Gvermi6898.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi6898.t1
Unique NameGvermi6898.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length257
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24229contigScGOVlb_24229:389408..390321 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi6898Gvermi6898Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_24229 389408..390321 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6898.t1Gvermi6898.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_24229 389408..390321 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6898.t1.stop1Gvermi6898.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_24229 389408..389410 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6898.t1.CDS1Gvermi6898.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24229 389408..389793 -
Gvermi6898.t1.CDS2Gvermi6898.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24229 389937..390321 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6898.t1.exon1Gvermi6898.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24229 389408..389793 -
Gvermi6898.t1.exon2Gvermi6898.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24229 389937..390321 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6898.t1.intron1Gvermi6898.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_24229 389794..389936 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6898.t1.start1Gvermi6898.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_24229 390319..390321 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi6898.t1 ID=Gvermi6898.t1|Name=Gvermi6898.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=257bp
MEVVVATSILSQVAVFVINRFTSKYDVVARSRESDTLHQAPTNSQPQPQP
RLIHVADQQNHQNNTEQSPDESSKPEAESDENSIEFLEHRLKHLKTQAKR
LNAPDTLVQYARVTREANKVEKALNEKKAEQRINAAEPLARDAVTGALTK
LMKPHVGAVRYGVANQIIRAAPRVISFVFLWYYFSWREGSANQGIAMTVD
CQALRPISFLFRKLPPSCLDDDWLCVVQASQAPQCVISYSWALILCNIVI
STLLQA*
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spliced messenger RNA

>Gvermi6898.t1 ID=Gvermi6898.t1|Name=Gvermi6898.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=771bp|location=Sequence derived from alignment at ScGOVlb_24229:389408..390321- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGGTTGTTGTTGCAACCAGTATTCTATCACAGGTCGCCGTCTTCGT
TATCAATAGATTCACATCTAAATACGACGTTGTCGCTCGATCGAGAGAGT
CAGATACCCTCCATCAAGCCCCCACTAATTCGCAGCCACAACCGCAGCCC
CGGCTCATTCATGTCGCAGACCAGCAAAACCACCAAAACAATACCGAACA
GAGCCCTGATGAAAGCTCTAAACCAGAAGCGGAATCCGACGAGAATAGCA
TTGAATTTCTGGAGCATCGCCTCAAACACCTGAAAACCCAAGCAAAACGG
CTTAATGCTCCTGACACGCTCGTTCAATACGCTCGTGTCACTCGAGAGGC
AAACAAGGTTGAAAAGGCTCTCAACGAAAAGAAAGCTGAACAGAGAATAA
ACGCTGCAGAGCCTCTAGCAAGAGACGCCGTCACAGGCGCATTGACAAAA
CTGATGAAACCTCACGTGGGAGCTGTGCGGTACGGGGTTGCAAATCAGAT
CATTCGAGCTGCACCGAGAGTCATATCCTTCGTGTTTCTGTGGTACTACT
TTTCATGGCGGGAAGGTTCCGCAAACCAAGGAATAGCCATGACCGTTGAC
TGCCAAGCCCTTAGACCGATATCCTTTCTTTTTCGAAAGCTGCCGCCCTC
CTGTTTGGACGATGACTGGCTGTGTGTAGTTCAGGCCTCCCAAGCGCCTC
AATGCGTAATTTCTTATTCGTGGGCGCTCATCTTGTGCAATATAGTTATT
TCCACCCTTTTGCAGGCGTGA
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protein sequence of Gvermi6898.t1

>Gvermi6898.t1 ID=Gvermi6898.t1|Name=Gvermi6898.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=257bp
MEVVVATSILSQVAVFVINRFTSKYDVVARSRESDTLHQAPTNSQPQPQP
RLIHVADQQNHQNNTEQSPDESSKPEAESDENSIEFLEHRLKHLKTQAKR
LNAPDTLVQYARVTREANKVEKALNEKKAEQRINAAEPLARDAVTGALTK
LMKPHVGAVRYGVANQIIRAAPRVISFVFLWYYFSWREGSANQGIAMTVD
CQALRPISFLFRKLPPSCLDDDWLCVVQASQAPQCVISYSWALILCNIVI
STLLQA*
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mRNA from alignment at ScGOVlb_24229:389408..390321-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi6898.t1 ID=Gvermi6898.t1|Name=Gvermi6898.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=914bp|location=Sequence derived from alignment at ScGOVlb_24229:389408..390321- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGAGGTTGTTGTTGCAACCAGTATTCTATCACAGGTCGCCGTCTTCGT
TATCAATAGATTCACATCTAAATACGACGTTGTCGCTCGATCGAGAGAGT
CAGATACCCTCCATCAAGCCCCCACTAATTCGCAGCCACAACCGCAGCCC
CGGCTCATTCATGTCGCAGACCAGCAAAACCACCAAAACAATACCGAACA
GAGCCCTGATGAAAGCTCTAAACCAGAAGCGGAATCCGACGAGAATAGCA
TTGAATTTCTGGAGCATCGCCTCAAACACCTGAAAACCCAAGCAAAACGG
CTTAATGCTCCTGACACGCTCGTTCAATACGCTCGTGTCACTCGAGAGGC
AAACAAGGTTGAAAAGGCTCTCAACGAAAAGAAAGGTACGGAATCTTTAA
TCAAGACAATTTCGCTACACTATACCTCCCCCATTCCCCCCCCCCCCCCC
CCCTCCCCGAGCATATATTACAGAACAAAGAGCTGACCATGAATGACTCA
CTTTTCCGCTTATATCTGGACTGCACAGCTGAACAGAGAATAAACGCTGC
AGAGCCTCTAGCAAGAGACGCCGTCACAGGCGCATTGACAAAACTGATGA
AACCTCACGTGGGAGCTGTGCGGTACGGGGTTGCAAATCAGATCATTCGA
GCTGCACCGAGAGTCATATCCTTCGTGTTTCTGTGGTACTACTTTTCATG
GCGGGAAGGTTCCGCAAACCAAGGAATAGCCATGACCGTTGACTGCCAAG
CCCTTAGACCGATATCCTTTCTTTTTCGAAAGCTGCCGCCCTCCTGTTTG
GACGATGACTGGCTGTGTGTAGTTCAGGCCTCCCAAGCGCCTCAATGCGT
AATTTCTTATTCGTGGGCGCTCATCTTGTGCAATATAGTTATTTCCACCC
TTTTGCAGGCGTGA
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Coding sequence (CDS) from alignment at ScGOVlb_24229:389408..390321-

>Gvermi6898.t1 ID=Gvermi6898.t1|Name=Gvermi6898.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=771bp|location=Sequence derived from alignment at ScGOVlb_24229:389408..390321- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGAGGTTGTTGTTGCAACCAGTATTCTATCACAGGTCGCCGTCTTCGT
TATCAATAGATTCACATCTAAATACGACGTTGTCGCTCGATCGAGAGAGT
CAGATACCCTCCATCAAGCCCCCACTAATTCGCAGCCACAACCGCAGCCC
CGGCTCATTCATGTCGCAGACCAGCAAAACCACCAAAACAATACCGAACA
GAGCCCTGATGAAAGCTCTAAACCAGAAGCGGAATCCGACGAGAATAGCA
TTGAATTTCTGGAGCATCGCCTCAAACACCTGAAAACCCAAGCAAAACGG
CTTAATGCTCCTGACACGCTCGTTCAATACGCTCGTGTCACTCGAGAGGC
AAACAAGGTTGAAAAGGCTCTCAACGAAAAGAAAGCTGAACAGAGAATAA
ACGCTGCAGAGCCTCTAGCAAGAGACGCCGTCACAGGCGCATTGACAAAA
CTGATGAAACCTCACGTGGGAGCTGTGCGGTACGGGGTTGCAAATCAGAT
CATTCGAGCTGCACCGAGAGTCATATCCTTCGTGTTTCTGTGGTACTACT
TTTCATGGCGGGAAGGTTCCGCAAACCAAGGAATAGCCATGACCGTTGAC
TGCCAAGCCCTTAGACCGATATCCTTTCTTTTTCGAAAGCTGCCGCCCTC
CTGTTTGGACGATGACTGGCTGTGTGTAGTTCAGGCCTCCCAAGCGCCTC
AATGCGTAATTTCTTATTCGTGGGCGCTCATCTTGTGCAATATAGTTATT
TCCACCCTTTTGCAGGCGTGA
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