Gvermi6881.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi6881.t1
Unique NameGvermi6881.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length158
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24229contigScGOVlb_24229:345503..345976 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1306990.BARG01000018_gene1714
Preferred namehsp18
PFAMsHSP20
Max annot lvl201174|Actinobacteria
KEGG koko:K13993
KEGG Pathwayko04141,map04141
Evalue1.41e-07
EggNOG OGsCOG0071@1|root,COG0071@2|Bacteria,2IHVJ@201174|Actinobacteria
DescriptionBelongs to the small heat shock protein (HSP20) family
COG categoryO
BRITEko00000,ko00001,ko03110
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi6881Gvermi6881Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_24229 345503..345976 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6881.t1.stop1Gvermi6881.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_24229 345503..345505 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6881.t1.CDS1Gvermi6881.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24229 345503..345976 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6881.t1.exon1Gvermi6881.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24229 345503..345976 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6881.t1.start1Gvermi6881.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_24229 345974..345976 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6881.t1Gvermi6881.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_24229 345503..345976 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi6881.t1 ID=Gvermi6881.t1|Name=Gvermi6881.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=158bp
MFAANSQSHAPRNPFAPHPYSNLLSQKHSSTPPTIEPVYHHQLHEHNIFV
QVELPGVLKQHISLEIHDNHLVLCAKRFRVSKLATRTRDHQPVTEADLCT
DQNDAAKEPAFVYALEMRMRHDADADAVRVDGYEDGILTIRIPLIHSSAP
RKITIDS*
back to top

spliced messenger RNA

>Gvermi6881.t1 ID=Gvermi6881.t1|Name=Gvermi6881.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=474bp|location=Sequence derived from alignment at ScGOVlb_24229:345503..345976- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTTGCCGCCAATTCGCAGTCCCACGCCCCGCGCAACCCGTTCGCTCC
GCACCCGTACTCCAACCTCCTGTCCCAGAAGCACTCTTCCACCCCCCCTA
CCATAGAGCCCGTGTACCATCACCAGCTTCACGAGCACAACATCTTCGTG
CAGGTCGAGTTGCCGGGCGTACTCAAGCAGCACATCTCCCTCGAGATTCA
CGATAACCATCTCGTCCTGTGCGCCAAGCGCTTCCGAGTCAGCAAGCTTG
CGACAAGGACCCGCGACCACCAGCCTGTGACGGAGGCCGATTTGTGCACC
GACCAAAATGACGCCGCGAAGGAACCGGCGTTTGTTTACGCTTTGGAAAT
GAGAATGAGGCATGATGCCGATGCCGATGCTGTTCGCGTCGACGGCTATG
AAGATGGTATTCTTACCATTCGAATTCCGCTTATCCATAGCTCTGCACCC
CGCAAGATCACCATCGATTCCTGA
back to top

protein sequence of Gvermi6881.t1

>Gvermi6881.t1 ID=Gvermi6881.t1|Name=Gvermi6881.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=158bp
MFAANSQSHAPRNPFAPHPYSNLLSQKHSSTPPTIEPVYHHQLHEHNIFV
QVELPGVLKQHISLEIHDNHLVLCAKRFRVSKLATRTRDHQPVTEADLCT
DQNDAAKEPAFVYALEMRMRHDADADAVRVDGYEDGILTIRIPLIHSSAP
RKITIDS*
back to top

mRNA from alignment at ScGOVlb_24229:345503..345976-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi6881.t1 ID=Gvermi6881.t1|Name=Gvermi6881.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=474bp|location=Sequence derived from alignment at ScGOVlb_24229:345503..345976- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTTTGCCGCCAATTCGCAGTCCCACGCCCCGCGCAACCCGTTCGCTCC
GCACCCGTACTCCAACCTCCTGTCCCAGAAGCACTCTTCCACCCCCCCTA
CCATAGAGCCCGTGTACCATCACCAGCTTCACGAGCACAACATCTTCGTG
CAGGTCGAGTTGCCGGGCGTACTCAAGCAGCACATCTCCCTCGAGATTCA
CGATAACCATCTCGTCCTGTGCGCCAAGCGCTTCCGAGTCAGCAAGCTTG
CGACAAGGACCCGCGACCACCAGCCTGTGACGGAGGCCGATTTGTGCACC
GACCAAAATGACGCCGCGAAGGAACCGGCGTTTGTTTACGCTTTGGAAAT
GAGAATGAGGCATGATGCCGATGCCGATGCTGTTCGCGTCGACGGCTATG
AAGATGGTATTCTTACCATTCGAATTCCGCTTATCCATAGCTCTGCACCC
CGCAAGATCACCATCGATTCCTGA
back to top

Coding sequence (CDS) from alignment at ScGOVlb_24229:345503..345976-

>Gvermi6881.t1 ID=Gvermi6881.t1|Name=Gvermi6881.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=474bp|location=Sequence derived from alignment at ScGOVlb_24229:345503..345976- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTTTGCCGCCAATTCGCAGTCCCACGCCCCGCGCAACCCGTTCGCTCC
GCACCCGTACTCCAACCTCCTGTCCCAGAAGCACTCTTCCACCCCCCCTA
CCATAGAGCCCGTGTACCATCACCAGCTTCACGAGCACAACATCTTCGTG
CAGGTCGAGTTGCCGGGCGTACTCAAGCAGCACATCTCCCTCGAGATTCA
CGATAACCATCTCGTCCTGTGCGCCAAGCGCTTCCGAGTCAGCAAGCTTG
CGACAAGGACCCGCGACCACCAGCCTGTGACGGAGGCCGATTTGTGCACC
GACCAAAATGACGCCGCGAAGGAACCGGCGTTTGTTTACGCTTTGGAAAT
GAGAATGAGGCATGATGCCGATGCCGATGCTGTTCGCGTCGACGGCTATG
AAGATGGTATTCTTACCATTCGAATTCCGCTTATCCATAGCTCTGCACCC
CGCAAGATCACCATCGATTCCTGA
back to top