Gvermi6864.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi6864.t1
Unique Name	Gvermi6864.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	691

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_24229	contig	ScGOVlb_24229:237097..239169 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005703923.1
PFAMs	ArsA_ATPase
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K01551
KEGG TC	3.A.19.1,3.A.21.1,3.A.4.1
Evalue	5.06e-151
EggNOG OGs	COG0003@1\|root,KOG2825@2759\|Eukaryota
EC	3.6.3.16
Description	ATPase activity
COG category	P
BRITE	ko00000,ko01000,ko02000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi6864	Gvermi6864	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_24229 237097..239169 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6864.t1.stop1	Gvermi6864.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_24229 237097..237099 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6864.t1.CDS1	Gvermi6864.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_24229 237097..239169 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6864.t1.exon1	Gvermi6864.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_24229 237097..239169 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6864.t1.start1	Gvermi6864.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_24229 239167..239169 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6864.t1	Gvermi6864.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_24229 237097..239169 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_24229:237097..239169-
coding sequence from alignment at ScGOVlb_24229:237097..239169-

mRNA sequence

>Gvermi6864.t1 ID=Gvermi6864.t1|Name=Gvermi6864.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=691bp
LLAASSTPRFIFVGGKGGVGKTTTAAALAVHFASAGLSTLVLSTDPAHSL
GDALRVDLSSGDIVPLPHLALHAVEVDTSAAVAQFRALLATLNDHSDDAD
QAWRTLAAKLGLADFSAVLDTIPPGADELLALVSVLELVQSRPQFAFDRI
VIDTAPTGHTLRFLAFPDFLDKFLQQALALREKLYGARAMLGTVANMFVG
KKTDLNAALTNAAARIQAYRQKMVQLSELFRDPARTEFVVVTIATVLAVE
ESKRLIRHLWDDGIWVRHVVVNQILPPGDARTVRAYLTQLRKGQTREIAF
ATERIADEFGLAVTLVPRFDTEVRGVYGLSALADAAFKRGRTRSYGALFD
DEARADNGAESQFVFVGGKGGVGKTSISAALGVKLAADGFKTLVLSTDPA
HSLADALQVALHGGAPVRVDDARGELFAMEIDTEGAIKEFQKLAGEFVAE
GRRGAGVDIARKLGLEEFAGLLDNAPPGIDELVALTQVMELVKFGDFDRV
VVDTAPTGHTLRLLAFPEFVDKFLGKVIRLKRRLDSAIDRVRSVLGRKDN
REDVVERAASNIQRLRENMEQLRALVRDKQHTQFALVTVPTGLAMAESER
LVQSLRRDEVCVKNVIINQVIGEAAAEAFVRRIMADQSRCVEQLRSVGGD
LDIALTEVPYFDAEVRGGYGLRTMAASLFSPLAARDGASE*

spliced messenger RNA

>Gvermi6864.t1 ID=Gvermi6864.t1|Name=Gvermi6864.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=2073bp|location=Sequence derived from alignment at ScGOVlb_24229:237097..239169- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
CTGCTGGCCGCCTCGTCCACGCCGCGCTTCATCTTCGTCGGCGGCAAGGG
CGGCGTCGGCAAGACCACCACCGCCGCCGCCCTCGCCGTCCATTTTGCCT
CCGCCGGCCTCTCCACCCTCGTCCTGTCTACCGACCCAGCCCACTCACTT
GGCGACGCCCTGCGCGTCGACCTGTCGTCCGGCGACATCGTCCCGCTCCC
GCACCTGGCGCTGCACGCCGTCGAGGTCGACACCTCGGCCGCCGTCGCCC
AGTTCCGCGCCCTGTTGGCCACCCTCAACGACCACTCCGACGACGCCGAC
CAGGCGTGGCGCACCCTGGCCGCCAAGCTCGGCCTCGCCGACTTCTCCGC
CGTGCTGGACACCATCCCGCCCGGCGCCGACGAGCTGCTGGCGCTCGTCA
GCGTCCTCGAACTCGTGCAGTCGCGCCCGCAATTCGCCTTTGACCGCATC
GTCATCGACACCGCCCCCACCGGCCACACCCTCCGCTTCCTCGCCTTCCC
GGACTTTCTGGACAAGTTTCTGCAGCAGGCGCTGGCGCTGCGCGAGAAGC
TGTACGGCGCGCGCGCCATGCTGGGCACCGTCGCCAACATGTTTGTCGGC
AAGAAGACCGACCTCAACGCCGCGCTCACCAACGCCGCCGCCAGAATACA
GGCGTACCGCCAAAAGATGGTGCAGCTCAGCGAACTGTTCCGCGACCCGG
CGCGCACCGAGTTTGTCGTCGTCACCATCGCCACCGTGCTGGCCGTCGAG
GAGAGCAAGAGACTCATCCGCCACCTGTGGGACGACGGCATCTGGGTGCG
CCACGTCGTCGTCAACCAAATCCTGCCGCCGGGCGACGCGCGCACCGTGC
GCGCCTACCTCACGCAGCTGCGAAAGGGGCAGACGCGCGAGATTGCGTTT
GCCACCGAGCGCATTGCGGACGAGTTTGGGCTCGCCGTCACGCTGGTGCC
GCGCTTCGACACGGAGGTGCGCGGCGTGTACGGGCTGTCGGCGCTGGCCG
ACGCCGCCTTCAAGCGCGGCCGCACGCGCAGCTACGGCGCGCTGTTCGAC
GACGAGGCGCGCGCCGACAACGGCGCCGAGTCGCAGTTTGTGTTTGTGGG
CGGCAAGGGCGGCGTGGGCAAGACAAGCATCAGCGCGGCGCTGGGCGTCA
AGCTGGCCGCCGACGGCTTCAAGACGCTGGTGCTGTCGACCGACCCGGCG
CACTCGCTGGCAGACGCGCTGCAGGTGGCGCTGCACGGCGGGGCGCCCGT
GCGCGTGGACGACGCGCGTGGCGAGCTGTTCGCCATGGAGATCGACACGG
AGGGCGCCATCAAGGAGTTCCAGAAGCTCGCCGGCGAGTTTGTGGCCGAG
GGCCGGCGCGGCGCCGGCGTGGACATTGCCAGGAAGCTCGGGCTAGAGGA
GTTTGCCGGGCTGCTGGACAACGCGCCGCCGGGCATCGACGAGCTGGTGG
CGCTGACGCAGGTGATGGAGCTGGTCAAGTTTGGCGACTTTGACCGCGTG
GTGGTGGACACGGCGCCCACGGGCCACACGCTGAGGCTGCTGGCGTTCCC
GGAGTTTGTGGACAAGTTCCTGGGCAAGGTGATCCGGCTGAAGAGGCGGC
TGGACTCGGCGATCGACCGGGTGAGGAGCGTGCTGGGGCGCAAGGACAAC
CGGGAGGACGTGGTGGAGCGCGCGGCCAGCAACATTCAGCGGTTGCGGGA
GAACATGGAGCAGCTGCGGGCGCTGGTGCGCGACAAGCAGCACACGCAGT
TTGCGCTGGTGACGGTGCCGACGGGGCTGGCGATGGCGGAGAGCGAGCGG
CTGGTGCAGTCGCTGCGCCGCGATGAGGTGTGCGTGAAGAACGTGATCAT
CAACCAGGTGATCGGCGAGGCGGCGGCGGAGGCATTTGTGCGGCGCATCA
TGGCGGATCAGAGCCGGTGCGTGGAGCAGCTGCGCTCCGTGGGGGGGGAC
CTGGACATAGCGCTCACGGAGGTGCCGTACTTCGACGCCGAGGTGCGCGG
CGGCTACGGGCTGCGCACCATGGCCGCCAGCCTGTTCTCGCCGCTGGCGG
CGCGCGATGGCGCCAGCGAGTGA

protein sequence of Gvermi6864.t1

>Gvermi6864.t1 ID=Gvermi6864.t1|Name=Gvermi6864.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=691bp
LLAASSTPRFIFVGGKGGVGKTTTAAALAVHFASAGLSTLVLSTDPAHSL
GDALRVDLSSGDIVPLPHLALHAVEVDTSAAVAQFRALLATLNDHSDDAD
QAWRTLAAKLGLADFSAVLDTIPPGADELLALVSVLELVQSRPQFAFDRI
VIDTAPTGHTLRFLAFPDFLDKFLQQALALREKLYGARAMLGTVANMFVG
KKTDLNAALTNAAARIQAYRQKMVQLSELFRDPARTEFVVVTIATVLAVE
ESKRLIRHLWDDGIWVRHVVVNQILPPGDARTVRAYLTQLRKGQTREIAF
ATERIADEFGLAVTLVPRFDTEVRGVYGLSALADAAFKRGRTRSYGALFD
DEARADNGAESQFVFVGGKGGVGKTSISAALGVKLAADGFKTLVLSTDPA
HSLADALQVALHGGAPVRVDDARGELFAMEIDTEGAIKEFQKLAGEFVAE
GRRGAGVDIARKLGLEEFAGLLDNAPPGIDELVALTQVMELVKFGDFDRV
VVDTAPTGHTLRLLAFPEFVDKFLGKVIRLKRRLDSAIDRVRSVLGRKDN
REDVVERAASNIQRLRENMEQLRALVRDKQHTQFALVTVPTGLAMAESER
LVQSLRRDEVCVKNVIINQVIGEAAAEAFVRRIMADQSRCVEQLRSVGGD
LDIALTEVPYFDAEVRGGYGLRTMAASLFSPLAARDGASE*

mRNA from alignment at ScGOVlb_24229:237097..239169-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi6864.t1 ID=Gvermi6864.t1|Name=Gvermi6864.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=2073bp|location=Sequence derived from alignment at ScGOVlb_24229:237097..239169- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
CTGCTGGCCGCCTCGTCCACGCCGCGCTTCATCTTCGTCGGCGGCAAGGG
CGGCGTCGGCAAGACCACCACCGCCGCCGCCCTCGCCGTCCATTTTGCCT
CCGCCGGCCTCTCCACCCTCGTCCTGTCTACCGACCCAGCCCACTCACTT
GGCGACGCCCTGCGCGTCGACCTGTCGTCCGGCGACATCGTCCCGCTCCC
GCACCTGGCGCTGCACGCCGTCGAGGTCGACACCTCGGCCGCCGTCGCCC
AGTTCCGCGCCCTGTTGGCCACCCTCAACGACCACTCCGACGACGCCGAC
CAGGCGTGGCGCACCCTGGCCGCCAAGCTCGGCCTCGCCGACTTCTCCGC
CGTGCTGGACACCATCCCGCCCGGCGCCGACGAGCTGCTGGCGCTCGTCA
GCGTCCTCGAACTCGTGCAGTCGCGCCCGCAATTCGCCTTTGACCGCATC
GTCATCGACACCGCCCCCACCGGCCACACCCTCCGCTTCCTCGCCTTCCC
GGACTTTCTGGACAAGTTTCTGCAGCAGGCGCTGGCGCTGCGCGAGAAGC
TGTACGGCGCGCGCGCCATGCTGGGCACCGTCGCCAACATGTTTGTCGGC
AAGAAGACCGACCTCAACGCCGCGCTCACCAACGCCGCCGCCAGAATACA
GGCGTACCGCCAAAAGATGGTGCAGCTCAGCGAACTGTTCCGCGACCCGG
CGCGCACCGAGTTTGTCGTCGTCACCATCGCCACCGTGCTGGCCGTCGAG
GAGAGCAAGAGACTCATCCGCCACCTGTGGGACGACGGCATCTGGGTGCG
CCACGTCGTCGTCAACCAAATCCTGCCGCCGGGCGACGCGCGCACCGTGC
GCGCCTACCTCACGCAGCTGCGAAAGGGGCAGACGCGCGAGATTGCGTTT
GCCACCGAGCGCATTGCGGACGAGTTTGGGCTCGCCGTCACGCTGGTGCC
GCGCTTCGACACGGAGGTGCGCGGCGTGTACGGGCTGTCGGCGCTGGCCG
ACGCCGCCTTCAAGCGCGGCCGCACGCGCAGCTACGGCGCGCTGTTCGAC
GACGAGGCGCGCGCCGACAACGGCGCCGAGTCGCAGTTTGTGTTTGTGGG
CGGCAAGGGCGGCGTGGGCAAGACAAGCATCAGCGCGGCGCTGGGCGTCA
AGCTGGCCGCCGACGGCTTCAAGACGCTGGTGCTGTCGACCGACCCGGCG
CACTCGCTGGCAGACGCGCTGCAGGTGGCGCTGCACGGCGGGGCGCCCGT
GCGCGTGGACGACGCGCGTGGCGAGCTGTTCGCCATGGAGATCGACACGG
AGGGCGCCATCAAGGAGTTCCAGAAGCTCGCCGGCGAGTTTGTGGCCGAG
GGCCGGCGCGGCGCCGGCGTGGACATTGCCAGGAAGCTCGGGCTAGAGGA
GTTTGCCGGGCTGCTGGACAACGCGCCGCCGGGCATCGACGAGCTGGTGG
CGCTGACGCAGGTGATGGAGCTGGTCAAGTTTGGCGACTTTGACCGCGTG
GTGGTGGACACGGCGCCCACGGGCCACACGCTGAGGCTGCTGGCGTTCCC
GGAGTTTGTGGACAAGTTCCTGGGCAAGGTGATCCGGCTGAAGAGGCGGC
TGGACTCGGCGATCGACCGGGTGAGGAGCGTGCTGGGGCGCAAGGACAAC
CGGGAGGACGTGGTGGAGCGCGCGGCCAGCAACATTCAGCGGTTGCGGGA
GAACATGGAGCAGCTGCGGGCGCTGGTGCGCGACAAGCAGCACACGCAGT
TTGCGCTGGTGACGGTGCCGACGGGGCTGGCGATGGCGGAGAGCGAGCGG
CTGGTGCAGTCGCTGCGCCGCGATGAGGTGTGCGTGAAGAACGTGATCAT
CAACCAGGTGATCGGCGAGGCGGCGGCGGAGGCATTTGTGCGGCGCATCA
TGGCGGATCAGAGCCGGTGCGTGGAGCAGCTGCGCTCCGTGGGGGGGGAC
CTGGACATAGCGCTCACGGAGGTGCCGTACTTCGACGCCGAGGTGCGCGG
CGGCTACGGGCTGCGCACCATGGCCGCCAGCCTGTTCTCGCCGCTGGCGG
CGCGCGATGGCGCCAGCGAGTGA

Coding sequence (CDS) from alignment at ScGOVlb_24229:237097..239169-

>Gvermi6864.t1 ID=Gvermi6864.t1|Name=Gvermi6864.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=2073bp|location=Sequence derived from alignment at ScGOVlb_24229:237097..239169- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
CTGCTGGCCGCCTCGTCCACGCCGCGCTTCATCTTCGTCGGCGGCAAGGG
CGGCGTCGGCAAGACCACCACCGCCGCCGCCCTCGCCGTCCATTTTGCCT
CCGCCGGCCTCTCCACCCTCGTCCTGTCTACCGACCCAGCCCACTCACTT
GGCGACGCCCTGCGCGTCGACCTGTCGTCCGGCGACATCGTCCCGCTCCC
GCACCTGGCGCTGCACGCCGTCGAGGTCGACACCTCGGCCGCCGTCGCCC
AGTTCCGCGCCCTGTTGGCCACCCTCAACGACCACTCCGACGACGCCGAC
CAGGCGTGGCGCACCCTGGCCGCCAAGCTCGGCCTCGCCGACTTCTCCGC
CGTGCTGGACACCATCCCGCCCGGCGCCGACGAGCTGCTGGCGCTCGTCA
GCGTCCTCGAACTCGTGCAGTCGCGCCCGCAATTCGCCTTTGACCGCATC
GTCATCGACACCGCCCCCACCGGCCACACCCTCCGCTTCCTCGCCTTCCC
GGACTTTCTGGACAAGTTTCTGCAGCAGGCGCTGGCGCTGCGCGAGAAGC
TGTACGGCGCGCGCGCCATGCTGGGCACCGTCGCCAACATGTTTGTCGGC
AAGAAGACCGACCTCAACGCCGCGCTCACCAACGCCGCCGCCAGAATACA
GGCGTACCGCCAAAAGATGGTGCAGCTCAGCGAACTGTTCCGCGACCCGG
CGCGCACCGAGTTTGTCGTCGTCACCATCGCCACCGTGCTGGCCGTCGAG
GAGAGCAAGAGACTCATCCGCCACCTGTGGGACGACGGCATCTGGGTGCG
CCACGTCGTCGTCAACCAAATCCTGCCGCCGGGCGACGCGCGCACCGTGC
GCGCCTACCTCACGCAGCTGCGAAAGGGGCAGACGCGCGAGATTGCGTTT
GCCACCGAGCGCATTGCGGACGAGTTTGGGCTCGCCGTCACGCTGGTGCC
GCGCTTCGACACGGAGGTGCGCGGCGTGTACGGGCTGTCGGCGCTGGCCG
ACGCCGCCTTCAAGCGCGGCCGCACGCGCAGCTACGGCGCGCTGTTCGAC
GACGAGGCGCGCGCCGACAACGGCGCCGAGTCGCAGTTTGTGTTTGTGGG
CGGCAAGGGCGGCGTGGGCAAGACAAGCATCAGCGCGGCGCTGGGCGTCA
AGCTGGCCGCCGACGGCTTCAAGACGCTGGTGCTGTCGACCGACCCGGCG
CACTCGCTGGCAGACGCGCTGCAGGTGGCGCTGCACGGCGGGGCGCCCGT
GCGCGTGGACGACGCGCGTGGCGAGCTGTTCGCCATGGAGATCGACACGG
AGGGCGCCATCAAGGAGTTCCAGAAGCTCGCCGGCGAGTTTGTGGCCGAG
GGCCGGCGCGGCGCCGGCGTGGACATTGCCAGGAAGCTCGGGCTAGAGGA
GTTTGCCGGGCTGCTGGACAACGCGCCGCCGGGCATCGACGAGCTGGTGG
CGCTGACGCAGGTGATGGAGCTGGTCAAGTTTGGCGACTTTGACCGCGTG
GTGGTGGACACGGCGCCCACGGGCCACACGCTGAGGCTGCTGGCGTTCCC
GGAGTTTGTGGACAAGTTCCTGGGCAAGGTGATCCGGCTGAAGAGGCGGC
TGGACTCGGCGATCGACCGGGTGAGGAGCGTGCTGGGGCGCAAGGACAAC
CGGGAGGACGTGGTGGAGCGCGCGGCCAGCAACATTCAGCGGTTGCGGGA
GAACATGGAGCAGCTGCGGGCGCTGGTGCGCGACAAGCAGCACACGCAGT
TTGCGCTGGTGACGGTGCCGACGGGGCTGGCGATGGCGGAGAGCGAGCGG
CTGGTGCAGTCGCTGCGCCGCGATGAGGTGTGCGTGAAGAACGTGATCAT
CAACCAGGTGATCGGCGAGGCGGCGGCGGAGGCATTTGTGCGGCGCATCA
TGGCGGATCAGAGCCGGTGCGTGGAGCAGCTGCGCTCCGTGGGGGGGGAC
CTGGACATAGCGCTCACGGAGGTGCCGTACTTCGACGCCGAGGTGCGCGG
CGGCTACGGGCTGCGCACCATGGCCGCCAGCCTGTTCTCGCCGCTGGCGG
CGCGCGATGGCGCCAGCGAGTGA