Gvermi6903.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi6903.t1
Unique NameGvermi6903.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length360
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24229contigScGOVlb_24229:401017..402096 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog242159.ABO95885
PFAMsTPR_16
Max annot lvl3041|Chlorophyta
Evalue3.84e-16
EggNOG OGs2CV6Q@1|root,2RREP@2759|Eukaryota,380E2@33090|Viridiplantae,34MI7@3041|Chlorophyta
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi6903Gvermi6903Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_24229 401017..402096 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6903.t1.stop1Gvermi6903.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_24229 401017..401019 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6903.t1.CDS1Gvermi6903.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24229 401017..402096 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6903.t1.exon1Gvermi6903.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24229 401017..402096 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6903.t1.start1Gvermi6903.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_24229 402094..402096 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6903.t1Gvermi6903.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_24229 401017..402096 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi6903.t1 ID=Gvermi6903.t1|Name=Gvermi6903.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=360bp
MSPVPRNGRHSRRSAAKSARRAKRKALNSSNSVSADELLREAKACETAGQ
LQDAVSKLEQAVSLKADAGTYEELASLYMQLTRSEDALHALRAAVKLQPD
HGFEKYAYIAQLLGNTEEAVMSARKGIELIKMEIMSMDKSHEDRILELRE
FQASAHCSVAEICLGIIEESNDPALAQKMDIEIEKEIMEALAVSAEGSVS
EQESLTALANLRLSQGRAADAKEAMVRVLACLSHGLKMLQQEDISDRVLV
AAMEKLPPMEIRIAIGKQFMEVGMWFEAETILSSIMYECDFNVEVWYLLA
VTHWKRRQVSDARECLKQTRTLLQRPDGYDGELEEEMIDKLYVELEKISI
APKKDITQQ*
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spliced messenger RNA

>Gvermi6903.t1 ID=Gvermi6903.t1|Name=Gvermi6903.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1080bp|location=Sequence derived from alignment at ScGOVlb_24229:401017..402096- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTCCAGTCCCCAGGAATGGACGTCACTCTCGCCGTTCTGCGGCAAA
GTCTGCTAGGAGAGCCAAACGGAAAGCTCTCAACTCATCCAATTCAGTTT
CCGCCGATGAGCTCCTGCGGGAAGCTAAGGCCTGCGAAACAGCCGGCCAG
CTGCAGGATGCGGTGTCCAAATTGGAACAAGCAGTGTCATTAAAGGCAGA
TGCGGGTACTTACGAAGAGCTTGCGTCTCTCTACATGCAACTAACAAGGT
CTGAAGACGCTTTGCATGCTCTACGCGCTGCAGTGAAGCTCCAGCCGGAT
CATGGGTTTGAAAAGTACGCCTACATTGCCCAGCTTCTCGGAAACACTGA
AGAAGCCGTGATGAGTGCTCGTAAGGGTATCGAGCTGATAAAGATGGAGA
TTATGAGCATGGACAAGTCGCATGAAGATCGTATTCTCGAGCTGCGGGAG
TTCCAGGCAAGTGCGCACTGTTCTGTGGCGGAAATATGTTTGGGAATCAT
CGAGGAAAGCAATGACCCCGCCCTGGCTCAGAAAATGGATATCGAGATTG
AAAAGGAAATAATGGAGGCACTTGCCGTGAGTGCAGAGGGCAGCGTTTCG
GAACAAGAATCATTGACTGCGTTAGCAAATCTGCGTTTAAGTCAAGGCAG
GGCAGCAGATGCGAAAGAAGCCATGGTTCGCGTTTTGGCTTGTCTGTCGC
ATGGATTAAAAATGCTTCAGCAGGAAGATATTTCTGACAGAGTACTAGTA
GCTGCAATGGAGAAACTACCACCTATGGAGATTCGAATAGCCATTGGGAA
ACAGTTCATGGAAGTTGGCATGTGGTTTGAGGCGGAGACTATTTTGTCTT
CAATCATGTACGAGTGTGATTTCAATGTCGAAGTCTGGTACCTACTTGCC
GTAACTCATTGGAAGCGACGACAAGTGTCGGACGCACGAGAATGTCTAAA
ACAGACGCGAACTTTGTTGCAGCGGCCAGACGGTTACGACGGTGAACTTG
AAGAGGAGATGATTGATAAATTGTACGTGGAGTTAGAAAAAATTAGTATT
GCTCCCAAGAAAGACATCACTCAGCAATAG
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protein sequence of Gvermi6903.t1

>Gvermi6903.t1 ID=Gvermi6903.t1|Name=Gvermi6903.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=360bp
MSPVPRNGRHSRRSAAKSARRAKRKALNSSNSVSADELLREAKACETAGQ
LQDAVSKLEQAVSLKADAGTYEELASLYMQLTRSEDALHALRAAVKLQPD
HGFEKYAYIAQLLGNTEEAVMSARKGIELIKMEIMSMDKSHEDRILELRE
FQASAHCSVAEICLGIIEESNDPALAQKMDIEIEKEIMEALAVSAEGSVS
EQESLTALANLRLSQGRAADAKEAMVRVLACLSHGLKMLQQEDISDRVLV
AAMEKLPPMEIRIAIGKQFMEVGMWFEAETILSSIMYECDFNVEVWYLLA
VTHWKRRQVSDARECLKQTRTLLQRPDGYDGELEEEMIDKLYVELEKISI
APKKDITQQ*
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mRNA from alignment at ScGOVlb_24229:401017..402096-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi6903.t1 ID=Gvermi6903.t1|Name=Gvermi6903.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1080bp|location=Sequence derived from alignment at ScGOVlb_24229:401017..402096- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTCTCCAGTCCCCAGGAATGGACGTCACTCTCGCCGTTCTGCGGCAAA
GTCTGCTAGGAGAGCCAAACGGAAAGCTCTCAACTCATCCAATTCAGTTT
CCGCCGATGAGCTCCTGCGGGAAGCTAAGGCCTGCGAAACAGCCGGCCAG
CTGCAGGATGCGGTGTCCAAATTGGAACAAGCAGTGTCATTAAAGGCAGA
TGCGGGTACTTACGAAGAGCTTGCGTCTCTCTACATGCAACTAACAAGGT
CTGAAGACGCTTTGCATGCTCTACGCGCTGCAGTGAAGCTCCAGCCGGAT
CATGGGTTTGAAAAGTACGCCTACATTGCCCAGCTTCTCGGAAACACTGA
AGAAGCCGTGATGAGTGCTCGTAAGGGTATCGAGCTGATAAAGATGGAGA
TTATGAGCATGGACAAGTCGCATGAAGATCGTATTCTCGAGCTGCGGGAG
TTCCAGGCAAGTGCGCACTGTTCTGTGGCGGAAATATGTTTGGGAATCAT
CGAGGAAAGCAATGACCCCGCCCTGGCTCAGAAAATGGATATCGAGATTG
AAAAGGAAATAATGGAGGCACTTGCCGTGAGTGCAGAGGGCAGCGTTTCG
GAACAAGAATCATTGACTGCGTTAGCAAATCTGCGTTTAAGTCAAGGCAG
GGCAGCAGATGCGAAAGAAGCCATGGTTCGCGTTTTGGCTTGTCTGTCGC
ATGGATTAAAAATGCTTCAGCAGGAAGATATTTCTGACAGAGTACTAGTA
GCTGCAATGGAGAAACTACCACCTATGGAGATTCGAATAGCCATTGGGAA
ACAGTTCATGGAAGTTGGCATGTGGTTTGAGGCGGAGACTATTTTGTCTT
CAATCATGTACGAGTGTGATTTCAATGTCGAAGTCTGGTACCTACTTGCC
GTAACTCATTGGAAGCGACGACAAGTGTCGGACGCACGAGAATGTCTAAA
ACAGACGCGAACTTTGTTGCAGCGGCCAGACGGTTACGACGGTGAACTTG
AAGAGGAGATGATTGATAAATTGTACGTGGAGTTAGAAAAAATTAGTATT
GCTCCCAAGAAAGACATCACTCAGCAATAG
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Coding sequence (CDS) from alignment at ScGOVlb_24229:401017..402096-

>Gvermi6903.t1 ID=Gvermi6903.t1|Name=Gvermi6903.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1080bp|location=Sequence derived from alignment at ScGOVlb_24229:401017..402096- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTCTCCAGTCCCCAGGAATGGACGTCACTCTCGCCGTTCTGCGGCAAA
GTCTGCTAGGAGAGCCAAACGGAAAGCTCTCAACTCATCCAATTCAGTTT
CCGCCGATGAGCTCCTGCGGGAAGCTAAGGCCTGCGAAACAGCCGGCCAG
CTGCAGGATGCGGTGTCCAAATTGGAACAAGCAGTGTCATTAAAGGCAGA
TGCGGGTACTTACGAAGAGCTTGCGTCTCTCTACATGCAACTAACAAGGT
CTGAAGACGCTTTGCATGCTCTACGCGCTGCAGTGAAGCTCCAGCCGGAT
CATGGGTTTGAAAAGTACGCCTACATTGCCCAGCTTCTCGGAAACACTGA
AGAAGCCGTGATGAGTGCTCGTAAGGGTATCGAGCTGATAAAGATGGAGA
TTATGAGCATGGACAAGTCGCATGAAGATCGTATTCTCGAGCTGCGGGAG
TTCCAGGCAAGTGCGCACTGTTCTGTGGCGGAAATATGTTTGGGAATCAT
CGAGGAAAGCAATGACCCCGCCCTGGCTCAGAAAATGGATATCGAGATTG
AAAAGGAAATAATGGAGGCACTTGCCGTGAGTGCAGAGGGCAGCGTTTCG
GAACAAGAATCATTGACTGCGTTAGCAAATCTGCGTTTAAGTCAAGGCAG
GGCAGCAGATGCGAAAGAAGCCATGGTTCGCGTTTTGGCTTGTCTGTCGC
ATGGATTAAAAATGCTTCAGCAGGAAGATATTTCTGACAGAGTACTAGTA
GCTGCAATGGAGAAACTACCACCTATGGAGATTCGAATAGCCATTGGGAA
ACAGTTCATGGAAGTTGGCATGTGGTTTGAGGCGGAGACTATTTTGTCTT
CAATCATGTACGAGTGTGATTTCAATGTCGAAGTCTGGTACCTACTTGCC
GTAACTCATTGGAAGCGACGACAAGTGTCGGACGCACGAGAATGTCTAAA
ACAGACGCGAACTTTGTTGCAGCGGCCAGACGGTTACGACGGTGAACTTG
AAGAGGAGATGATTGATAAATTGTACGTGGAGTTAGAAAAAATTAGTATT
GCTCCCAAGAAAGACATCACTCAGCAATAG
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