Gvermi6894.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi6894.t1
Unique NameGvermi6894.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length202
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24229contigScGOVlb_24229:380874..381659 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog31234.CRE02155
Preferred nameTMEM66
PFAMsSARAF
Max annot lvl33208|Metazoa
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0008150,GO:0010959,GO:0012505,GO:0016020,GO:0016021,GO:0030176,GO:0031224,GO:0031227,GO:0031984,GO:0032879,GO:0042175,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043269,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0050789,GO:0051049,GO:0051924,GO:0065007,GO:0098827,GO:2001256
Evalue2.09e-20
EggNOG OGs28KQW@1|root,2QT6Y@2759|Eukaryota,38PN7@33154|Opisthokonta,3BDYH@33208|Metazoa,3CSU9@33213|Bilateria,40DMB@6231|Nematoda,1KW8A@119089|Chromadorea,4104A@6236|Rhabditida
DescriptionSOCE-associated regulatory factor of calcium homoeostasis
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi6894Gvermi6894Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_24229 380874..381659 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6894.t1Gvermi6894.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_24229 380874..381659 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6894.t1.stop1Gvermi6894.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_24229 380874..380876 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6894.t1.CDS1Gvermi6894.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24229 380874..380925 -
Gvermi6894.t1.CDS2Gvermi6894.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24229 381006..381069 -
Gvermi6894.t1.CDS3Gvermi6894.t1.CDS3Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24229 381170..381659 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6894.t1.exon1Gvermi6894.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24229 380874..380925 -
Gvermi6894.t1.exon2Gvermi6894.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24229 381006..381069 -
Gvermi6894.t1.exon3Gvermi6894.t1.exon3Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24229 381170..381659 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6894.t1.intron1Gvermi6894.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_24229 380926..381005 -
Gvermi6894.t1.intron2Gvermi6894.t1.intron2Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_24229 381070..381169 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6894.t1.start1Gvermi6894.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_24229 381657..381659 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi6894.t1 ID=Gvermi6894.t1|Name=Gvermi6894.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=202bp
MKSSLVTVSLLALLAASQAVPNGTRAVTGAGTDSSSSGSTNDRVLLRSIT
ALIFSENGRARSRYGAGEQQLQCVGGSASGLWWFTEYYPHAVQCQNIGWD
GASIQWSCEGHLSDQVEFGPDTAVTCEPYDEDQDDGYILRGSCRLEYTIN
FRKFHITFVHIIYNCVLILGLLWCYYQSRWWMKKRLRHKQKKRERRAQQS
S*
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spliced messenger RNA

>Gvermi6894.t1 ID=Gvermi6894.t1|Name=Gvermi6894.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=606bp|location=Sequence derived from alignment at ScGOVlb_24229:380874..381659- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAATCGAGCTTGGTTACCGTTTCACTCCTCGCCCTTCTTGCCGCCTC
CCAGGCAGTCCCGAACGGTACCAGGGCTGTGACGGGCGCCGGGACTGATT
CGTCTTCGTCCGGTTCCACCAATGACCGCGTGCTCTTGCGATCCATCACT
GCCTTGATTTTCTCCGAGAACGGTAGAGCTCGCTCGAGATACGGAGCCGG
CGAGCAGCAGCTGCAGTGCGTTGGAGGTTCCGCTTCTGGCTTGTGGTGGT
TCACCGAGTACTATCCGCACGCTGTGCAATGCCAGAACATAGGCTGGGAC
GGCGCCAGCATTCAGTGGTCTTGCGAAGGCCACCTGAGTGACCAAGTTGA
GTTTGGTCCAGACACTGCCGTCACTTGTGAGCCCTACGACGAGGACCAGG
ATGATGGCTATATCTTGAGAGGTTCTTGTCGCCTGGAATACACCATCAAT
TTCAGGAAGTTCCACATCACCTTCGTCCATATCATATACAACTGCGTACT
TATTCTAGGGTTGTTATGGTGCTATTACCAGAGTCGGTGGTGGATGAAGA
AGCGTCTCAGACACAAACAAAAGAAACGTGAGCGCCGTGCTCAGCAATCA
TCGTAG
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protein sequence of Gvermi6894.t1

>Gvermi6894.t1 ID=Gvermi6894.t1|Name=Gvermi6894.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=202bp
MKSSLVTVSLLALLAASQAVPNGTRAVTGAGTDSSSSGSTNDRVLLRSIT
ALIFSENGRARSRYGAGEQQLQCVGGSASGLWWFTEYYPHAVQCQNIGWD
GASIQWSCEGHLSDQVEFGPDTAVTCEPYDEDQDDGYILRGSCRLEYTIN
FRKFHITFVHIIYNCVLILGLLWCYYQSRWWMKKRLRHKQKKRERRAQQS
S*
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mRNA from alignment at ScGOVlb_24229:380874..381659-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi6894.t1 ID=Gvermi6894.t1|Name=Gvermi6894.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=786bp|location=Sequence derived from alignment at ScGOVlb_24229:380874..381659- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAAATCGAGCTTGGTTACCGTTTCACTCCTCGCCCTTCTTGCCGCCTC
CCAGGCAGTCCCGAACGGTACCAGGGCTGTGACGGGCGCCGGGACTGATT
CGTCTTCGTCCGGTTCCACCAATGACCGCGTGCTCTTGCGATCCATCACT
GCCTTGATTTTCTCCGAGAACGGTAGAGCTCGCTCGAGATACGGAGCCGG
CGAGCAGCAGCTGCAGTGCGTTGGAGGTTCCGCTTCTGGCTTGTGGTGGT
TCACCGAGTACTATCCGCACGCTGTGCAATGCCAGAACATAGGCTGGGAC
GGCGCCAGCATTCAGTGGTCTTGCGAAGGCCACCTGAGTGACCAAGTTGA
GTTTGGTCCAGACACTGCCGTCACTTGTGAGCCCTACGACGAGGACCAGG
ATGATGGCTATATCTTGAGAGGTTCTTGTCGCCTGGAATACACCATCAAT
TTCAGGAAGTTCCACATCACCTTCGTCCATATCATATACAGTGCGTTATA
TACATGCCTTGCTATTCTTCACTCCTCGAGCTATTCCGCAAAAAGTTTCT
GACCAGTCCGTAATTCCTGTCCCATTTTTATGTATCTCAGACTGCGTACT
TATTCTAGGGTTGTTATGGTGCTATTACCAGAGTCGGTGGTGGATGAAGA
AGCGGTAAGTTCTGGTTTCAAATAACTTTCTGTTATTCAGTGAATTGACC
ACATCCACGTTGCGTTTTCATTTGCGAAAATAAGTCTCAGACACAAACAA
AAGAAACGTGAGCGCCGTGCTCAGCAATCATCGTAG
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Coding sequence (CDS) from alignment at ScGOVlb_24229:380874..381659-

>Gvermi6894.t1 ID=Gvermi6894.t1|Name=Gvermi6894.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=606bp|location=Sequence derived from alignment at ScGOVlb_24229:380874..381659- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAAATCGAGCTTGGTTACCGTTTCACTCCTCGCCCTTCTTGCCGCCTC
CCAGGCAGTCCCGAACGGTACCAGGGCTGTGACGGGCGCCGGGACTGATT
CGTCTTCGTCCGGTTCCACCAATGACCGCGTGCTCTTGCGATCCATCACT
GCCTTGATTTTCTCCGAGAACGGTAGAGCTCGCTCGAGATACGGAGCCGG
CGAGCAGCAGCTGCAGTGCGTTGGAGGTTCCGCTTCTGGCTTGTGGTGGT
TCACCGAGTACTATCCGCACGCTGTGCAATGCCAGAACATAGGCTGGGAC
GGCGCCAGCATTCAGTGGTCTTGCGAAGGCCACCTGAGTGACCAAGTTGA
GTTTGGTCCAGACACTGCCGTCACTTGTGAGCCCTACGACGAGGACCAGG
ATGATGGCTATATCTTGAGAGGTTCTTGTCGCCTGGAATACACCATCAAT
TTCAGGAAGTTCCACATCACCTTCGTCCATATCATATACAACTGCGTACT
TATTCTAGGGTTGTTATGGTGCTATTACCAGAGTCGGTGGTGGATGAAGA
AGCGTCTCAGACACAAACAAAAGAAACGTGAGCGCCGTGCTCAGCAATCA
TCGTAG
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