Gvermi6863.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi6863.t1
Unique NameGvermi6863.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length226
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24229contigScGOVlb_24229:236143..236820 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005705426.1
Preferred nameVPS46
PFAMsSnf7
Max annot lvl2759|Eukaryota
KEGG koko:K12197
KEGG Pathwayko04144,ko04217,map04144,map04217
KEGG ModuleM00412
GOsGO:0000003,GO:0000578,GO:0003006,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005770,GO:0006605,GO:0006623,GO:0006810,GO:0006886,GO:0007034,GO:0007275,GO:0007389,GO:0008104,GO:0008150,GO:0009790,GO:0009791,GO:0009793,GO:0009798,GO:0009880,GO:0010154,GO:0012505,GO:0015031,GO:0015833,GO:0016192,GO:0016197,GO:0022414,GO:0031410,GO:0031982,GO:0032501,GO:0032502,GO:0032509,GO:0033036,GO:0033365,GO:0034613,GO:0040007,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0044424,GO:0044444,GO:0044464,GO:0045184,GO:0045324,GO:0046907,GO:0048316,GO:0048608,GO:0048731,GO:0048856,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0061458,GO:0070727,GO:0071702,GO:0071705,GO:0071985,GO:0072594,GO:0072665,GO:0072666,GO:0097708
Evalue2.1e-41
EggNOG OGsCOG5491@1|root,KOG3232@2759|Eukaryota
Descriptionvacuolar transport
COG categoryN
BRITEko00000,ko00001,ko00002,ko04131,ko04147
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi6863Gvermi6863Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_24229 236143..236820 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6863.t1.stop1Gvermi6863.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_24229 236143..236145 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6863.t1.CDS1Gvermi6863.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24229 236143..236820 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6863.t1.exon1Gvermi6863.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24229 236143..236820 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6863.t1.start1Gvermi6863.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_24229 236818..236820 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6863.t1Gvermi6863.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_24229 236143..236820 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi6863.t1 ID=Gvermi6863.t1|Name=Gvermi6863.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=226bp
MGLFSRKAPPPPPPVQRAPPPPTLQEIVFKMRFTSKTIGRQATKSQRQID
IEKRKAKEAMAKNNIAGARIHAENAIRNHNEHLSYLKLQSQLEAVAAKLQ
AQDVRQQVSQSMVAVTRNLDQALGSMDATQIGYTMEQFITQSEDLDLQTK
YMDSAIGESTSSSTPQSQVNGLLQQIADENNLDIGDRLNGYSAPIGQPTA
LPAASKTQDNDLMARLNALQGGARP*
back to top

spliced messenger RNA

>Gvermi6863.t1 ID=Gvermi6863.t1|Name=Gvermi6863.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=678bp|location=Sequence derived from alignment at ScGOVlb_24229:236143..236820- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGCTTGTTCAGCCGGAAGGCCCCCCCGCCGCCGCCGCCCGTGCAGCG
CGCGCCGCCGCCCCCGACGCTGCAGGAAATCGTCTTCAAGATGCGCTTCA
CGTCCAAGACCATCGGGCGCCAGGCCACCAAGTCGCAGCGCCAAATCGAC
ATCGAGAAGCGCAAGGCCAAGGAGGCCATGGCCAAGAACAATATCGCCGG
CGCCAGGATCCACGCCGAGAACGCCATCCGCAACCACAACGAGCACCTGT
CGTACCTCAAGCTGCAGAGCCAGCTCGAGGCCGTGGCCGCCAAGCTGCAG
GCGCAGGACGTGCGCCAGCAGGTGTCGCAGAGCATGGTCGCCGTCACCAG
GAACCTGGACCAGGCGCTGGGCAGCATGGACGCCACCCAGATTGGCTACA
CCATGGAGCAGTTCATCACGCAGAGCGAGGACCTGGACCTGCAGACCAAG
TACATGGACTCGGCCATTGGCGAGTCCACGTCCTCCTCCACCCCGCAGTC
GCAGGTCAACGGCCTGTTGCAGCAGATTGCTGACGAGAACAACCTCGACA
TCGGAGACCGGCTCAACGGCTACAGCGCACCCATCGGGCAGCCTACGGCG
CTGCCCGCGGCATCGAAGACTCAGGACAACGATCTCATGGCGCGCCTCAA
TGCCCTGCAGGGCGGAGCGAGACCGTGA
back to top

protein sequence of Gvermi6863.t1

>Gvermi6863.t1 ID=Gvermi6863.t1|Name=Gvermi6863.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=226bp
MGLFSRKAPPPPPPVQRAPPPPTLQEIVFKMRFTSKTIGRQATKSQRQID
IEKRKAKEAMAKNNIAGARIHAENAIRNHNEHLSYLKLQSQLEAVAAKLQ
AQDVRQQVSQSMVAVTRNLDQALGSMDATQIGYTMEQFITQSEDLDLQTK
YMDSAIGESTSSSTPQSQVNGLLQQIADENNLDIGDRLNGYSAPIGQPTA
LPAASKTQDNDLMARLNALQGGARP*
back to top

mRNA from alignment at ScGOVlb_24229:236143..236820-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi6863.t1 ID=Gvermi6863.t1|Name=Gvermi6863.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=678bp|location=Sequence derived from alignment at ScGOVlb_24229:236143..236820- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGGCTTGTTCAGCCGGAAGGCCCCCCCGCCGCCGCCGCCCGTGCAGCG
CGCGCCGCCGCCCCCGACGCTGCAGGAAATCGTCTTCAAGATGCGCTTCA
CGTCCAAGACCATCGGGCGCCAGGCCACCAAGTCGCAGCGCCAAATCGAC
ATCGAGAAGCGCAAGGCCAAGGAGGCCATGGCCAAGAACAATATCGCCGG
CGCCAGGATCCACGCCGAGAACGCCATCCGCAACCACAACGAGCACCTGT
CGTACCTCAAGCTGCAGAGCCAGCTCGAGGCCGTGGCCGCCAAGCTGCAG
GCGCAGGACGTGCGCCAGCAGGTGTCGCAGAGCATGGTCGCCGTCACCAG
GAACCTGGACCAGGCGCTGGGCAGCATGGACGCCACCCAGATTGGCTACA
CCATGGAGCAGTTCATCACGCAGAGCGAGGACCTGGACCTGCAGACCAAG
TACATGGACTCGGCCATTGGCGAGTCCACGTCCTCCTCCACCCCGCAGTC
GCAGGTCAACGGCCTGTTGCAGCAGATTGCTGACGAGAACAACCTCGACA
TCGGAGACCGGCTCAACGGCTACAGCGCACCCATCGGGCAGCCTACGGCG
CTGCCCGCGGCATCGAAGACTCAGGACAACGATCTCATGGCGCGCCTCAA
TGCCCTGCAGGGCGGAGCGAGACCGTGA
back to top

Coding sequence (CDS) from alignment at ScGOVlb_24229:236143..236820-

>Gvermi6863.t1 ID=Gvermi6863.t1|Name=Gvermi6863.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=678bp|location=Sequence derived from alignment at ScGOVlb_24229:236143..236820- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGGCTTGTTCAGCCGGAAGGCCCCCCCGCCGCCGCCGCCCGTGCAGCG
CGCGCCGCCGCCCCCGACGCTGCAGGAAATCGTCTTCAAGATGCGCTTCA
CGTCCAAGACCATCGGGCGCCAGGCCACCAAGTCGCAGCGCCAAATCGAC
ATCGAGAAGCGCAAGGCCAAGGAGGCCATGGCCAAGAACAATATCGCCGG
CGCCAGGATCCACGCCGAGAACGCCATCCGCAACCACAACGAGCACCTGT
CGTACCTCAAGCTGCAGAGCCAGCTCGAGGCCGTGGCCGCCAAGCTGCAG
GCGCAGGACGTGCGCCAGCAGGTGTCGCAGAGCATGGTCGCCGTCACCAG
GAACCTGGACCAGGCGCTGGGCAGCATGGACGCCACCCAGATTGGCTACA
CCATGGAGCAGTTCATCACGCAGAGCGAGGACCTGGACCTGCAGACCAAG
TACATGGACTCGGCCATTGGCGAGTCCACGTCCTCCTCCACCCCGCAGTC
GCAGGTCAACGGCCTGTTGCAGCAGATTGCTGACGAGAACAACCTCGACA
TCGGAGACCGGCTCAACGGCTACAGCGCACCCATCGGGCAGCCTACGGCG
CTGCCCGCGGCATCGAAGACTCAGGACAACGATCTCATGGCGCGCCTCAA
TGCCCTGCAGGGCGGAGCGAGACCGTGA
back to top