Gvermi6901.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi6901.t1
Unique NameGvermi6901.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length475
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24229contigScGOVlb_24229:396212..397636 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog7209.EJD76726.1
Preferred nameSTK24
PFAMsDUF1241,Pkinase
Max annot lvl33208|Metazoa
KEGG koko:K08838
GOsGO:0000139,GO:0000165,GO:0000166,GO:0000185,GO:0000287,GO:0000302,GO:0000902,GO:0001932,GO:0001933,GO:0001934,GO:0002009,GO:0003674,GO:0003824,GO:0004672,GO:0004674,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005794,GO:0005798,GO:0005829,GO:0005886,GO:0006464,GO:0006468,GO:0006469,GO:0006793,GO:0006796,GO:0006807,GO:0006915,GO:0006950,GO:0006979,GO:0006996,GO:0007030,GO:0007043,GO:0007154,GO:0007163,GO:0007165,GO:0007275,GO:0007346,GO:0007399,GO:0008144,GO:0008150,GO:0008152,GO:0008219,GO:0008349,GO:0008631,GO:0009267,GO:0009605,GO:0009636,GO:0009653,GO:0009887,GO:0009888,GO:0009892,GO:0009893,GO:0009898,GO:0009966,GO:0009967,GO:0009968,GO:0009987,GO:0009991,GO:0010035,GO:0010256,GO:0010421,GO:0010562,GO:0010563,GO:0010604,GO:0010605,GO:0010646,GO:0010647,GO:0010648,GO:0010720,GO:0010769,GO:0010770,GO:0010941,GO:0010975,GO:0010976,GO:0012501,GO:0012505,GO:0012506,GO:0016020,GO:0016043,GO:0016301,GO:0016310,GO:0016324,GO:0016740,GO:0016772,GO:0016773,GO:0017076,GO:0019220,GO:0019222,GO:0019538,GO:0019899,GO:0019900,GO:0019901,GO:0019991,GO:0022008,GO:0022603,GO:0022604,GO:0022607,GO:0023014,GO:0023051,GO:0023052,GO:0023056,GO:0023057,GO:0030030,GO:0030031,GO:0030033,GO:0030154,GO:0030182,GO:0030334,GO:0030336,GO:0030554,GO:0031090,GO:0031098,GO:0031175,GO:0031323,GO:0031324,GO:0031325,GO:0031344,GO:0031346,GO:0031399,GO:0031400,GO:0031401,GO:0031410,GO:0031667,GO:0031668,GO:0031669,GO:0031974,GO:0031981,GO:0031982,GO:0031984,GO:0032101,GO:0032103,GO:0032147,GO:0032268,GO:0032269,GO:0032270,GO:0032386,GO:0032388,GO:0032501,GO:0032502,GO:0032528,GO:0032553,GO:0032555,GO:0032559,GO:0032872,GO:0032874,GO:0032879,GO:0032989,GO:0032990,GO:0033043,GO:0033554,GO:0033673,GO:0033674,GO:0034329,GO:0034330,GO:0034599,GO:0034614,GO:0035239,GO:0035295,GO:0035556,GO:0035639,GO:0035690,GO:0036094,GO:0036211,GO:0036473,GO:0036474,GO:0036481,GO:0040012,GO:0040013,GO:0042221,GO:0042325,GO:0042326,GO:0042327,GO:0042493,GO:0042542,GO:0042594,GO:0042802,GO:0042803,GO:0042981,GO:0043066,GO:0043067,GO:0043069,GO:0043085,GO:0043086,GO:0043087,GO:0043167,GO:0043168,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043297,GO:0043405,GO:0043406,GO:0043407,GO:0043408,GO:0043409,GO:0043410,GO:0043412,GO:0043547,GO:0043549,GO:0043900,GO:0044085,GO:0044092,GO:0044093,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044431,GO:0044444,GO:0044446,GO:0044459,GO:0044464,GO:0045177,GO:0045216,GO:0045595,GO:0045597,GO:0045664,GO:0045666,GO:0045859,GO:0045860,GO:0045936,GO:0045937,GO:0046677,GO:0046777,GO:0046872,GO:0046983,GO:0048308,GO:0048313,GO:0048468,GO:0048471,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048585,GO:0048666,GO:0048679,GO:0048680,GO:0048699,GO:0048729,GO:0048731,GO:0048812,GO:0048856,GO:0048858,GO:0048869,GO:0050767,GO:0050769,GO:0050770,GO:0050772,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0050896,GO:0051019,GO:0051049,GO:0051050,GO:0051094,GO:0051128,GO:0051130,GO:0051171,GO:0051172,GO:0051173,GO:0051174,GO:0051179,GO:0051234,GO:0051239,GO:0051240,GO:0051246,GO:0051247,GO:0051248,GO:0051270,GO:0051271,GO:0051336,GO:0051338,GO:0051345,GO:0051347,GO:0051348,GO:0051640,GO:0051641,GO:0051645,GO:0051649,GO:0051656,GO:0051683,GO:0051716,GO:0051726,GO:0051960,GO:0051962,GO:0060255,GO:0060281,GO:0060284,GO:0060341,GO:0060429,GO:0060438,GO:0060439,GO:0060541,GO:0060548,GO:0060562,GO:0060627,GO:0065007,GO:0065009,GO:0070013,GO:0070301,GO:0070302,GO:0070304,GO:0070570,GO:0070572,GO:0070887,GO:0071236,GO:0071496,GO:0071704,GO:0071840,GO:0071900,GO:0071901,GO:0071902,GO:0071944,GO:0080090,GO:0080134,GO:0080135,GO:0090168,GO:0097159,GO:0097190,GO:0097193,GO:0097194,GO:0097237,GO:0097367,GO:0097468,GO:0097708,GO:0098552,GO:0098562,GO:0098588,GO:0098590,GO:0098592,GO:0098791,GO:0120031,GO:0120035,GO:0120036,GO:0120039,GO:0140096,GO:1900407,GO:1901031,GO:1901265,GO:1901363,GO:1901564,GO:1901700,GO:1901701,GO:1902531,GO:1902532,GO:1902533,GO:1902882,GO:1903034,GO:1903036,GO:1903201,GO:1903205,GO:1903358,GO:1905879,GO:2000026,GO:2000145,GO:2000146,GO:2000241,GO:2001023,GO:2001038,GO:2001135,GO:2001137
Evalue6.25e-101
EggNOG OGsKOG0201@1|root,KOG0201@2759|Eukaryota,38G1B@33154|Opisthokonta,3BA42@33208|Metazoa,3CTF2@33213|Bilateria,40BNW@6231|Nematoda,1KU1J@119089|Chromadorea
EC2.7.11.1
DescriptionProtein tyrosine kinase
COG categoryT
BRITEko00000,ko01000,ko01001,ko04131
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi6901Gvermi6901Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_24229 396212..397636 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6901.t1.stop1Gvermi6901.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_24229 396212..396214 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6901.t1.CDS1Gvermi6901.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24229 396212..397636 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6901.t1.exon1Gvermi6901.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24229 396212..397636 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6901.t1.start1Gvermi6901.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_24229 397634..397636 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6901.t1Gvermi6901.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_24229 396212..397636 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi6901.t1 ID=Gvermi6901.t1|Name=Gvermi6901.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=475bp
MADLFEKLECIGKGSFGEVFKGRELSSGKIVALKLVDLEKMDEEIDVIQR
EIEVMRQISNPYVVQYYTSLMEGSTLWIVMEYMSEGSLKELIDHVGPFPE
EAIATVMRALCRGLDYVHRGHKLHRDIKAANILLNDNGDVKLADFGVAGQ
MTTTVRQRNTFVGSPFWMAPEVVQKSLYNEKADIWSIGITGIELANGLPP
YATEHPFRALFLIPKNPPPRIEGVHFSRSFKEFIALCLKKDPAERPSAEQ
LLQHSFLRKARSGSIKELIRERQQISGEVEEKVYIGGDSITEFPDSSTSN
TLKEEQASESREKEWVFDFGSLNESTHDEESNTEADETAELQNSGPDSGN
SDQSSNSQRDCIPRPTCEASSKTNEETEVIETKNQASLSEILSELVLPVI
SRLRADEVTGGNHNNLLTSSLGALEVALVDVESARPGFSSVLLESLLKDT
LRSNLPEAASLVKRVLQQSRANGT*
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spliced messenger RNA

>Gvermi6901.t1 ID=Gvermi6901.t1|Name=Gvermi6901.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1425bp|location=Sequence derived from alignment at ScGOVlb_24229:396212..397636- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTGACCTGTTCGAGAAACTGGAATGCATTGGCAAGGGCTCCTTTGG
AGAGGTTTTCAAAGGCCGAGAGCTTTCTTCGGGCAAGATCGTAGCTCTCA
AGCTGGTCGACTTGGAAAAAATGGATGAAGAGATAGACGTTATTCAGCGC
GAGATCGAGGTCATGCGTCAAATATCAAATCCGTACGTCGTTCAATACTA
TACTTCCCTTATGGAGGGTTCGACGTTGTGGATTGTCATGGAGTACATGT
CCGAAGGCTCCTTGAAAGAACTTATAGACCACGTCGGTCCGTTTCCGGAG
GAGGCGATTGCTACCGTAATGAGGGCGCTTTGTCGAGGCTTGGATTATGT
TCACAGAGGACATAAGCTTCATCGCGATATCAAAGCTGCCAACATTTTGC
TCAATGACAACGGAGACGTCAAGCTTGCTGATTTTGGCGTGGCGGGGCAG
ATGACTACCACAGTACGACAACGGAACACTTTTGTTGGATCTCCATTTTG
GATGGCGCCCGAAGTTGTTCAAAAGAGTCTCTACAATGAAAAGGCAGATA
TCTGGTCCATTGGTATTACCGGTATTGAATTAGCGAACGGTTTACCGCCC
TACGCCACGGAGCATCCATTTCGAGCTTTGTTTTTGATTCCCAAGAACCC
ACCACCTCGAATAGAAGGCGTTCACTTCTCGAGGTCTTTCAAAGAGTTTA
TCGCTCTTTGTTTGAAGAAGGACCCTGCTGAACGACCGAGTGCTGAACAA
CTTTTGCAGCATTCATTCTTGCGAAAGGCTCGATCTGGCTCAATCAAGGA
ACTGATCCGTGAACGGCAGCAGATATCTGGGGAAGTCGAAGAGAAAGTGT
ACATTGGAGGAGATTCTATCACTGAATTTCCGGACTCATCAACGAGTAAT
ACGCTAAAAGAAGAGCAAGCGAGCGAAAGCAGAGAGAAAGAGTGGGTGTT
TGACTTTGGATCGCTTAACGAATCAACACATGATGAAGAATCAAACACTG
AAGCAGATGAAACAGCGGAGCTACAAAACAGTGGTCCTGATTCTGGAAAC
AGCGATCAGTCGTCAAATTCTCAGAGAGATTGCATACCAAGGCCTACTTG
TGAAGCATCAAGCAAGACAAACGAAGAGACGGAAGTAATAGAAACGAAGA
ATCAGGCATCCCTGAGCGAGATTCTTTCGGAACTCGTCCTTCCCGTCATT
TCACGGTTGAGAGCTGACGAAGTGACGGGCGGTAATCATAACAATCTTTT
AACATCAAGTCTCGGAGCGCTAGAAGTTGCCCTCGTGGACGTTGAAAGTG
CCAGACCTGGATTCTCAAGCGTGCTTTTGGAGTCTCTACTCAAAGATACT
TTGCGATCGAATTTGCCAGAGGCGGCATCGCTCGTGAAGCGAGTACTTCA
ACAGTCGCGAGCGAATGGAACATGA
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protein sequence of Gvermi6901.t1

>Gvermi6901.t1 ID=Gvermi6901.t1|Name=Gvermi6901.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=475bp
MADLFEKLECIGKGSFGEVFKGRELSSGKIVALKLVDLEKMDEEIDVIQR
EIEVMRQISNPYVVQYYTSLMEGSTLWIVMEYMSEGSLKELIDHVGPFPE
EAIATVMRALCRGLDYVHRGHKLHRDIKAANILLNDNGDVKLADFGVAGQ
MTTTVRQRNTFVGSPFWMAPEVVQKSLYNEKADIWSIGITGIELANGLPP
YATEHPFRALFLIPKNPPPRIEGVHFSRSFKEFIALCLKKDPAERPSAEQ
LLQHSFLRKARSGSIKELIRERQQISGEVEEKVYIGGDSITEFPDSSTSN
TLKEEQASESREKEWVFDFGSLNESTHDEESNTEADETAELQNSGPDSGN
SDQSSNSQRDCIPRPTCEASSKTNEETEVIETKNQASLSEILSELVLPVI
SRLRADEVTGGNHNNLLTSSLGALEVALVDVESARPGFSSVLLESLLKDT
LRSNLPEAASLVKRVLQQSRANGT*
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mRNA from alignment at ScGOVlb_24229:396212..397636-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi6901.t1 ID=Gvermi6901.t1|Name=Gvermi6901.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1425bp|location=Sequence derived from alignment at ScGOVlb_24229:396212..397636- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCTGACCTGTTCGAGAAACTGGAATGCATTGGCAAGGGCTCCTTTGG
AGAGGTTTTCAAAGGCCGAGAGCTTTCTTCGGGCAAGATCGTAGCTCTCA
AGCTGGTCGACTTGGAAAAAATGGATGAAGAGATAGACGTTATTCAGCGC
GAGATCGAGGTCATGCGTCAAATATCAAATCCGTACGTCGTTCAATACTA
TACTTCCCTTATGGAGGGTTCGACGTTGTGGATTGTCATGGAGTACATGT
CCGAAGGCTCCTTGAAAGAACTTATAGACCACGTCGGTCCGTTTCCGGAG
GAGGCGATTGCTACCGTAATGAGGGCGCTTTGTCGAGGCTTGGATTATGT
TCACAGAGGACATAAGCTTCATCGCGATATCAAAGCTGCCAACATTTTGC
TCAATGACAACGGAGACGTCAAGCTTGCTGATTTTGGCGTGGCGGGGCAG
ATGACTACCACAGTACGACAACGGAACACTTTTGTTGGATCTCCATTTTG
GATGGCGCCCGAAGTTGTTCAAAAGAGTCTCTACAATGAAAAGGCAGATA
TCTGGTCCATTGGTATTACCGGTATTGAATTAGCGAACGGTTTACCGCCC
TACGCCACGGAGCATCCATTTCGAGCTTTGTTTTTGATTCCCAAGAACCC
ACCACCTCGAATAGAAGGCGTTCACTTCTCGAGGTCTTTCAAAGAGTTTA
TCGCTCTTTGTTTGAAGAAGGACCCTGCTGAACGACCGAGTGCTGAACAA
CTTTTGCAGCATTCATTCTTGCGAAAGGCTCGATCTGGCTCAATCAAGGA
ACTGATCCGTGAACGGCAGCAGATATCTGGGGAAGTCGAAGAGAAAGTGT
ACATTGGAGGAGATTCTATCACTGAATTTCCGGACTCATCAACGAGTAAT
ACGCTAAAAGAAGAGCAAGCGAGCGAAAGCAGAGAGAAAGAGTGGGTGTT
TGACTTTGGATCGCTTAACGAATCAACACATGATGAAGAATCAAACACTG
AAGCAGATGAAACAGCGGAGCTACAAAACAGTGGTCCTGATTCTGGAAAC
AGCGATCAGTCGTCAAATTCTCAGAGAGATTGCATACCAAGGCCTACTTG
TGAAGCATCAAGCAAGACAAACGAAGAGACGGAAGTAATAGAAACGAAGA
ATCAGGCATCCCTGAGCGAGATTCTTTCGGAACTCGTCCTTCCCGTCATT
TCACGGTTGAGAGCTGACGAAGTGACGGGCGGTAATCATAACAATCTTTT
AACATCAAGTCTCGGAGCGCTAGAAGTTGCCCTCGTGGACGTTGAAAGTG
CCAGACCTGGATTCTCAAGCGTGCTTTTGGAGTCTCTACTCAAAGATACT
TTGCGATCGAATTTGCCAGAGGCGGCATCGCTCGTGAAGCGAGTACTTCA
ACAGTCGCGAGCGAATGGAACATGA
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Coding sequence (CDS) from alignment at ScGOVlb_24229:396212..397636-

>Gvermi6901.t1 ID=Gvermi6901.t1|Name=Gvermi6901.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1425bp|location=Sequence derived from alignment at ScGOVlb_24229:396212..397636- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCTGACCTGTTCGAGAAACTGGAATGCATTGGCAAGGGCTCCTTTGG
AGAGGTTTTCAAAGGCCGAGAGCTTTCTTCGGGCAAGATCGTAGCTCTCA
AGCTGGTCGACTTGGAAAAAATGGATGAAGAGATAGACGTTATTCAGCGC
GAGATCGAGGTCATGCGTCAAATATCAAATCCGTACGTCGTTCAATACTA
TACTTCCCTTATGGAGGGTTCGACGTTGTGGATTGTCATGGAGTACATGT
CCGAAGGCTCCTTGAAAGAACTTATAGACCACGTCGGTCCGTTTCCGGAG
GAGGCGATTGCTACCGTAATGAGGGCGCTTTGTCGAGGCTTGGATTATGT
TCACAGAGGACATAAGCTTCATCGCGATATCAAAGCTGCCAACATTTTGC
TCAATGACAACGGAGACGTCAAGCTTGCTGATTTTGGCGTGGCGGGGCAG
ATGACTACCACAGTACGACAACGGAACACTTTTGTTGGATCTCCATTTTG
GATGGCGCCCGAAGTTGTTCAAAAGAGTCTCTACAATGAAAAGGCAGATA
TCTGGTCCATTGGTATTACCGGTATTGAATTAGCGAACGGTTTACCGCCC
TACGCCACGGAGCATCCATTTCGAGCTTTGTTTTTGATTCCCAAGAACCC
ACCACCTCGAATAGAAGGCGTTCACTTCTCGAGGTCTTTCAAAGAGTTTA
TCGCTCTTTGTTTGAAGAAGGACCCTGCTGAACGACCGAGTGCTGAACAA
CTTTTGCAGCATTCATTCTTGCGAAAGGCTCGATCTGGCTCAATCAAGGA
ACTGATCCGTGAACGGCAGCAGATATCTGGGGAAGTCGAAGAGAAAGTGT
ACATTGGAGGAGATTCTATCACTGAATTTCCGGACTCATCAACGAGTAAT
ACGCTAAAAGAAGAGCAAGCGAGCGAAAGCAGAGAGAAAGAGTGGGTGTT
TGACTTTGGATCGCTTAACGAATCAACACATGATGAAGAATCAAACACTG
AAGCAGATGAAACAGCGGAGCTACAAAACAGTGGTCCTGATTCTGGAAAC
AGCGATCAGTCGTCAAATTCTCAGAGAGATTGCATACCAAGGCCTACTTG
TGAAGCATCAAGCAAGACAAACGAAGAGACGGAAGTAATAGAAACGAAGA
ATCAGGCATCCCTGAGCGAGATTCTTTCGGAACTCGTCCTTCCCGTCATT
TCACGGTTGAGAGCTGACGAAGTGACGGGCGGTAATCATAACAATCTTTT
AACATCAAGTCTCGGAGCGCTAGAAGTTGCCCTCGTGGACGTTGAAAGTG
CCAGACCTGGATTCTCAAGCGTGCTTTTGGAGTCTCTACTCAAAGATACT
TTGCGATCGAATTTGCCAGAGGCGGCATCGCTCGTGAAGCGAGTACTTCA
ACAGTCGCGAGCGAATGGAACATGA
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