Gvermi6861.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi6861.t1
Unique Name	Gvermi6861.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	555

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_24229	contig	ScGOVlb_24229:232457..234121 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	157072.XP_008873380.1
Preferred name	G6PDH
PFAMs	G6PD_C,G6PD_N
Max annot lvl	2759\|Eukaryota
KEGG rclass	RC00001,RC00066
KEGG ko	ko:K00036
KEGG Reaction	R00835,R02736,R10907
KEGG Pathway	ko00030,ko00480,ko01100,ko01110,ko01120,ko01130,ko01200,ko05230,map00030,map00480,map01100,map01110,map01120,map01130,map01200,map05230
KEGG Module	M00004,M00006,M00008
GOs	GO:0003674,GO:0003824,GO:0004345,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0005996,GO:0006006,GO:0006081,GO:0006098,GO:0006139,GO:0006725,GO:0006732,GO:0006733,GO:0006739,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009051,GO:0009117,GO:0009507,GO:0009536,GO:0009987,GO:0010035,GO:0010038,GO:0016491,GO:0016614,GO:0016616,GO:0019318,GO:0019362,GO:0019637,GO:0019682,GO:0019693,GO:0034641,GO:0042221,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0046496,GO:0046686,GO:0050896,GO:0051156,GO:0051186,GO:0055086,GO:0055114,GO:0071704,GO:0072524,GO:1901135,GO:1901360,GO:1901564
Evalue	7.56e-196
EggNOG OGs	COG0364@1\|root,KOG0563@2759\|Eukaryota
EC	1.1.1.363,1.1.1.49
Description	glucose-6-phosphate dehydrogenase activity
COG category	G
BRITE	ko00000,ko00001,ko00002,ko01000,ko04147

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi6861	Gvermi6861	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_24229 232457..234121 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6861.t1.stop1	Gvermi6861.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_24229 232457..232459 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6861.t1.CDS1	Gvermi6861.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_24229 232457..234121 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6861.t1.exon1	Gvermi6861.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_24229 232457..234121 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6861.t1.start1	Gvermi6861.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_24229 234119..234121 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6861.t1	Gvermi6861.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_24229 232457..234121 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_24229:232457..234121-
coding sequence from alignment at ScGOVlb_24229:232457..234121-

mRNA sequence

>Gvermi6861.t1 ID=Gvermi6861.t1|Name=Gvermi6861.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=555bp
MLKDIVVVDSEAHSQHNNNSAMDAPRENGKHQSDDTHDVHDTKGDYYKCE
YRSDALTVFVIGASGDLAKKKTYPSLFALYRFKYLPDDFTIVGYARSAKS
DDDFRSSIKSYLSGAEEQVKDDFLSHCLYRNGDAYDDEHAIGKVSEEMSH
IESKTGKTVNRLFYFAIPPVVFVSAAAALKKKANTHDGWSRFIVEKPFGS
DLQSFEELNKDMSAVLEEKEMYRIDHYIGKEAVQNLLIMRFANSTFEPLW
NNKYIDSVIISFKEDFGTKGRGGYFDKNGMIRDVVQNHIMQIVTMFAMES
PVRPNGDFIRDEKVKVLQAIPAIKKEDCITGQYVADDEGREPSYTDDDGV
PDDSKTETGAAMVMYINNSRWEGVPFILRAGKALNETKSEIRVQFKKSPG
SSLMFGDDSYGDGYGTDVEAVERNELVIRLKPDEAIYLKMNIKSPGLSGD
PVVSELDLTYKTRFPDQFSQLPDAYTRLILQVLRGDAATFVRHDELREAW
RIFTPLLHSIDDGEIEPLKYKAFSRGPKEWDDLCTQHGFKYGGDAYHWKR
RGAK*

spliced messenger RNA

>Gvermi6861.t1 ID=Gvermi6861.t1|Name=Gvermi6861.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1665bp|location=Sequence derived from alignment at ScGOVlb_24229:232457..234121- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTCAAGGATATCGTCGTCGTGGACTCCGAAGCACATTCGCAGCACAA
CAACAACAGCGCTATGGACGCGCCCCGGGAGAATGGCAAGCATCAGTCCG
ACGACACGCACGACGTTCATGACACCAAGGGCGACTACTACAAGTGCGAG
TACCGGAGTGATGCGCTCACCGTCTTTGTCATCGGCGCCTCTGGCGACCT
GGCAAAGAAAAAGACGTACCCGTCCCTTTTTGCCTTGTACCGCTTCAAGT
ACTTGCCCGACGACTTCACCATCGTCGGGTACGCGCGATCTGCAAAGAGC
GACGACGACTTCAGAAGCTCCATCAAGTCGTATCTCAGCGGCGCTGAAGA
ACAGGTCAAGGACGACTTCCTCAGTCACTGCCTGTACCGCAATGGCGATG
CGTACGACGATGAACACGCCATCGGCAAGGTGTCCGAGGAGATGAGCCAC
ATCGAGAGCAAGACAGGCAAGACTGTCAACCGACTGTTCTACTTTGCCAT
CCCGCCCGTGGTGTTCGTTTCCGCTGCGGCGGCCTTGAAGAAGAAGGCCA
ACACGCACGACGGCTGGTCCAGATTCATTGTGGAAAAGCCGTTCGGCTCG
GATCTGCAATCGTTTGAAGAGCTCAACAAGGACATGTCGGCCGTGCTGGA
GGAGAAGGAAATGTATCGCATCGACCACTACATTGGCAAGGAAGCCGTGC
AGAACCTGTTGATCATGCGCTTTGCAAACAGCACGTTCGAGCCTCTGTGG
AACAACAAGTACATCGATTCGGTCATCATCTCCTTCAAAGAGGACTTTGG
CACCAAGGGGCGTGGCGGATACTTTGACAAGAACGGCATGATTCGAGATG
TGGTTCAGAACCACATCATGCAGATCGTCACCATGTTTGCCATGGAATCG
CCCGTCAGACCGAACGGCGACTTCATTCGAGACGAAAAGGTCAAGGTGCT
GCAGGCAATTCCAGCCATCAAAAAGGAAGACTGTATCACGGGCCAGTACG
TGGCCGACGACGAGGGCCGCGAACCATCTTACACTGACGATGACGGCGTG
CCGGATGACTCCAAGACTGAGACGGGTGCAGCCATGGTGATGTACATCAA
TAACTCGCGATGGGAAGGCGTTCCGTTTATTCTGCGCGCCGGTAAGGCTC
TCAATGAGACCAAGAGTGAAATTCGGGTGCAGTTCAAGAAGAGCCCCGGC
AGCAGTCTCATGTTTGGCGACGACAGTTACGGCGACGGGTACGGGACCGA
CGTGGAGGCTGTGGAGAGGAACGAGTTGGTGATTCGCCTCAAGCCGGATG
AGGCGATCTACCTCAAGATGAACATCAAGTCGCCTGGTCTAAGCGGTGAT
CCGGTGGTTTCGGAACTTGATCTGACGTACAAGACCAGGTTCCCAGACCA
GTTCTCGCAGCTACCGGACGCATACACGCGGCTGATTTTGCAGGTGCTGA
GGGGCGACGCGGCCACGTTTGTGAGACATGATGAACTTCGAGAGGCTTGG
AGAATCTTCACACCGTTGCTGCACTCGATTGACGATGGCGAGATTGAGCC
GCTCAAGTACAAGGCGTTCAGCAGAGGGCCCAAGGAGTGGGACGACCTTT
GCACGCAGCATGGGTTCAAGTACGGCGGCGACGCGTACCACTGGAAGAGG
CGAGGCGCCAAGTAG

protein sequence of Gvermi6861.t1

>Gvermi6861.t1 ID=Gvermi6861.t1|Name=Gvermi6861.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=555bp
MLKDIVVVDSEAHSQHNNNSAMDAPRENGKHQSDDTHDVHDTKGDYYKCE
YRSDALTVFVIGASGDLAKKKTYPSLFALYRFKYLPDDFTIVGYARSAKS
DDDFRSSIKSYLSGAEEQVKDDFLSHCLYRNGDAYDDEHAIGKVSEEMSH
IESKTGKTVNRLFYFAIPPVVFVSAAAALKKKANTHDGWSRFIVEKPFGS
DLQSFEELNKDMSAVLEEKEMYRIDHYIGKEAVQNLLIMRFANSTFEPLW
NNKYIDSVIISFKEDFGTKGRGGYFDKNGMIRDVVQNHIMQIVTMFAMES
PVRPNGDFIRDEKVKVLQAIPAIKKEDCITGQYVADDEGREPSYTDDDGV
PDDSKTETGAAMVMYINNSRWEGVPFILRAGKALNETKSEIRVQFKKSPG
SSLMFGDDSYGDGYGTDVEAVERNELVIRLKPDEAIYLKMNIKSPGLSGD
PVVSELDLTYKTRFPDQFSQLPDAYTRLILQVLRGDAATFVRHDELREAW
RIFTPLLHSIDDGEIEPLKYKAFSRGPKEWDDLCTQHGFKYGGDAYHWKR
RGAK*

mRNA from alignment at ScGOVlb_24229:232457..234121-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi6861.t1 ID=Gvermi6861.t1|Name=Gvermi6861.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1665bp|location=Sequence derived from alignment at ScGOVlb_24229:232457..234121- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCTCAAGGATATCGTCGTCGTGGACTCCGAAGCACATTCGCAGCACAA
CAACAACAGCGCTATGGACGCGCCCCGGGAGAATGGCAAGCATCAGTCCG
ACGACACGCACGACGTTCATGACACCAAGGGCGACTACTACAAGTGCGAG
TACCGGAGTGATGCGCTCACCGTCTTTGTCATCGGCGCCTCTGGCGACCT
GGCAAAGAAAAAGACGTACCCGTCCCTTTTTGCCTTGTACCGCTTCAAGT
ACTTGCCCGACGACTTCACCATCGTCGGGTACGCGCGATCTGCAAAGAGC
GACGACGACTTCAGAAGCTCCATCAAGTCGTATCTCAGCGGCGCTGAAGA
ACAGGTCAAGGACGACTTCCTCAGTCACTGCCTGTACCGCAATGGCGATG
CGTACGACGATGAACACGCCATCGGCAAGGTGTCCGAGGAGATGAGCCAC
ATCGAGAGCAAGACAGGCAAGACTGTCAACCGACTGTTCTACTTTGCCAT
CCCGCCCGTGGTGTTCGTTTCCGCTGCGGCGGCCTTGAAGAAGAAGGCCA
ACACGCACGACGGCTGGTCCAGATTCATTGTGGAAAAGCCGTTCGGCTCG
GATCTGCAATCGTTTGAAGAGCTCAACAAGGACATGTCGGCCGTGCTGGA
GGAGAAGGAAATGTATCGCATCGACCACTACATTGGCAAGGAAGCCGTGC
AGAACCTGTTGATCATGCGCTTTGCAAACAGCACGTTCGAGCCTCTGTGG
AACAACAAGTACATCGATTCGGTCATCATCTCCTTCAAAGAGGACTTTGG
CACCAAGGGGCGTGGCGGATACTTTGACAAGAACGGCATGATTCGAGATG
TGGTTCAGAACCACATCATGCAGATCGTCACCATGTTTGCCATGGAATCG
CCCGTCAGACCGAACGGCGACTTCATTCGAGACGAAAAGGTCAAGGTGCT
GCAGGCAATTCCAGCCATCAAAAAGGAAGACTGTATCACGGGCCAGTACG
TGGCCGACGACGAGGGCCGCGAACCATCTTACACTGACGATGACGGCGTG
CCGGATGACTCCAAGACTGAGACGGGTGCAGCCATGGTGATGTACATCAA
TAACTCGCGATGGGAAGGCGTTCCGTTTATTCTGCGCGCCGGTAAGGCTC
TCAATGAGACCAAGAGTGAAATTCGGGTGCAGTTCAAGAAGAGCCCCGGC
AGCAGTCTCATGTTTGGCGACGACAGTTACGGCGACGGGTACGGGACCGA
CGTGGAGGCTGTGGAGAGGAACGAGTTGGTGATTCGCCTCAAGCCGGATG
AGGCGATCTACCTCAAGATGAACATCAAGTCGCCTGGTCTAAGCGGTGAT
CCGGTGGTTTCGGAACTTGATCTGACGTACAAGACCAGGTTCCCAGACCA
GTTCTCGCAGCTACCGGACGCATACACGCGGCTGATTTTGCAGGTGCTGA
GGGGCGACGCGGCCACGTTTGTGAGACATGATGAACTTCGAGAGGCTTGG
AGAATCTTCACACCGTTGCTGCACTCGATTGACGATGGCGAGATTGAGCC
GCTCAAGTACAAGGCGTTCAGCAGAGGGCCCAAGGAGTGGGACGACCTTT
GCACGCAGCATGGGTTCAAGTACGGCGGCGACGCGTACCACTGGAAGAGG
CGAGGCGCCAAGTAG

Coding sequence (CDS) from alignment at ScGOVlb_24229:232457..234121-

>Gvermi6861.t1 ID=Gvermi6861.t1|Name=Gvermi6861.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1665bp|location=Sequence derived from alignment at ScGOVlb_24229:232457..234121- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCTCAAGGATATCGTCGTCGTGGACTCCGAAGCACATTCGCAGCACAA
CAACAACAGCGCTATGGACGCGCCCCGGGAGAATGGCAAGCATCAGTCCG
ACGACACGCACGACGTTCATGACACCAAGGGCGACTACTACAAGTGCGAG
TACCGGAGTGATGCGCTCACCGTCTTTGTCATCGGCGCCTCTGGCGACCT
GGCAAAGAAAAAGACGTACCCGTCCCTTTTTGCCTTGTACCGCTTCAAGT
ACTTGCCCGACGACTTCACCATCGTCGGGTACGCGCGATCTGCAAAGAGC
GACGACGACTTCAGAAGCTCCATCAAGTCGTATCTCAGCGGCGCTGAAGA
ACAGGTCAAGGACGACTTCCTCAGTCACTGCCTGTACCGCAATGGCGATG
CGTACGACGATGAACACGCCATCGGCAAGGTGTCCGAGGAGATGAGCCAC
ATCGAGAGCAAGACAGGCAAGACTGTCAACCGACTGTTCTACTTTGCCAT
CCCGCCCGTGGTGTTCGTTTCCGCTGCGGCGGCCTTGAAGAAGAAGGCCA
ACACGCACGACGGCTGGTCCAGATTCATTGTGGAAAAGCCGTTCGGCTCG
GATCTGCAATCGTTTGAAGAGCTCAACAAGGACATGTCGGCCGTGCTGGA
GGAGAAGGAAATGTATCGCATCGACCACTACATTGGCAAGGAAGCCGTGC
AGAACCTGTTGATCATGCGCTTTGCAAACAGCACGTTCGAGCCTCTGTGG
AACAACAAGTACATCGATTCGGTCATCATCTCCTTCAAAGAGGACTTTGG
CACCAAGGGGCGTGGCGGATACTTTGACAAGAACGGCATGATTCGAGATG
TGGTTCAGAACCACATCATGCAGATCGTCACCATGTTTGCCATGGAATCG
CCCGTCAGACCGAACGGCGACTTCATTCGAGACGAAAAGGTCAAGGTGCT
GCAGGCAATTCCAGCCATCAAAAAGGAAGACTGTATCACGGGCCAGTACG
TGGCCGACGACGAGGGCCGCGAACCATCTTACACTGACGATGACGGCGTG
CCGGATGACTCCAAGACTGAGACGGGTGCAGCCATGGTGATGTACATCAA
TAACTCGCGATGGGAAGGCGTTCCGTTTATTCTGCGCGCCGGTAAGGCTC
TCAATGAGACCAAGAGTGAAATTCGGGTGCAGTTCAAGAAGAGCCCCGGC
AGCAGTCTCATGTTTGGCGACGACAGTTACGGCGACGGGTACGGGACCGA
CGTGGAGGCTGTGGAGAGGAACGAGTTGGTGATTCGCCTCAAGCCGGATG
AGGCGATCTACCTCAAGATGAACATCAAGTCGCCTGGTCTAAGCGGTGAT
CCGGTGGTTTCGGAACTTGATCTGACGTACAAGACCAGGTTCCCAGACCA
GTTCTCGCAGCTACCGGACGCATACACGCGGCTGATTTTGCAGGTGCTGA
GGGGCGACGCGGCCACGTTTGTGAGACATGATGAACTTCGAGAGGCTTGG
AGAATCTTCACACCGTTGCTGCACTCGATTGACGATGGCGAGATTGAGCC
GCTCAAGTACAAGGCGTTCAGCAGAGGGCCCAAGGAGTGGGACGACCTTT
GCACGCAGCATGGGTTCAAGTACGGCGGCGACGCGTACCACTGGAAGAGG
CGAGGCGCCAAGTAG