi6904.t1

>Gvermi6904.t1 ID=Gvermi6904.t1|Name=Gvermi6904.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=508bp
MQRVKPAIVVGGGIAGTTCASHLSSLIPNLPIILIEAQATVKVSSNPIDV
TQLAADVSVEIDQSRAWCEKKRIRFLQGHAVNLEPGLLTTESGLCQPFSV
CCIATGASPFIPTPLKALEFQNVILTLRDSDSVQQLAHSLSGARTVLIIG
AGGIAMELVHEISNCRVVWLFRNHIGGSFFDQRAANALSSVFNIDEPCRK
DYVQELNTSKASGIINGTGSEEENLNKIETKSTSKASVSASAVGPQWLRV
RDRPLLCNKAGIVCKDQNPIPFLHGRSEKIVNILKGCDVVKLYRDVKEEW
PVIVSLSNGEFVGCDLIVVATGVTANVDWLSDSAIDLAPYSEGRDGGIVV
KAGSMASSMPCVFAAGDCASVLPTEGSDWFQLRLWSQALTAGRVAAQNMA
ERLGFGEAYVGLEFDIFAHTTKFFGKRVVLLGRYNAQGLGNGYKEYERFG
EDYMRVVVKDGRVRGALLVGDVDSAEVLENLILTQLNVEWLGERIVDKET
DLEDYFD*
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mRNA from alignment at ScGOVlb_24229:402592..404115+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi6904.t1 ID=Gvermi6904.t1|Name=Gvermi6904.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1524bp|location=Sequence derived from alignment at ScGOVlb_24229:402592..404115+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCAGCGTGTGAAGCCTGCAATTGTGGTTGGTGGTGGAATCGCAGGCAC
CACATGTGCATCGCACCTGTCGTCACTGATACCCAATCTACCTATAATCC
TAATTGAGGCGCAGGCAACCGTAAAAGTATCGTCGAACCCCATTGATGTC
ACTCAATTAGCAGCTGATGTCTCTGTAGAAATCGACCAGTCTCGTGCGTG
GTGTGAGAAGAAGAGAATCAGATTCCTTCAGGGGCATGCGGTAAACTTGG
AACCTGGACTATTAACAACAGAAAGTGGTTTGTGTCAACCATTTTCCGTA
TGCTGCATTGCAACTGGCGCGTCGCCCTTTATTCCAACGCCGCTCAAGGC
TCTGGAATTCCAGAATGTTATTCTCACATTACGTGATAGTGACTCAGTTC
AACAGCTTGCCCATTCACTATCAGGTGCGCGGACAGTCTTGATCATCGGC
GCTGGAGGAATAGCTATGGAACTCGTCCATGAGATATCAAATTGTCGTGT
TGTATGGCTATTTCGTAATCACATTGGTGGTTCTTTCTTTGACCAACGTG
CAGCAAATGCTCTTTCGAGCGTATTCAACATAGACGAGCCCTGTCGAAAA
GACTATGTTCAAGAATTGAATACATCGAAAGCTTCTGGAATCATTAACGG
TACTGGGAGTGAAGAAGAAAATCTCAACAAAATCGAAACGAAAAGCACTT
CTAAAGCTTCCGTATCAGCGTCAGCTGTTGGACCTCAATGGCTACGAGTT
CGAGACCGTCCACTTTTGTGCAATAAGGCAGGTATTGTGTGCAAGGATCA
AAATCCAATCCCATTCCTTCACGGTCGAAGTGAAAAAATAGTCAACATTC
TCAAGGGCTGCGATGTTGTGAAGCTATACAGAGATGTAAAAGAAGAATGG
CCCGTCATTGTGAGTTTATCGAATGGAGAATTTGTGGGCTGCGATCTTAT
CGTCGTCGCCACAGGTGTTACAGCCAATGTCGATTGGTTGTCCGATAGCG
CTATCGATCTAGCGCCCTACTCAGAGGGCAGGGACGGAGGGATAGTAGTC
AAAGCAGGATCGATGGCGAGCAGTATGCCGTGTGTGTTTGCCGCAGGAGA
TTGTGCTTCTGTACTCCCCACCGAGGGCTCAGACTGGTTTCAGTTACGTC
TATGGAGTCAAGCACTGACCGCAGGACGTGTCGCAGCGCAAAACATGGCA
GAACGACTTGGTTTTGGTGAAGCTTACGTTGGTCTTGAATTTGATATCTT
TGCCCATACGACAAAGTTCTTTGGCAAACGTGTTGTACTTCTTGGGCGAT
ATAATGCTCAAGGACTGGGAAACGGATACAAAGAATATGAGAGATTCGGA
GAGGATTATATGAGAGTTGTCGTCAAAGATGGACGTGTACGAGGAGCACT
CTTGGTCGGAGATGTTGATAGTGCAGAAGTTTTGGAGAACTTGATTCTAA
CGCAACTCAATGTTGAGTGGCTTGGTGAACGTATTGTGGACAAAGAGACT
GACTTGGAAGATTATTTTGACTGA
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Coding sequence (CDS) from alignment at ScGOVlb_24229:402592..404115+

>Gvermi6904.t1 ID=Gvermi6904.t1|Name=Gvermi6904.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1524bp|location=Sequence derived from alignment at ScGOVlb_24229:402592..404115+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCAGCGTGTGAAGCCTGCAATTGTGGTTGGTGGTGGAATCGCAGGCAC
CACATGTGCATCGCACCTGTCGTCACTGATACCCAATCTACCTATAATCC
TAATTGAGGCGCAGGCAACCGTAAAAGTATCGTCGAACCCCATTGATGTC
ACTCAATTAGCAGCTGATGTCTCTGTAGAAATCGACCAGTCTCGTGCGTG
GTGTGAGAAGAAGAGAATCAGATTCCTTCAGGGGCATGCGGTAAACTTGG
AACCTGGACTATTAACAACAGAAAGTGGTTTGTGTCAACCATTTTCCGTA
TGCTGCATTGCAACTGGCGCGTCGCCCTTTATTCCAACGCCGCTCAAGGC
TCTGGAATTCCAGAATGTTATTCTCACATTACGTGATAGTGACTCAGTTC
AACAGCTTGCCCATTCACTATCAGGTGCGCGGACAGTCTTGATCATCGGC
GCTGGAGGAATAGCTATGGAACTCGTCCATGAGATATCAAATTGTCGTGT
TGTATGGCTATTTCGTAATCACATTGGTGGTTCTTTCTTTGACCAACGTG
CAGCAAATGCTCTTTCGAGCGTATTCAACATAGACGAGCCCTGTCGAAAA
GACTATGTTCAAGAATTGAATACATCGAAAGCTTCTGGAATCATTAACGG
TACTGGGAGTGAAGAAGAAAATCTCAACAAAATCGAAACGAAAAGCACTT
CTAAAGCTTCCGTATCAGCGTCAGCTGTTGGACCTCAATGGCTACGAGTT
CGAGACCGTCCACTTTTGTGCAATAAGGCAGGTATTGTGTGCAAGGATCA
AAATCCAATCCCATTCCTTCACGGTCGAAGTGAAAAAATAGTCAACATTC
TCAAGGGCTGCGATGTTGTGAAGCTATACAGAGATGTAAAAGAAGAATGG
CCCGTCATTGTGAGTTTATCGAATGGAGAATTTGTGGGCTGCGATCTTAT
CGTCGTCGCCACAGGTGTTACAGCCAATGTCGATTGGTTGTCCGATAGCG
CTATCGATCTAGCGCCCTACTCAGAGGGCAGGGACGGAGGGATAGTAGTC
AAAGCAGGATCGATGGCGAGCAGTATGCCGTGTGTGTTTGCCGCAGGAGA
TTGTGCTTCTGTACTCCCCACCGAGGGCTCAGACTGGTTTCAGTTACGTC
TATGGAGTCAAGCACTGACCGCAGGACGTGTCGCAGCGCAAAACATGGCA
GAACGACTTGGTTTTGGTGAAGCTTACGTTGGTCTTGAATTTGATATCTT
TGCCCATACGACAAAGTTCTTTGGCAAACGTGTTGTACTTCTTGGGCGAT
ATAATGCTCAAGGACTGGGAAACGGATACAAAGAATATGAGAGATTCGGA
GAGGATTATATGAGAGTTGTCGTCAAAGATGGACGTGTACGAGGAGCACT
CTTGGTCGGAGATGTTGATAGTGCAGAAGTTTTGGAGAACTTGATTCTAA
CGCAACTCAATGTTGAGTGGCTTGGTGAACGTATTGTGGACAAAGAGACT
GACTTGGAAGATTATTTTGACTGA
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