Gvermi6869.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi6869.t1
Unique NameGvermi6869.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length494
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24229contigScGOVlb_24229:309605..311402 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi6869Gvermi6869Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_24229 309605..311402 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6869.t1Gvermi6869.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_24229 309605..311402 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6869.t1.start1Gvermi6869.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_24229 309605..309607 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6869.t1.CDS1Gvermi6869.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24229 309605..309656 +
Gvermi6869.t1.CDS2Gvermi6869.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24229 309852..309905 +
Gvermi6869.t1.CDS3Gvermi6869.t1.CDS3Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24229 310027..311402 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6869.t1.exon1Gvermi6869.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24229 309605..309656 +
Gvermi6869.t1.exon2Gvermi6869.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24229 309852..309905 +
Gvermi6869.t1.exon3Gvermi6869.t1.exon3Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24229 310027..311402 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6869.t1.intron1Gvermi6869.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_24229 309657..309851 +
Gvermi6869.t1.intron2Gvermi6869.t1.intron2Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_24229 309906..310026 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6869.t1.stop1Gvermi6869.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_24229 311400..311402 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi6869.t1 ID=Gvermi6869.t1|Name=Gvermi6869.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=494bp
MVAAFRTHLNHPGLGLYAQVRFRLFSSSSFVTFGIPSTLNAASDFAVSAS
TTTDSEDPQFVKFAPTSSRRLPNELFVDRPTTFFDDLFNRRHNSFSYMWA
SAQQEQRSGAALAHLISCAAERYPRSDDPNRHSLCVSTVVGDQTQESLDD
RCNPELTTLLLIGDDNDSNRPNRTGTQTCWCDRMCLKPNAAFQDTSSASP
RMRNIRSFVVLEENADSPTMEASEYENGERGNNRPGRNWFHENLVDAQPP
TGKGVFPRSSNEQIAPGIILRSLRLVNVVDQISSADECPSVASGRADLQL
RMWASVEEEMGSTLNAAVSSDLAETPATRSTIFLTISSALTAVLSFGWIG
MATKLVAKIKSGGSGLKKLSLWSGLIVLTLLELAIENIPIYFLLRQEIAA
RNHLTTFAVEVIGVGNGLAVMPILDTSDEEFVEMMSGLVVIVVKNKGTSV
AGIAVAAVFLSLVSISSIIIGVKQHHRWSDSAYGVVQNDRPTR*
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spliced messenger RNA

>Gvermi6869.t1 ID=Gvermi6869.t1|Name=Gvermi6869.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1482bp|location=Sequence derived from alignment at ScGOVlb_24229:309605..311402+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTGGCTGCTTTCAGAACCCATCTGAACCATCCTGGGTTAGGGTTGTA
CGCTCAGGTCCGCTTCCGTCTGTTCAGCTCTTCATCTTTCGTCACATTTG
GCATCCCTTCCACTCTGAACGCTGCGTCTGACTTTGCCGTCAGCGCCTCG
ACAACCACTGATAGCGAAGATCCCCAGTTCGTAAAATTCGCTCCAACTTC
ATCCCGACGCCTACCGAATGAGCTCTTTGTCGATCGCCCTACCACATTTT
TCGACGACCTCTTCAACAGACGCCATAATTCTTTTTCGTACATGTGGGCT
TCGGCCCAACAAGAACAAAGATCCGGAGCTGCTCTGGCGCATCTTATTTC
ATGTGCCGCAGAAAGATATCCCAGGTCTGATGACCCGAACCGCCACTCCC
TTTGTGTCTCAACTGTTGTAGGCGATCAGACCCAAGAATCTCTGGATGAT
AGATGCAATCCTGAGCTCACTACATTGCTTCTGATTGGAGACGATAACGA
TAGCAATCGACCGAATCGTACCGGCACCCAAACGTGTTGGTGTGACAGAA
TGTGTCTCAAACCAAACGCCGCTTTTCAGGACACGTCAAGTGCTTCTCCA
CGAATGCGAAACATAAGAAGCTTCGTGGTTCTTGAGGAGAACGCGGATTC
GCCCACGATGGAGGCATCCGAATACGAAAATGGAGAACGCGGCAATAATA
GACCAGGCAGAAACTGGTTTCATGAGAATCTCGTAGACGCACAGCCTCCC
ACGGGCAAAGGAGTGTTTCCTAGGTCTAGTAATGAGCAAATTGCGCCCGG
AATTATTTTGAGATCTCTTCGGCTTGTTAACGTTGTAGACCAGATTTCGT
CAGCAGATGAGTGTCCATCTGTTGCAAGCGGAAGGGCAGATCTGCAACTA
CGCATGTGGGCGAGTGTGGAGGAAGAGATGGGCTCAACTCTCAATGCAGC
TGTCTCAAGTGATTTGGCTGAGACACCTGCGACGCGCAGTACAATATTCT
TGACCATATCATCAGCTCTCACGGCCGTGTTGAGCTTTGGATGGATCGGT
ATGGCAACAAAACTAGTCGCTAAGATAAAATCCGGCGGAAGTGGGCTAAA
AAAGCTGTCATTGTGGTCAGGACTCATCGTTCTGACTCTTTTGGAGCTCG
CTATTGAGAATATTCCAATTTACTTCTTGCTACGTCAAGAAATAGCAGCG
CGGAACCATCTTACAACTTTTGCTGTTGAAGTGATAGGCGTAGGGAACGG
ACTTGCTGTGATGCCTATTTTGGACACATCAGACGAGGAGTTCGTTGAGA
TGATGTCCGGGCTAGTGGTGATCGTCGTGAAGAACAAGGGTACTTCTGTG
GCAGGCATTGCTGTCGCCGCAGTTTTCTTATCGTTGGTATCGATTTCAAG
CATAATTATTGGTGTCAAGCAGCATCACAGATGGAGCGACAGTGCAtacg
gtgttgtgcaaaatgataggcccaccagataa
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protein sequence of Gvermi6869.t1

>Gvermi6869.t1 ID=Gvermi6869.t1|Name=Gvermi6869.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=494bp
MVAAFRTHLNHPGLGLYAQVRFRLFSSSSFVTFGIPSTLNAASDFAVSAS
TTTDSEDPQFVKFAPTSSRRLPNELFVDRPTTFFDDLFNRRHNSFSYMWA
SAQQEQRSGAALAHLISCAAERYPRSDDPNRHSLCVSTVVGDQTQESLDD
RCNPELTTLLLIGDDNDSNRPNRTGTQTCWCDRMCLKPNAAFQDTSSASP
RMRNIRSFVVLEENADSPTMEASEYENGERGNNRPGRNWFHENLVDAQPP
TGKGVFPRSSNEQIAPGIILRSLRLVNVVDQISSADECPSVASGRADLQL
RMWASVEEEMGSTLNAAVSSDLAETPATRSTIFLTISSALTAVLSFGWIG
MATKLVAKIKSGGSGLKKLSLWSGLIVLTLLELAIENIPIYFLLRQEIAA
RNHLTTFAVEVIGVGNGLAVMPILDTSDEEFVEMMSGLVVIVVKNKGTSV
AGIAVAAVFLSLVSISSIIIGVKQHHRWSDSAYGVVQNDRPTR*
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mRNA from alignment at ScGOVlb_24229:309605..311402+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi6869.t1 ID=Gvermi6869.t1|Name=Gvermi6869.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1798bp|location=Sequence derived from alignment at ScGOVlb_24229:309605..311402+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGTGGCTGCTTTCAGAACCCATCTGAACCATCCTGGGTTAGGGTTGTA
CGGTAAGTAAAATACGACTTATGCCAATGGTACCTTCGGTGCCGTCGTCG
CCCAATGAGCGACTCCCAAACTCAAAATGTTAATCACCTCGTCTTCTTCC
CAGCCCTTCCACCTTTACACCGTGAGCAGAATTTTTCCGTCCCGTTCAAA
CACACAGGCTCACCGCACTTTCCATGAGCCCTTTCCTTATATAATAGCTC
AGGTCCGCTTCCGTCTGTTCAGCTCTTCATCTTTCGTCACATTTGGCATC
CGTACGTCTTTTCTGTCCTTTCTGTGAAACACTCATGTGTTCGCCACGTC
TTGCGTTCGTCCTGCTGACGGCTTGCCTGTCATCCACCGTTCTCTCCAAT
GAATGCATATTCAAAACAACAGCTTCCACTCTGAACGCTGCGTCTGACTT
TGCCGTCAGCGCCTCGACAACCACTGATAGCGAAGATCCCCAGTTCGTAA
AATTCGCTCCAACTTCATCCCGACGCCTACCGAATGAGCTCTTTGTCGAT
CGCCCTACCACATTTTTCGACGACCTCTTCAACAGACGCCATAATTCTTT
TTCGTACATGTGGGCTTCGGCCCAACAAGAACAAAGATCCGGAGCTGCTC
TGGCGCATCTTATTTCATGTGCCGCAGAAAGATATCCCAGGTCTGATGAC
CCGAACCGCCACTCCCTTTGTGTCTCAACTGTTGTAGGCGATCAGACCCA
AGAATCTCTGGATGATAGATGCAATCCTGAGCTCACTACATTGCTTCTGA
TTGGAGACGATAACGATAGCAATCGACCGAATCGTACCGGCACCCAAACG
TGTTGGTGTGACAGAATGTGTCTCAAACCAAACGCCGCTTTTCAGGACAC
GTCAAGTGCTTCTCCACGAATGCGAAACATAAGAAGCTTCGTGGTTCTTG
AGGAGAACGCGGATTCGCCCACGATGGAGGCATCCGAATACGAAAATGGA
GAACGCGGCAATAATAGACCAGGCAGAAACTGGTTTCATGAGAATCTCGT
AGACGCACAGCCTCCCACGGGCAAAGGAGTGTTTCCTAGGTCTAGTAATG
AGCAAATTGCGCCCGGAATTATTTTGAGATCTCTTCGGCTTGTTAACGTT
GTAGACCAGATTTCGTCAGCAGATGAGTGTCCATCTGTTGCAAGCGGAAG
GGCAGATCTGCAACTACGCATGTGGGCGAGTGTGGAGGAAGAGATGGGCT
CAACTCTCAATGCAGCTGTCTCAAGTGATTTGGCTGAGACACCTGCGACG
CGCAGTACAATATTCTTGACCATATCATCAGCTCTCACGGCCGTGTTGAG
CTTTGGATGGATCGGTATGGCAACAAAACTAGTCGCTAAGATAAAATCCG
GCGGAAGTGGGCTAAAAAAGCTGTCATTGTGGTCAGGACTCATCGTTCTG
ACTCTTTTGGAGCTCGCTATTGAGAATATTCCAATTTACTTCTTGCTACG
TCAAGAAATAGCAGCGCGGAACCATCTTACAACTTTTGCTGTTGAAGTGA
TAGGCGTAGGGAACGGACTTGCTGTGATGCCTATTTTGGACACATCAGAC
GAGGAGTTCGTTGAGATGATGTCCGGGCTAGTGGTGATCGTCGTGAAGAA
CAAGGGTACTTCTGTGGCAGGCATTGCTGTCGCCGCAGTTTTCTTATCGT
TGGTATCGATTTCAAGCATAATTATTGGTGTCAAGCAGCATCACAGATGG
AGCGACAGTGCAtacggtgttgtgcaaaatgataggcccaccagataa
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Coding sequence (CDS) from alignment at ScGOVlb_24229:309605..311402+

>Gvermi6869.t1 ID=Gvermi6869.t1|Name=Gvermi6869.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1482bp|location=Sequence derived from alignment at ScGOVlb_24229:309605..311402+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGTGGCTGCTTTCAGAACCCATCTGAACCATCCTGGGTTAGGGTTGTA
CGCTCAGGTCCGCTTCCGTCTGTTCAGCTCTTCATCTTTCGTCACATTTG
GCATCCCTTCCACTCTGAACGCTGCGTCTGACTTTGCCGTCAGCGCCTCG
ACAACCACTGATAGCGAAGATCCCCAGTTCGTAAAATTCGCTCCAACTTC
ATCCCGACGCCTACCGAATGAGCTCTTTGTCGATCGCCCTACCACATTTT
TCGACGACCTCTTCAACAGACGCCATAATTCTTTTTCGTACATGTGGGCT
TCGGCCCAACAAGAACAAAGATCCGGAGCTGCTCTGGCGCATCTTATTTC
ATGTGCCGCAGAAAGATATCCCAGGTCTGATGACCCGAACCGCCACTCCC
TTTGTGTCTCAACTGTTGTAGGCGATCAGACCCAAGAATCTCTGGATGAT
AGATGCAATCCTGAGCTCACTACATTGCTTCTGATTGGAGACGATAACGA
TAGCAATCGACCGAATCGTACCGGCACCCAAACGTGTTGGTGTGACAGAA
TGTGTCTCAAACCAAACGCCGCTTTTCAGGACACGTCAAGTGCTTCTCCA
CGAATGCGAAACATAAGAAGCTTCGTGGTTCTTGAGGAGAACGCGGATTC
GCCCACGATGGAGGCATCCGAATACGAAAATGGAGAACGCGGCAATAATA
GACCAGGCAGAAACTGGTTTCATGAGAATCTCGTAGACGCACAGCCTCCC
ACGGGCAAAGGAGTGTTTCCTAGGTCTAGTAATGAGCAAATTGCGCCCGG
AATTATTTTGAGATCTCTTCGGCTTGTTAACGTTGTAGACCAGATTTCGT
CAGCAGATGAGTGTCCATCTGTTGCAAGCGGAAGGGCAGATCTGCAACTA
CGCATGTGGGCGAGTGTGGAGGAAGAGATGGGCTCAACTCTCAATGCAGC
TGTCTCAAGTGATTTGGCTGAGACACCTGCGACGCGCAGTACAATATTCT
TGACCATATCATCAGCTCTCACGGCCGTGTTGAGCTTTGGATGGATCGGT
ATGGCAACAAAACTAGTCGCTAAGATAAAATCCGGCGGAAGTGGGCTAAA
AAAGCTGTCATTGTGGTCAGGACTCATCGTTCTGACTCTTTTGGAGCTCG
CTATTGAGAATATTCCAATTTACTTCTTGCTACGTCAAGAAATAGCAGCG
CGGAACCATCTTACAACTTTTGCTGTTGAAGTGATAGGCGTAGGGAACGG
ACTTGCTGTGATGCCTATTTTGGACACATCAGACGAGGAGTTCGTTGAGA
TGATGTCCGGGCTAGTGGTGATCGTCGTGAAGAACAAGGGTACTTCTGTG
GCAGGCATTGCTGTCGCCGCAGTTTTCTTATCGTTGGTATCGATTTCAAG
CATAATTATTGGTGTCAAGCAGCATCACAGATGGAGCGACAGTGCAtacg
gtgttgtgcaaaatgataggcccaccagataa
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