Gvermi6883.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi6883.t1
Unique Name	Gvermi6883.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	589

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_24229	contig	ScGOVlb_24229:351789..353555 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	88036.EFJ07828
PFAMs	Ground-like,Hint,Kelch_4
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K06224,ko:K11990,ko:K16669
KEGG Pathway	ko04340,ko04341,ko04391,ko04392,map04340,map04341,map04391,map04392
KEGG Module	M00678
GOs	GO:0003002,GO:0003674,GO:0003824,GO:0004175,GO:0005102,GO:0005488,GO:0005496,GO:0005515,GO:0005575,GO:0005576,GO:0005623,GO:0005886,GO:0006508,GO:0006807,GO:0007154,GO:0007267,GO:0007275,GO:0007350,GO:0007365,GO:0007367,GO:0007389,GO:0008150,GO:0008152,GO:0008233,GO:0008289,GO:0009790,GO:0009880,GO:0009987,GO:0010467,GO:0015485,GO:0016020,GO:0016485,GO:0016540,GO:0016787,GO:0019538,GO:0023052,GO:0032501,GO:0032502,GO:0032934,GO:0035282,GO:0036094,GO:0043170,GO:0043178,GO:0044238,GO:0044464,GO:0048856,GO:0051604,GO:0070011,GO:0071704,GO:0071944,GO:0097159,GO:0140096,GO:1901564
Evalue	1.03e-13
EggNOG OGs	KOG3638@1\|root,KOG3638@2759\|Eukaryota
Description	intein-mediated protein splicing
COG category	M
BRITE	ko00000,ko00001,ko00002,ko00536,ko01002,ko04516

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi6883	Gvermi6883	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_24229 351789..353555 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6883.t1.start1	Gvermi6883.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_24229 351789..351791 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6883.t1.CDS1	Gvermi6883.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_24229 351789..353555 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6883.t1.exon1	Gvermi6883.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_24229 351789..353555 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6883.t1.stop1	Gvermi6883.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_24229 353553..353555 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6883.t1	Gvermi6883.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_24229 351789..353555 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_24229:351789..353555+
coding sequence from alignment at ScGOVlb_24229:351789..353555+

mRNA sequence

>Gvermi6883.t1 ID=Gvermi6883.t1|Name=Gvermi6883.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=589bp
MRLLALLAFGAVCRLAAAEILWDTCEGEADFPGIENGNYFNLCIQDHEFT
GEKWAWTFTKTTISNTVFDKCLFENTREKTSNFTEATWNSVLFKDCEFTS
FTDNAMIFDKTVLNDVQFVGCTFHSSADIHFTEFMFNNVSFVDCNFQSDT
NFSLGQINGMLVDNSRIKRSSAATTASGNDAFRMHQLTVRDFLIKDSQFI
NPIRFEGVAAADIAVNDTSFNKVFCHSLEETGPFQSEPEIRYFSGFNDTI
FAGVDFLDKVLCDQTSWHGMHFENVTFWTDATFASSDILDMYWNKVKMDT
RDGSQSELDLSNSYIRRRVLANTTVKGVANFKKSIFETVLVQNFNGDTPI
FDDAEFRQEYIDGACCTRACKTLKCVCNITEPSGVCPEGDHTVNINVIPI
CFPASASLRRHDGAVVRMEDVSISDKIAVGGGYHSDIYFFGHRSAEATAE
FVSVQHDASEKPLRISADHYLYVNGKLSTARTVSTGDVLRGADGQDTVTV
LGTGREMHRGVYAPTSLHGDLLVDDIVVSSYTKALHPGVAHKMLYPLRLL
YRYGPASVVSRFAMLHERSWAGLARVLRLPEGADVMDV*

spliced messenger RNA

>Gvermi6883.t1 ID=Gvermi6883.t1|Name=Gvermi6883.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1767bp|location=Sequence derived from alignment at ScGOVlb_24229:351789..353555+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
atgcgcctgctcgcgctgcttgccttcggcgccgtgtgccgcctggccgc
cgccgAAATCCTCTGGGACACCTGCGAGGGCGAGGCCGACTTCCCGGGCA
TCGAGAACGGCAACTACTTCAACCTCTGCATCCAAGACCACGAATTCACG
GGCGAGAAATGGGCGTGGACCTTCACGAAGACCACCATCTCCAACACCGT
CTTTGATAAATGCCTCTTCGAGAACACCCGTGAGAAGACAAGCAACTTCA
CCGAGGCCACGTGGAACTCCGTCCTGTTCAAAGACTGCGAATTCACGAGC
TTCACCGACAACGCAATGATCTTTGACAAGACCGTTCTCAACGACGTTCA
GTTTGTCGGATGCACCTTCCACTCCAGCGCCGACATTCACTTCACCGAGT
TTATGTTCAACAACGTGTCGTTTGTGGACTGTAACTTCCAGTCCGACACT
AACTTTTCGCTCGGCCAGATCAACGGCATGCTCGTGGACAACTCGCGAAT
CAAGCGCTCCTCCGCTGCCACCACTGCGTCCGGAAACGATGCGTTCAGGA
TGCACCAGTTGACCGTGCGCGACTTTCTCATCAAGGACTCGCAGTTCATC
AACCCCATCCGCTTCGAGGGCGTTGCCGCCGCCGATATTGCCGTCAACGA
CACTTCTTTCAACAAGGTGTTCTGTCACAGTTTGGAGGAGACCGGCCCGT
TTCAGAGCGAGCCTGAGATCAGGTATTTCAGCGGCTTTAATGACACCATT
TTTGCGGGCGTCGACTTCTTAGACAAAGTTCTGTGCGACCAGACTTCGTG
GCATGGCATGCATTTTGAGAATGTTACTTTCTGGACCGATGCTACGTTTG
CCAGCTCGGACATTCTTGACATGTATTGGAACAAGGTGAAAATGGATACG
CGCGATGGTTCGCAATCGGAGCTGGACCTCTCCAACAGCTACATCAGGCG
GCGTGTATTGGCCAACACCACCGTAAAGGGCGTGGCCAACTTCAAGAAGA
GTATATTTGAAACGGTGTTGGTGCAAAACTTTAACGGCGACACTCCGATT
TTCGACGATGCTGAGTTTCGACAAGAGTACATTGACGGTGCCTGTTGCAC
GCGTGCATGCAAGACGCTCAAATGCGTGTGTAACATTACAGAGCCGTCTG
GCGTGTGCCCAGAGGGCGACCACACCGTGAACATTAATGTGATACCGATT
TGCTTCCCGGCTTCGGCTTCTTTGCGACGCCATGATGGTGCCGTTGTTCG
CATGGAAGACGTTTCTATCAGTGATAAGATTGCCGTTGGCGGTGGTTACC
ATTCCGATATTTACTTCTTCGGTCATCGGTCTGCCGAGGCCACGGCCGAA
TTCGTTTCCGTTCAACATGATGCCTCTGAGAAGCCCCTTCGTATCTCGGC
GGACCACTACTTGTACGTGAACGGGAAACTGAGCACGGCGCGAACGGTGA
GCACCGGAGATGTGCTGCGCGGTGCGGACGGACAGGACACGGTCACGGTG
CTTGGCACGGGGCGCGAAATGCACCGCGGAGTATACGCGCCAACATCTCT
GCACGGCGATTTGTTGGTGGACGACATTGTGGTTTCGAGTTATACGAAGG
CGTTGCATCCAGGCGTGGCGCACAAGATGCTCTACCCTCTGAGGCTTTTG
TACCGATACGGACCGGCTTCCGTGGTGAGCCGTTTCGCAATGTTGCACGA
ACGCAGTTGGGCGGGGCTAGCTCGTGTGCTGCGTTTGCCGGAGGGCGCTG
ACGTGATGGACGTTTAG

protein sequence of Gvermi6883.t1

>Gvermi6883.t1 ID=Gvermi6883.t1|Name=Gvermi6883.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=589bp
MRLLALLAFGAVCRLAAAEILWDTCEGEADFPGIENGNYFNLCIQDHEFT
GEKWAWTFTKTTISNTVFDKCLFENTREKTSNFTEATWNSVLFKDCEFTS
FTDNAMIFDKTVLNDVQFVGCTFHSSADIHFTEFMFNNVSFVDCNFQSDT
NFSLGQINGMLVDNSRIKRSSAATTASGNDAFRMHQLTVRDFLIKDSQFI
NPIRFEGVAAADIAVNDTSFNKVFCHSLEETGPFQSEPEIRYFSGFNDTI
FAGVDFLDKVLCDQTSWHGMHFENVTFWTDATFASSDILDMYWNKVKMDT
RDGSQSELDLSNSYIRRRVLANTTVKGVANFKKSIFETVLVQNFNGDTPI
FDDAEFRQEYIDGACCTRACKTLKCVCNITEPSGVCPEGDHTVNINVIPI
CFPASASLRRHDGAVVRMEDVSISDKIAVGGGYHSDIYFFGHRSAEATAE
FVSVQHDASEKPLRISADHYLYVNGKLSTARTVSTGDVLRGADGQDTVTV
LGTGREMHRGVYAPTSLHGDLLVDDIVVSSYTKALHPGVAHKMLYPLRLL
YRYGPASVVSRFAMLHERSWAGLARVLRLPEGADVMDV*

mRNA from alignment at ScGOVlb_24229:351789..353555+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi6883.t1 ID=Gvermi6883.t1|Name=Gvermi6883.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1767bp|location=Sequence derived from alignment at ScGOVlb_24229:351789..353555+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
atgcgcctgctcgcgctgcttgccttcggcgccgtgtgccgcctggccgc
cgccgAAATCCTCTGGGACACCTGCGAGGGCGAGGCCGACTTCCCGGGCA
TCGAGAACGGCAACTACTTCAACCTCTGCATCCAAGACCACGAATTCACG
GGCGAGAAATGGGCGTGGACCTTCACGAAGACCACCATCTCCAACACCGT
CTTTGATAAATGCCTCTTCGAGAACACCCGTGAGAAGACAAGCAACTTCA
CCGAGGCCACGTGGAACTCCGTCCTGTTCAAAGACTGCGAATTCACGAGC
TTCACCGACAACGCAATGATCTTTGACAAGACCGTTCTCAACGACGTTCA
GTTTGTCGGATGCACCTTCCACTCCAGCGCCGACATTCACTTCACCGAGT
TTATGTTCAACAACGTGTCGTTTGTGGACTGTAACTTCCAGTCCGACACT
AACTTTTCGCTCGGCCAGATCAACGGCATGCTCGTGGACAACTCGCGAAT
CAAGCGCTCCTCCGCTGCCACCACTGCGTCCGGAAACGATGCGTTCAGGA
TGCACCAGTTGACCGTGCGCGACTTTCTCATCAAGGACTCGCAGTTCATC
AACCCCATCCGCTTCGAGGGCGTTGCCGCCGCCGATATTGCCGTCAACGA
CACTTCTTTCAACAAGGTGTTCTGTCACAGTTTGGAGGAGACCGGCCCGT
TTCAGAGCGAGCCTGAGATCAGGTATTTCAGCGGCTTTAATGACACCATT
TTTGCGGGCGTCGACTTCTTAGACAAAGTTCTGTGCGACCAGACTTCGTG
GCATGGCATGCATTTTGAGAATGTTACTTTCTGGACCGATGCTACGTTTG
CCAGCTCGGACATTCTTGACATGTATTGGAACAAGGTGAAAATGGATACG
CGCGATGGTTCGCAATCGGAGCTGGACCTCTCCAACAGCTACATCAGGCG
GCGTGTATTGGCCAACACCACCGTAAAGGGCGTGGCCAACTTCAAGAAGA
GTATATTTGAAACGGTGTTGGTGCAAAACTTTAACGGCGACACTCCGATT
TTCGACGATGCTGAGTTTCGACAAGAGTACATTGACGGTGCCTGTTGCAC
GCGTGCATGCAAGACGCTCAAATGCGTGTGTAACATTACAGAGCCGTCTG
GCGTGTGCCCAGAGGGCGACCACACCGTGAACATTAATGTGATACCGATT
TGCTTCCCGGCTTCGGCTTCTTTGCGACGCCATGATGGTGCCGTTGTTCG
CATGGAAGACGTTTCTATCAGTGATAAGATTGCCGTTGGCGGTGGTTACC
ATTCCGATATTTACTTCTTCGGTCATCGGTCTGCCGAGGCCACGGCCGAA
TTCGTTTCCGTTCAACATGATGCCTCTGAGAAGCCCCTTCGTATCTCGGC
GGACCACTACTTGTACGTGAACGGGAAACTGAGCACGGCGCGAACGGTGA
GCACCGGAGATGTGCTGCGCGGTGCGGACGGACAGGACACGGTCACGGTG
CTTGGCACGGGGCGCGAAATGCACCGCGGAGTATACGCGCCAACATCTCT
GCACGGCGATTTGTTGGTGGACGACATTGTGGTTTCGAGTTATACGAAGG
CGTTGCATCCAGGCGTGGCGCACAAGATGCTCTACCCTCTGAGGCTTTTG
TACCGATACGGACCGGCTTCCGTGGTGAGCCGTTTCGCAATGTTGCACGA
ACGCAGTTGGGCGGGGCTAGCTCGTGTGCTGCGTTTGCCGGAGGGCGCTG
ACGTGATGGACGTTTAG

Coding sequence (CDS) from alignment at ScGOVlb_24229:351789..353555+

>Gvermi6883.t1 ID=Gvermi6883.t1|Name=Gvermi6883.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1767bp|location=Sequence derived from alignment at ScGOVlb_24229:351789..353555+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
atgcgcctgctcgcgctgcttgccttcggcgccgtgtgccgcctggccgc
cgccgAAATCCTCTGGGACACCTGCGAGGGCGAGGCCGACTTCCCGGGCA
TCGAGAACGGCAACTACTTCAACCTCTGCATCCAAGACCACGAATTCACG
GGCGAGAAATGGGCGTGGACCTTCACGAAGACCACCATCTCCAACACCGT
CTTTGATAAATGCCTCTTCGAGAACACCCGTGAGAAGACAAGCAACTTCA
CCGAGGCCACGTGGAACTCCGTCCTGTTCAAAGACTGCGAATTCACGAGC
TTCACCGACAACGCAATGATCTTTGACAAGACCGTTCTCAACGACGTTCA
GTTTGTCGGATGCACCTTCCACTCCAGCGCCGACATTCACTTCACCGAGT
TTATGTTCAACAACGTGTCGTTTGTGGACTGTAACTTCCAGTCCGACACT
AACTTTTCGCTCGGCCAGATCAACGGCATGCTCGTGGACAACTCGCGAAT
CAAGCGCTCCTCCGCTGCCACCACTGCGTCCGGAAACGATGCGTTCAGGA
TGCACCAGTTGACCGTGCGCGACTTTCTCATCAAGGACTCGCAGTTCATC
AACCCCATCCGCTTCGAGGGCGTTGCCGCCGCCGATATTGCCGTCAACGA
CACTTCTTTCAACAAGGTGTTCTGTCACAGTTTGGAGGAGACCGGCCCGT
TTCAGAGCGAGCCTGAGATCAGGTATTTCAGCGGCTTTAATGACACCATT
TTTGCGGGCGTCGACTTCTTAGACAAAGTTCTGTGCGACCAGACTTCGTG
GCATGGCATGCATTTTGAGAATGTTACTTTCTGGACCGATGCTACGTTTG
CCAGCTCGGACATTCTTGACATGTATTGGAACAAGGTGAAAATGGATACG
CGCGATGGTTCGCAATCGGAGCTGGACCTCTCCAACAGCTACATCAGGCG
GCGTGTATTGGCCAACACCACCGTAAAGGGCGTGGCCAACTTCAAGAAGA
GTATATTTGAAACGGTGTTGGTGCAAAACTTTAACGGCGACACTCCGATT
TTCGACGATGCTGAGTTTCGACAAGAGTACATTGACGGTGCCTGTTGCAC
GCGTGCATGCAAGACGCTCAAATGCGTGTGTAACATTACAGAGCCGTCTG
GCGTGTGCCCAGAGGGCGACCACACCGTGAACATTAATGTGATACCGATT
TGCTTCCCGGCTTCGGCTTCTTTGCGACGCCATGATGGTGCCGTTGTTCG
CATGGAAGACGTTTCTATCAGTGATAAGATTGCCGTTGGCGGTGGTTACC
ATTCCGATATTTACTTCTTCGGTCATCGGTCTGCCGAGGCCACGGCCGAA
TTCGTTTCCGTTCAACATGATGCCTCTGAGAAGCCCCTTCGTATCTCGGC
GGACCACTACTTGTACGTGAACGGGAAACTGAGCACGGCGCGAACGGTGA
GCACCGGAGATGTGCTGCGCGGTGCGGACGGACAGGACACGGTCACGGTG
CTTGGCACGGGGCGCGAAATGCACCGCGGAGTATACGCGCCAACATCTCT
GCACGGCGATTTGTTGGTGGACGACATTGTGGTTTCGAGTTATACGAAGG
CGTTGCATCCAGGCGTGGCGCACAAGATGCTCTACCCTCTGAGGCTTTTG
TACCGATACGGACCGGCTTCCGTGGTGAGCCGTTTCGCAATGTTGCACGA
ACGCAGTTGGGCGGGGCTAGCTCGTGTGCTGCGTTTGCCGGAGGGCGCTG
ACGTGATGGACGTTTAG