Gvermi6874.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi6874.t1
Unique NameGvermi6874.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length294
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24229contigScGOVlb_24229:327731..328721 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog671143.DAMO_2102
PFAMsAAA_24,PDDEXK_1
Max annot lvl2|Bacteria
KEGG koko:K10742
KEGG Pathwayko03030,map03030
Evalue2.47e-06
EggNOG OGsCOG2887@1|root,COG2887@2|Bacteria,2NR12@2323|unclassified Bacteria
EC3.6.4.12
DescriptionPD-(D/E)XK nuclease superfamily
COG categoryL
BRITEko00000,ko00001,ko01000,ko03032
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi6874Gvermi6874Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_24229 327731..328721 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6874.t1Gvermi6874.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_24229 327731..328721 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6874.t1.stop1Gvermi6874.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_24229 327731..327733 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6874.t1.CDS1Gvermi6874.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24229 327731..328168 -
Gvermi6874.t1.CDS2Gvermi6874.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24229 328278..328721 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6874.t1.exon1Gvermi6874.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24229 327731..328168 -
Gvermi6874.t1.exon2Gvermi6874.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24229 328278..328721 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6874.t1.intron1Gvermi6874.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_24229 328169..328277 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6874.t1.start1Gvermi6874.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_24229 328719..328721 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi6874.t1 ID=Gvermi6874.t1|Name=Gvermi6874.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=294bp
MVRLLAPGFLLPRTNHAARLFRTPLRLRQSQVCALKRNVPTLGRRKQVAM
VEENYRLAPSDFAFLWEECKRCFYLKVHGALPRPRAPFPSIFTSIDLGMK
RHMSGLRTNELFPGMRPGTFLCEDDDPWIECLPIIPPGQSHGAYIRGKID
ALIRFDDGTFGIIDFKTSSVAKTSSTYSRQLHAYAAAMENPSDKSQLKKV
LISELGLVVYTPSEFHTPLDMEGKLKAAMTGGIKYVKIERDDPGFHQFLG
EVIDVLKKPEAPSPKLATGRNFSSCPYCNYLHQAQKSGLLLVP*
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spliced messenger RNA

>Gvermi6874.t1 ID=Gvermi6874.t1|Name=Gvermi6874.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=882bp|location=Sequence derived from alignment at ScGOVlb_24229:327731..328721- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTCCGCCTCTTAGCTCCGGGCTTTCTTCTCCCGCGTACAAACCATGC
CGCGCGGTTGTTTAGAACGCCTCTTAGACTACGTCAATCCCAAGTTTGCG
CACTGAAACGAAACGTTCCAACTCTGGGGCGACGCAAACAAGTTGCGATG
GTGGAAGAAAATTATCGACTCGCCCCCTCCGATTTTGCGTTCTTGTGGGA
AGAGTGCAAGCGTTGTTTTTATCTTAAAGTTCATGGCGCTTTACCCCGTC
CACGAGCTCCTTTTCCTTCAATATTTACCTCCATCGATCTTGGTATGAAG
CGTCACATGAGCGGATTGCGAACAAATGAGCTCTTCCCTGGAATGCGTCC
CGGCACCTTCCTTTGCGAAGATGACGACCCGTGGATCGAGTGTCTCCCTA
TCATTCCTCCGGGTCAGAGCCACGGTGCGTATATTCGTGGTAAGATTGAT
GCTCTAATACGCTTCGACGATGGAACGTTTGGTATAATCGATTTCAAAAC
GTCATCCGTTGCAAAAACCTCTTCGACATATTCGCGCCAACTTCATGCGT
ATGCAGCGGCAATGGAAAATCCCTCTGATAAGTCCCAGCTGAAGAAGGTA
TTGATATCAGAGCTTGGACTAGTGGTGTACACGCCCTCAGAGTTTCACAC
ACCGCTGGATATGGAAGGAAAGTTAAAAGCAGCGATGACTGGGGGAATAA
AATACGTCAAAATTGAACGTGATGATCCCGGCTTTCATCAATTTCTCGGA
GAAGTTATCGACGTGCTCAAAAAGCCCGAAGCCCCTTCCCCCAAGTTAGC
GACCGGACGAAATTTCTCTAGTTGTCCATATTGCAACTATTTGCACCAGG
CTCAGAAGAGTGGGCTTTTGCTGGTGCCATAA
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protein sequence of Gvermi6874.t1

>Gvermi6874.t1 ID=Gvermi6874.t1|Name=Gvermi6874.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=294bp
MVRLLAPGFLLPRTNHAARLFRTPLRLRQSQVCALKRNVPTLGRRKQVAM
VEENYRLAPSDFAFLWEECKRCFYLKVHGALPRPRAPFPSIFTSIDLGMK
RHMSGLRTNELFPGMRPGTFLCEDDDPWIECLPIIPPGQSHGAYIRGKID
ALIRFDDGTFGIIDFKTSSVAKTSSTYSRQLHAYAAAMENPSDKSQLKKV
LISELGLVVYTPSEFHTPLDMEGKLKAAMTGGIKYVKIERDDPGFHQFLG
EVIDVLKKPEAPSPKLATGRNFSSCPYCNYLHQAQKSGLLLVP*
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mRNA from alignment at ScGOVlb_24229:327731..328721-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi6874.t1 ID=Gvermi6874.t1|Name=Gvermi6874.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=991bp|location=Sequence derived from alignment at ScGOVlb_24229:327731..328721- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGTCCGCCTCTTAGCTCCGGGCTTTCTTCTCCCGCGTACAAACCATGC
CGCGCGGTTGTTTAGAACGCCTCTTAGACTACGTCAATCCCAAGTTTGCG
CACTGAAACGAAACGTTCCAACTCTGGGGCGACGCAAACAAGTTGCGATG
GTGGAAGAAAATTATCGACTCGCCCCCTCCGATTTTGCGTTCTTGTGGGA
AGAGTGCAAGCGTTGTTTTTATCTTAAAGTTCATGGCGCTTTACCCCGTC
CACGAGCTCCTTTTCCTTCAATATTTACCTCCATCGATCTTGGTATGAAG
CGTCACATGAGCGGATTGCGAACAAATGAGCTCTTCCCTGGAATGCGTCC
CGGCACCTTCCTTTGCGAAGATGACGACCCGTGGATCGAGTGTCTCCCTA
TCATTCCTCCGGGTCAGAGCCACGGTGCGTATATTCGTGGTAAGGTATGT
TCGATTCAAATTCCTCCTTTCTGATGCCTATTTGATTAAGAGTGCAGAGA
AGAAGACATCTCCTTTCCAAGATTTCTGACTCCGGTCATTGTTTCTCTGA
TAGATTGATGCTCTAATACGCTTCGACGATGGAACGTTTGGTATAATCGA
TTTCAAAACGTCATCCGTTGCAAAAACCTCTTCGACATATTCGCGCCAAC
TTCATGCGTATGCAGCGGCAATGGAAAATCCCTCTGATAAGTCCCAGCTG
AAGAAGGTATTGATATCAGAGCTTGGACTAGTGGTGTACACGCCCTCAGA
GTTTCACACACCGCTGGATATGGAAGGAAAGTTAAAAGCAGCGATGACTG
GGGGAATAAAATACGTCAAAATTGAACGTGATGATCCCGGCTTTCATCAA
TTTCTCGGAGAAGTTATCGACGTGCTCAAAAAGCCCGAAGCCCCTTCCCC
CAAGTTAGCGACCGGACGAAATTTCTCTAGTTGTCCATATTGCAACTATT
TGCACCAGGCTCAGAAGAGTGGGCTTTTGCTGGTGCCATAA
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Coding sequence (CDS) from alignment at ScGOVlb_24229:327731..328721-

>Gvermi6874.t1 ID=Gvermi6874.t1|Name=Gvermi6874.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=882bp|location=Sequence derived from alignment at ScGOVlb_24229:327731..328721- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGTCCGCCTCTTAGCTCCGGGCTTTCTTCTCCCGCGTACAAACCATGC
CGCGCGGTTGTTTAGAACGCCTCTTAGACTACGTCAATCCCAAGTTTGCG
CACTGAAACGAAACGTTCCAACTCTGGGGCGACGCAAACAAGTTGCGATG
GTGGAAGAAAATTATCGACTCGCCCCCTCCGATTTTGCGTTCTTGTGGGA
AGAGTGCAAGCGTTGTTTTTATCTTAAAGTTCATGGCGCTTTACCCCGTC
CACGAGCTCCTTTTCCTTCAATATTTACCTCCATCGATCTTGGTATGAAG
CGTCACATGAGCGGATTGCGAACAAATGAGCTCTTCCCTGGAATGCGTCC
CGGCACCTTCCTTTGCGAAGATGACGACCCGTGGATCGAGTGTCTCCCTA
TCATTCCTCCGGGTCAGAGCCACGGTGCGTATATTCGTGGTAAGATTGAT
GCTCTAATACGCTTCGACGATGGAACGTTTGGTATAATCGATTTCAAAAC
GTCATCCGTTGCAAAAACCTCTTCGACATATTCGCGCCAACTTCATGCGT
ATGCAGCGGCAATGGAAAATCCCTCTGATAAGTCCCAGCTGAAGAAGGTA
TTGATATCAGAGCTTGGACTAGTGGTGTACACGCCCTCAGAGTTTCACAC
ACCGCTGGATATGGAAGGAAAGTTAAAAGCAGCGATGACTGGGGGAATAA
AATACGTCAAAATTGAACGTGATGATCCCGGCTTTCATCAATTTCTCGGA
GAAGTTATCGACGTGCTCAAAAAGCCCGAAGCCCCTTCCCCCAAGTTAGC
GACCGGACGAAATTTCTCTAGTTGTCCATATTGCAACTATTTGCACCAGG
CTCAGAAGAGTGGGCTTTTGCTGGTGCCATAA
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