Gvermi6878.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi6878.t1
Unique NameGvermi6878.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length231
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24229contigScGOVlb_24229:336563..337413 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog29730.Gorai.009G041200.1
PFAMsKH_2,Ribosomal_S3_C
Max annot lvl35493|Streptophyta
KEGG koko:K02985
KEGG Pathwayko03010,map03010
KEGG ModuleM00177
Evalue5.31e-120
EggNOG OGsCOG0092@1|root,KOG3181@2759|Eukaryota,37M1Z@33090|Viridiplantae,3GBVS@35493|Streptophyta
DescriptionBelongs to the universal ribosomal protein uS3 family
COG categoryJ
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi6878Gvermi6878Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_24229 336563..337413 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6878.t1Gvermi6878.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_24229 336563..337413 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6878.t1.stop1Gvermi6878.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_24229 336563..336565 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6878.t1.CDS1Gvermi6878.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24229 336563..336859 -
Gvermi6878.t1.CDS2Gvermi6878.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24229 337018..337413 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6878.t1.exon1Gvermi6878.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24229 336563..336859 -
Gvermi6878.t1.exon2Gvermi6878.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24229 337018..337413 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6878.t1.intron1Gvermi6878.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_24229 336860..337017 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6878.t1.start1Gvermi6878.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_24229 337411..337413 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi6878.t1 ID=Gvermi6878.t1|Name=Gvermi6878.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=231bp
MAAQISKKKKFVADGVLYAELNELLTRELAEEGYSGVEVRVTPSKTEVVI
RATRTQSVLGEKGRRIRELTAVVQKRFAYPENSVELFVEKVANRGLCAIA
QAESLRYKLVGGLAVRRACYGVLRFVMENGAKGCSVSVSGKLRAQRAKTM
KFSDGYMISSGNPVKDYVDTAYRHVLLRQGVLGIKVMIMLPHDPTGKTGP
QKPLPDVINVIEPKEEVTPPPAPITPVPVM*
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spliced messenger RNA

>Gvermi6878.t1 ID=Gvermi6878.t1|Name=Gvermi6878.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=693bp|location=Sequence derived from alignment at ScGOVlb_24229:336563..337413- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGGCTCAGATCTCCAAGAAGAAGAAGTTCGTCGCGGACGGGGTCCT
GTACGCCGAGCTAAATGAGCTTCTCACCCGCGAGCTGGCTGAGGAAGGCT
ATTCCGGAGTCGAGGTCCGTGTAACTCCATCGAAGACCGAGGTTGTCATT
CGTGCTACCAGAACTCAATCTGTTTTGGGCGAAAAGGGTCGCAGAATCCG
TGAACTCACTGCCGTTGTGCAAAAGCGATTTGCTTATCCGGAAAACTCCG
TGGAGCTGTTCGTTGAGAAGGTAGCAAATCGTGGATTGTGCGCTATTGCG
CAGGCTGAGAGTCTCAGATATAAGCTTGTGGGTGGTCTGGCTGTCAGAAG
AGCCTGCTATGGTGTGTTGCGGTTTGTTATGGAGAATGGCGCAAAGGGAT
GCTCCGTTTCTGTTTCAGGAAAGTTGCGTGCGCAGCGTGCCAAGACCATG
AAGTTCAGCGACGGATACATGATATCCTCAGGCAATCCAGTCAAAGACTA
CGTCGACACTGCGTATCGCCACGTGCTGTTGCGACAGGGAGTGCTTGGCA
TCAAGGTGATGATCATGCTTCCGCATGATCCCACCGGCAAGACCGGCCCG
CAAAAGCCGCTACCAGATGTCATCAATGTTATTGAGCCGAAGGAGGAGGT
TACTCCTCCACCTGCTCCAATTACCCCGGTGCCAGTCATGTAA
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protein sequence of Gvermi6878.t1

>Gvermi6878.t1 ID=Gvermi6878.t1|Name=Gvermi6878.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=231bp
MAAQISKKKKFVADGVLYAELNELLTRELAEEGYSGVEVRVTPSKTEVVI
RATRTQSVLGEKGRRIRELTAVVQKRFAYPENSVELFVEKVANRGLCAIA
QAESLRYKLVGGLAVRRACYGVLRFVMENGAKGCSVSVSGKLRAQRAKTM
KFSDGYMISSGNPVKDYVDTAYRHVLLRQGVLGIKVMIMLPHDPTGKTGP
QKPLPDVINVIEPKEEVTPPPAPITPVPVM*
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mRNA from alignment at ScGOVlb_24229:336563..337413-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi6878.t1 ID=Gvermi6878.t1|Name=Gvermi6878.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=851bp|location=Sequence derived from alignment at ScGOVlb_24229:336563..337413- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCGGCTCAGATCTCCAAGAAGAAGAAGTTCGTCGCGGACGGGGTCCT
GTACGCCGAGCTAAATGAGCTTCTCACCCGCGAGCTGGCTGAGGAAGGCT
ATTCCGGAGTCGAGGTCCGTGTAACTCCATCGAAGACCGAGGTTGTCATT
CGTGCTACCAGAACTCAATCTGTTTTGGGCGAAAAGGGTCGCAGAATCCG
TGAACTCACTGCCGTTGTGCAAAAGCGATTTGCTTATCCGGAAAACTCCG
TGGAGCTGTTCGTTGAGAAGGTAGCAAATCGTGGATTGTGCGCTATTGCG
CAGGCTGAGAGTCTCAGATATAAGCTTGTGGGTGGTCTGGCTGTCAGAAG
AGCCTGCTATGGTGTGTTGCGGTTTGTTATGGAGAATGGCGCAAAGGTAA
GTCCATTGTGTATTGTAGCCTCTAGAGTCGATATATCTGCAAGATCCACG
TCTTGAGAGCACCGATTGTAGCAATCCAGCCACTCGCTTACTACGGAGAC
ATAATTTCTAACACCTCTCTTCTTTGCTATGATGGTTTGTTTTTCCTCCG
ACAGGGATGCTCCGTTTCTGTTTCAGGAAAGTTGCGTGCGCAGCGTGCCA
AGACCATGAAGTTCAGCGACGGATACATGATATCCTCAGGCAATCCAGTC
AAAGACTACGTCGACACTGCGTATCGCCACGTGCTGTTGCGACAGGGAGT
GCTTGGCATCAAGGTGATGATCATGCTTCCGCATGATCCCACCGGCAAGA
CCGGCCCGCAAAAGCCGCTACCAGATGTCATCAATGTTATTGAGCCGAAG
GAGGAGGTTACTCCTCCACCTGCTCCAATTACCCCGGTGCCAGTCATGTA
A
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Coding sequence (CDS) from alignment at ScGOVlb_24229:336563..337413-

>Gvermi6878.t1 ID=Gvermi6878.t1|Name=Gvermi6878.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=693bp|location=Sequence derived from alignment at ScGOVlb_24229:336563..337413- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCGGCTCAGATCTCCAAGAAGAAGAAGTTCGTCGCGGACGGGGTCCT
GTACGCCGAGCTAAATGAGCTTCTCACCCGCGAGCTGGCTGAGGAAGGCT
ATTCCGGAGTCGAGGTCCGTGTAACTCCATCGAAGACCGAGGTTGTCATT
CGTGCTACCAGAACTCAATCTGTTTTGGGCGAAAAGGGTCGCAGAATCCG
TGAACTCACTGCCGTTGTGCAAAAGCGATTTGCTTATCCGGAAAACTCCG
TGGAGCTGTTCGTTGAGAAGGTAGCAAATCGTGGATTGTGCGCTATTGCG
CAGGCTGAGAGTCTCAGATATAAGCTTGTGGGTGGTCTGGCTGTCAGAAG
AGCCTGCTATGGTGTGTTGCGGTTTGTTATGGAGAATGGCGCAAAGGGAT
GCTCCGTTTCTGTTTCAGGAAAGTTGCGTGCGCAGCGTGCCAAGACCATG
AAGTTCAGCGACGGATACATGATATCCTCAGGCAATCCAGTCAAAGACTA
CGTCGACACTGCGTATCGCCACGTGCTGTTGCGACAGGGAGTGCTTGGCA
TCAAGGTGATGATCATGCTTCCGCATGATCCCACCGGCAAGACCGGCCCG
CAAAAGCCGCTACCAGATGTCATCAATGTTATTGAGCCGAAGGAGGAGGT
TACTCCTCCACCTGCTCCAATTACCCCGGTGCCAGTCATGTAA
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