Gvermi6888.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi6888.t1
Unique NameGvermi6888.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length536
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24229contigScGOVlb_24229:363872..365479 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog15368.BRADI4G11310.1
PFAMsKelch_1,Kelch_4,Kelch_5
Max annot lvl35493|Streptophyta
Evalue4.21e-10
EggNOG OGsKOG0379@1|root,KOG0379@2759|Eukaryota,37QGY@33090|Viridiplantae,3GBRG@35493|Streptophyta,3KSNB@4447|Liliopsida,3I6RD@38820|Poales
DescriptionGalactose oxidase, central domain
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi6888Gvermi6888Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_24229 363872..365479 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6888.t1.stop1Gvermi6888.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_24229 363872..363874 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6888.t1.CDS1Gvermi6888.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24229 363872..365479 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6888.t1.exon1Gvermi6888.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24229 363872..365479 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6888.t1.start1Gvermi6888.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_24229 365477..365479 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6888.t1Gvermi6888.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_24229 363872..365479 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi6888.t1 ID=Gvermi6888.t1|Name=Gvermi6888.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=536bp
MEWLGDFTPRESSPSPRKGHTLTNLLDTPIILLFAGEDEAGVLLDDMYAL
HIERREWKRVTYAPGPKPPPRLLHTAVAVSSTLLVVIGGDTWNATEVTES
EQTNATALNDIWVFDYSNGSWQEIKDTGSVKLPCLSCSSAVFGRAKSQVP
GVYIFGGYSREKTNLNVVYRLRINDWKLEILPHVENDSNGRKRVINSNED
LKSSGVLNQLKNCKKSEDSKISETPDSRVLPKERESHGAIWLPGTGMLVV
GGDGGSSILGDSWLFLQHADDPESWKWQELRLIPTGNRAGNRLPRLAGHS
LIALPTNTVKVMVWGGILNSGEEVMGSDVSYVIDVEKANVAQSIRVTNTG
RTPRAGRILHGLVRARDKLFAFGGCDSDGKSHIGVQYGRLLPNFKALNQA
ASYFGSEAAAMAMHGAQLEKRNLDEEKPLQGWSARNPSNNVARTPLTGKV
SEVMDIGLLVSIEIDGKSFKGVLVASGTDDEEMADVSDEIKQANKGYNSG
ETKPGKRPKLHAAAEALPDSPPKVRPSRNEVFLLE*
back to top

spliced messenger RNA

>Gvermi6888.t1 ID=Gvermi6888.t1|Name=Gvermi6888.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1608bp|location=Sequence derived from alignment at ScGOVlb_24229:363872..365479- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGTGGCTTGGTGACTTTACTCCGAGAGAAAGCTCCCCATCTCCTAG
GAAAGGGCACACATTGACCAATCTGCTGGACACTCCGATTATACTTTTGT
TTGCTGGAGAAGATGAGGCGGGCGTACTGCTTGACGATATGTACGCACTT
CACATAGAACGACGTGAATGGAAGCGTGTGACCTACGCGCCAGGCCCCAA
GCCCCCTCCAAGATTATTGCACACGGCTGTTGCAGTATCGTCTACATTGC
TTGTAGTTATAGGAGGTGATACATGGAATGCCACAGAAGTGACAGAGTCA
GAACAGACAAATGCCACTGCTCTGAATGATATATGGGTTTTTGACTACAG
CAATGGCTCATGGCAAGAAATCAAAGACACGGGCTCGGTGAAATTGCCTT
GTCTCAGTTGCTCCTCCGCTGTATTTGGGCGTGCGAAAAGTCAAGTTCCG
GGTGTTTACATTTTTGGCGGTTACAGCCGAGAGAAAACGAATCTTAATGT
CGTGTACCGTTTGAGAATCAACGATTGGAAGCTCGAAATCCTGCCGCACG
TAGAGAATGATTCCAACGGAAGAAAGAGGGTAATAAACAGCAATGAAGAT
TTAAAGAGTAGCGGAGTGTTAAACCAACTGAAGAACTGCAAGAAAAGTGA
GGATTCAAAGATATCTGAGACGCCTGATAGTCGAGTACTTCCGAAGGAAC
GAGAGTCTCACGGGGCGATATGGCTCCCAGGAACCGGCATGCTGGTCGTT
GGAGGGGACGGGGGATCATCCATTCTGGGAGACTCTTGGTTGTTTTTGCA
ACATGCAGATGACCCCGAATCTTGGAAATGGCAAGAGCTGCGTCTTATTC
CCACGGGGAATCGGGCAGGAAATAGGCTTCCTCGGTTGGCGGGACATTCT
CTAATTGCTTTACCAACTAACACAGTGAAGGTGATGGTTTGGGGTGGAAT
TCTAAACAGCGGTGAAGAAGTTATGGGATCTGATGTGTCTTACGTCATTG
ACGTTGAGAAAGCAAACGTTGCGCAAAGTATTCGAGTAACAAATACTGGA
AGGACGCCAAGGGCTGGAAGAATACTTCATGGACTTGTTCGAGCGAGGGA
CAAGCTGTTTGCGTTCGGTGGCTGCGATTCGGACGGAAAAAGTCACATTG
GAGTGCAGTACGGGCGACTGTTGCCGAACTTCAAGGCACTAAACCAAGCC
GCGAGCTACTTTGGATCAGAGGCCGCGGCAATGGCAATGCATGGCGCGCA
GCTCGAGAAAAGAAATTTGGATGAGGAGAAGCCATTACAAGGTTGGAGCG
CTAGGAATCCAAGTAATAATGTGGCTCGCACACCCTTGACAGGTAAAGTT
TCGGAAGTGATGGATATAGGGCTGTTAGTGTCGATTGAAATCGATGGAAA
GTCATTCAAGGGAGTTCTTGTTGCCAGTGGAACAGATGATGAAGAGATGG
CTGACGTTTCTGATGAAATCAAACAAGCTAACAAAGGATATAACAGCGGC
GAGACGAAGCCCGGCAAACGACCAAAACTACATGCTGCCGCAGAAGCTCT
ACCTGACTCTCCACCGAAAGTGAGACCCAGCCGAAATGAAGTATTTCTTC
TAGAGTAA
back to top

protein sequence of Gvermi6888.t1

>Gvermi6888.t1 ID=Gvermi6888.t1|Name=Gvermi6888.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=536bp
MEWLGDFTPRESSPSPRKGHTLTNLLDTPIILLFAGEDEAGVLLDDMYAL
HIERREWKRVTYAPGPKPPPRLLHTAVAVSSTLLVVIGGDTWNATEVTES
EQTNATALNDIWVFDYSNGSWQEIKDTGSVKLPCLSCSSAVFGRAKSQVP
GVYIFGGYSREKTNLNVVYRLRINDWKLEILPHVENDSNGRKRVINSNED
LKSSGVLNQLKNCKKSEDSKISETPDSRVLPKERESHGAIWLPGTGMLVV
GGDGGSSILGDSWLFLQHADDPESWKWQELRLIPTGNRAGNRLPRLAGHS
LIALPTNTVKVMVWGGILNSGEEVMGSDVSYVIDVEKANVAQSIRVTNTG
RTPRAGRILHGLVRARDKLFAFGGCDSDGKSHIGVQYGRLLPNFKALNQA
ASYFGSEAAAMAMHGAQLEKRNLDEEKPLQGWSARNPSNNVARTPLTGKV
SEVMDIGLLVSIEIDGKSFKGVLVASGTDDEEMADVSDEIKQANKGYNSG
ETKPGKRPKLHAAAEALPDSPPKVRPSRNEVFLLE*
back to top

mRNA from alignment at ScGOVlb_24229:363872..365479-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi6888.t1 ID=Gvermi6888.t1|Name=Gvermi6888.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1608bp|location=Sequence derived from alignment at ScGOVlb_24229:363872..365479- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGAGTGGCTTGGTGACTTTACTCCGAGAGAAAGCTCCCCATCTCCTAG
GAAAGGGCACACATTGACCAATCTGCTGGACACTCCGATTATACTTTTGT
TTGCTGGAGAAGATGAGGCGGGCGTACTGCTTGACGATATGTACGCACTT
CACATAGAACGACGTGAATGGAAGCGTGTGACCTACGCGCCAGGCCCCAA
GCCCCCTCCAAGATTATTGCACACGGCTGTTGCAGTATCGTCTACATTGC
TTGTAGTTATAGGAGGTGATACATGGAATGCCACAGAAGTGACAGAGTCA
GAACAGACAAATGCCACTGCTCTGAATGATATATGGGTTTTTGACTACAG
CAATGGCTCATGGCAAGAAATCAAAGACACGGGCTCGGTGAAATTGCCTT
GTCTCAGTTGCTCCTCCGCTGTATTTGGGCGTGCGAAAAGTCAAGTTCCG
GGTGTTTACATTTTTGGCGGTTACAGCCGAGAGAAAACGAATCTTAATGT
CGTGTACCGTTTGAGAATCAACGATTGGAAGCTCGAAATCCTGCCGCACG
TAGAGAATGATTCCAACGGAAGAAAGAGGGTAATAAACAGCAATGAAGAT
TTAAAGAGTAGCGGAGTGTTAAACCAACTGAAGAACTGCAAGAAAAGTGA
GGATTCAAAGATATCTGAGACGCCTGATAGTCGAGTACTTCCGAAGGAAC
GAGAGTCTCACGGGGCGATATGGCTCCCAGGAACCGGCATGCTGGTCGTT
GGAGGGGACGGGGGATCATCCATTCTGGGAGACTCTTGGTTGTTTTTGCA
ACATGCAGATGACCCCGAATCTTGGAAATGGCAAGAGCTGCGTCTTATTC
CCACGGGGAATCGGGCAGGAAATAGGCTTCCTCGGTTGGCGGGACATTCT
CTAATTGCTTTACCAACTAACACAGTGAAGGTGATGGTTTGGGGTGGAAT
TCTAAACAGCGGTGAAGAAGTTATGGGATCTGATGTGTCTTACGTCATTG
ACGTTGAGAAAGCAAACGTTGCGCAAAGTATTCGAGTAACAAATACTGGA
AGGACGCCAAGGGCTGGAAGAATACTTCATGGACTTGTTCGAGCGAGGGA
CAAGCTGTTTGCGTTCGGTGGCTGCGATTCGGACGGAAAAAGTCACATTG
GAGTGCAGTACGGGCGACTGTTGCCGAACTTCAAGGCACTAAACCAAGCC
GCGAGCTACTTTGGATCAGAGGCCGCGGCAATGGCAATGCATGGCGCGCA
GCTCGAGAAAAGAAATTTGGATGAGGAGAAGCCATTACAAGGTTGGAGCG
CTAGGAATCCAAGTAATAATGTGGCTCGCACACCCTTGACAGGTAAAGTT
TCGGAAGTGATGGATATAGGGCTGTTAGTGTCGATTGAAATCGATGGAAA
GTCATTCAAGGGAGTTCTTGTTGCCAGTGGAACAGATGATGAAGAGATGG
CTGACGTTTCTGATGAAATCAAACAAGCTAACAAAGGATATAACAGCGGC
GAGACGAAGCCCGGCAAACGACCAAAACTACATGCTGCCGCAGAAGCTCT
ACCTGACTCTCCACCGAAAGTGAGACCCAGCCGAAATGAAGTATTTCTTC
TAGAGTAA
back to top

Coding sequence (CDS) from alignment at ScGOVlb_24229:363872..365479-

>Gvermi6888.t1 ID=Gvermi6888.t1|Name=Gvermi6888.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1608bp|location=Sequence derived from alignment at ScGOVlb_24229:363872..365479- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGAGTGGCTTGGTGACTTTACTCCGAGAGAAAGCTCCCCATCTCCTAG
GAAAGGGCACACATTGACCAATCTGCTGGACACTCCGATTATACTTTTGT
TTGCTGGAGAAGATGAGGCGGGCGTACTGCTTGACGATATGTACGCACTT
CACATAGAACGACGTGAATGGAAGCGTGTGACCTACGCGCCAGGCCCCAA
GCCCCCTCCAAGATTATTGCACACGGCTGTTGCAGTATCGTCTACATTGC
TTGTAGTTATAGGAGGTGATACATGGAATGCCACAGAAGTGACAGAGTCA
GAACAGACAAATGCCACTGCTCTGAATGATATATGGGTTTTTGACTACAG
CAATGGCTCATGGCAAGAAATCAAAGACACGGGCTCGGTGAAATTGCCTT
GTCTCAGTTGCTCCTCCGCTGTATTTGGGCGTGCGAAAAGTCAAGTTCCG
GGTGTTTACATTTTTGGCGGTTACAGCCGAGAGAAAACGAATCTTAATGT
CGTGTACCGTTTGAGAATCAACGATTGGAAGCTCGAAATCCTGCCGCACG
TAGAGAATGATTCCAACGGAAGAAAGAGGGTAATAAACAGCAATGAAGAT
TTAAAGAGTAGCGGAGTGTTAAACCAACTGAAGAACTGCAAGAAAAGTGA
GGATTCAAAGATATCTGAGACGCCTGATAGTCGAGTACTTCCGAAGGAAC
GAGAGTCTCACGGGGCGATATGGCTCCCAGGAACCGGCATGCTGGTCGTT
GGAGGGGACGGGGGATCATCCATTCTGGGAGACTCTTGGTTGTTTTTGCA
ACATGCAGATGACCCCGAATCTTGGAAATGGCAAGAGCTGCGTCTTATTC
CCACGGGGAATCGGGCAGGAAATAGGCTTCCTCGGTTGGCGGGACATTCT
CTAATTGCTTTACCAACTAACACAGTGAAGGTGATGGTTTGGGGTGGAAT
TCTAAACAGCGGTGAAGAAGTTATGGGATCTGATGTGTCTTACGTCATTG
ACGTTGAGAAAGCAAACGTTGCGCAAAGTATTCGAGTAACAAATACTGGA
AGGACGCCAAGGGCTGGAAGAATACTTCATGGACTTGTTCGAGCGAGGGA
CAAGCTGTTTGCGTTCGGTGGCTGCGATTCGGACGGAAAAAGTCACATTG
GAGTGCAGTACGGGCGACTGTTGCCGAACTTCAAGGCACTAAACCAAGCC
GCGAGCTACTTTGGATCAGAGGCCGCGGCAATGGCAATGCATGGCGCGCA
GCTCGAGAAAAGAAATTTGGATGAGGAGAAGCCATTACAAGGTTGGAGCG
CTAGGAATCCAAGTAATAATGTGGCTCGCACACCCTTGACAGGTAAAGTT
TCGGAAGTGATGGATATAGGGCTGTTAGTGTCGATTGAAATCGATGGAAA
GTCATTCAAGGGAGTTCTTGTTGCCAGTGGAACAGATGATGAAGAGATGG
CTGACGTTTCTGATGAAATCAAACAAGCTAACAAAGGATATAACAGCGGC
GAGACGAAGCCCGGCAAACGACCAAAACTACATGCTGCCGCAGAAGCTCT
ACCTGACTCTCCACCGAAAGTGAGACCCAGCCGAAATGAAGTATTTCTTC
TAGAGTAA
back to top