Gvermi6859.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi6859.t1
Unique NameGvermi6859.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length456
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24229contigScGOVlb_24229:229840..231207 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005706536.1
Preferred nameCDS1
PFAMsCTP_transf_1
Max annot lvl2759|Eukaryota
KEGG rclassRC00002
KEGG koko:K00981,ko:K08818
KEGG ReactionR01799
KEGG Pathwayko00564,ko01100,ko01110,ko04070,map00564,map01100,map01110,map04070
KEGG ModuleM00093
GOsGO:0000003,GO:0003006,GO:0003674,GO:0003824,GO:0004142,GO:0004605,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005783,GO:0005789,GO:0006139,GO:0006220,GO:0006221,GO:0006575,GO:0006629,GO:0006644,GO:0006650,GO:0006655,GO:0006656,GO:0006657,GO:0006658,GO:0006661,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0007154,GO:0007165,GO:0007186,GO:0007275,GO:0007276,GO:0007281,GO:0007283,GO:0007286,GO:0007291,GO:0007349,GO:0007602,GO:0007603,GO:0008150,GO:0008152,GO:0008610,GO:0008654,GO:0009058,GO:0009117,GO:0009165,GO:0009266,GO:0009314,GO:0009416,GO:0009581,GO:0009582,GO:0009583,GO:0009584,GO:0009605,GO:0009628,GO:0009653,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0010511,GO:0010513,GO:0010562,GO:0010866,GO:0010868,GO:0010883,GO:0012505,GO:0016020,GO:0016021,GO:0016024,GO:0016056,GO:0016740,GO:0016772,GO:0016779,GO:0016780,GO:0017169,GO:0018130,GO:0019216,GO:0019220,GO:0019222,GO:0019438,GO:0019637,GO:0019866,GO:0019953,GO:0022412,GO:0022414,GO:0023052,GO:0030133,GO:0030154,GO:0031090,GO:0031224,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031410,GO:0031966,GO:0031967,GO:0031975,GO:0031982,GO:0031984,GO:0032501,GO:0032502,GO:0032504,GO:0032879,GO:0034641,GO:0034654,GO:0040007,GO:0040011,GO:0042175,GO:0042330,GO:0043052,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044271,GO:0044281,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0045017,GO:0045833,GO:0045834,GO:0045937,GO:0046341,GO:0046470,GO:0046471,GO:0046474,GO:0046483,GO:0046486,GO:0046488,GO:0046889,GO:0046890,GO:0048232,GO:0048468,GO:0048515,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048589,GO:0048609,GO:0048646,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051055,GO:0051174,GO:0051606,GO:0051704,GO:0051716,GO:0055086,GO:0065007,GO:0065008,GO:0070085,GO:0070319,GO:0070382,GO:0070567,GO:0071071,GO:0071073,GO:0071214,GO:0071478,GO:0071482,GO:0071704,GO:0072527,GO:0072528,GO:0080090,GO:0080186,GO:0090207,GO:0090209,GO:0090407,GO:0097164,GO:0097708,GO:0098827,GO:0099503,GO:0104004,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1903725,GO:1903727,GO:1905952
Evalue2.43e-116
EggNOG OGsCOG0575@1|root,KOG1440@2759|Eukaryota
EC2.7.11.22,2.7.7.41
Descriptionphosphatidate cytidylyltransferase activity
COG categoryI
BRITEko00000,ko00001,ko00002,ko01000,ko01001,ko03041
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi6859Gvermi6859Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_24229 229840..231207 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6859.t1.stop1Gvermi6859.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_24229 229840..229842 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6859.t1.CDS1Gvermi6859.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24229 229840..231207 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6859.t1.exon1Gvermi6859.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24229 229840..231207 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6859.t1.start1Gvermi6859.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_24229 231205..231207 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6859.t1Gvermi6859.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_24229 229840..231207 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi6859.t1 ID=Gvermi6859.t1|Name=Gvermi6859.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=456bp
MVLTRRGAAATTAQPDDVLSSETSVAPANAPADPARPESTESTDRSADAK
SVAPAPKSKSDFLARLLSGVLLTAFFVAVVRAGQLPVAVAVILMEIGMFN
EILRLGLPVARENRIPWWRTIGWYFFFALQFFLYGKLVLSHFHARGLPFT
LHPAYQYAMRHHTFLSFCMYCAGFVGFVISLRQNQYHFQFTYFGRALVAL
LLVVVQAHFLILNISHGLIWFILPCWLIIVNDSFGYFCGRLFGRHSLTPL
SPKKTWEGYIGAGICTMIAAFFLSGALSAYPSLICPKYDFDDCNILCPPA
SCDPIPDAFVFRTAEFVLIPGLSKTLSFSYRPAQLHAIALGLFAAVIAPF
GGFFASGAKRAFKVKDFGSVLPGHGGVTDRVDCQLMMAVFTNVYLINFVR
VNFEGSPDVGKLMALVAELSSDEQVELITEIYNRLHRKGISNILANISNV
TVPSG*
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spliced messenger RNA

>Gvermi6859.t1 ID=Gvermi6859.t1|Name=Gvermi6859.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1368bp|location=Sequence derived from alignment at ScGOVlb_24229:229840..231207- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTGCTCACCAGACGAGGCGCCGCCGCCACCACCGCGCAGCCCGATGA
CGTCCTCTCGTCGGAGACGTCCGTCGCCCCCGCCAATGCGCCCGCCGATC
CCGCGCGCCCTGAGTCCACTGAGTCCACCGACCGCAGCGCCGACGCTAAA
TCCGTCGCCCCCGCGCCGAAGAGCAAGTCCGACTTCTTGGCCCGCCTCCT
GTCGGGCGTCCTTCTCACCGCCTTCTTCGTCGCCGTCGTCAGAGCCGGCC
AGCTGCCCGTCGCCGTCGCCGTCATTTTGATGGAGATTGGAATGTTCAAT
GAGATCTTGCGCCTTGGGCTCCCCGTCGCGAGGGAGAACCGCATTCCCTG
GTGGCGAACTATCGGCTGGTACTTTTTCTTTGCCTTGCAGTTCTTTCTGT
ACGGAAAGCTCGTCTTGTCGCACTTCCACGCCAGAGGGCTCCCCTTCACG
TTGCATCCGGCCTATCAGTACGCCATGCGTCACCACACTTTCCTGTCCTT
CTGCATGTACTGTGCGGGCTTTGTTGGCTTTGTCATATCCCTGCGCCAGA
ACCAGTACCACTTTCAGTTCACGTATTTCGGCCGCGCCTTGGTCGCCTTA
CTTCTGGTCGTCGTGCAAGCCCATTTCTTGATTCTCAACATATCGCACGG
ATTGATTTGGTTCATACTTCCTTGCTGGCTCATCATTGTCAACGATTCCT
TCGGATACTTTTGCGGCCGTTTGTTTGGCAGGCACTCGCTCACGCCCCTG
TCCCCAAAGAAGACGTGGGAAGGGTACATTGGTGCGGGCATATGCACCAT
GATAGCTGCCTTCTTTCTCTCTGGCGCTCTGTCGGCGTACCCCTCTCTGA
TTTGTCCCAAGTATGATTTCGACGACTGCAATATCTTGTGCCCCCCCGCC
TCGTGCGATCCCATTCCGGACGCCTTCGTCTTTCGCACGGCCGAGTTTGT
TCTTATTCCCGGTCTCTCCAAGACCCTCTCTTTCTCCTATCGTCCGGCAC
AGTTGCACGCCATTGCTTTAGGACTTTTCGCCGCTGTGATTGCTCCGTTT
GGAGGCTTCTTTGCCTCTGGAGCAAAGCGCGCGTTCAAGGTGAAGGACTT
TGGAAGCGTGCTTCCTGGGCACGGAGGCGTCACCGACCGTGTCGATTGCC
AGCTCATGATGGCTGTATTTACCAACGTGTACTTGATCAACTTTGTGCGC
GTTAACTTTGAGGGCTCTCCCGACGTCGGAAAGTTGATGGCTTTGGTGGC
CGAACTCAGCTCTGATGAGCAGGTGGAACTTATCACTGAAATCTACAATC
GATTGCACAGAAAGGGCATCTCCAACATTCTCGCAAATATATCGAATGTG
ACTGTCCCGTCTGGTTAA
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protein sequence of Gvermi6859.t1

>Gvermi6859.t1 ID=Gvermi6859.t1|Name=Gvermi6859.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=456bp
MVLTRRGAAATTAQPDDVLSSETSVAPANAPADPARPESTESTDRSADAK
SVAPAPKSKSDFLARLLSGVLLTAFFVAVVRAGQLPVAVAVILMEIGMFN
EILRLGLPVARENRIPWWRTIGWYFFFALQFFLYGKLVLSHFHARGLPFT
LHPAYQYAMRHHTFLSFCMYCAGFVGFVISLRQNQYHFQFTYFGRALVAL
LLVVVQAHFLILNISHGLIWFILPCWLIIVNDSFGYFCGRLFGRHSLTPL
SPKKTWEGYIGAGICTMIAAFFLSGALSAYPSLICPKYDFDDCNILCPPA
SCDPIPDAFVFRTAEFVLIPGLSKTLSFSYRPAQLHAIALGLFAAVIAPF
GGFFASGAKRAFKVKDFGSVLPGHGGVTDRVDCQLMMAVFTNVYLINFVR
VNFEGSPDVGKLMALVAELSSDEQVELITEIYNRLHRKGISNILANISNV
TVPSG*
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mRNA from alignment at ScGOVlb_24229:229840..231207-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi6859.t1 ID=Gvermi6859.t1|Name=Gvermi6859.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1368bp|location=Sequence derived from alignment at ScGOVlb_24229:229840..231207- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGTGCTCACCAGACGAGGCGCCGCCGCCACCACCGCGCAGCCCGATGA
CGTCCTCTCGTCGGAGACGTCCGTCGCCCCCGCCAATGCGCCCGCCGATC
CCGCGCGCCCTGAGTCCACTGAGTCCACCGACCGCAGCGCCGACGCTAAA
TCCGTCGCCCCCGCGCCGAAGAGCAAGTCCGACTTCTTGGCCCGCCTCCT
GTCGGGCGTCCTTCTCACCGCCTTCTTCGTCGCCGTCGTCAGAGCCGGCC
AGCTGCCCGTCGCCGTCGCCGTCATTTTGATGGAGATTGGAATGTTCAAT
GAGATCTTGCGCCTTGGGCTCCCCGTCGCGAGGGAGAACCGCATTCCCTG
GTGGCGAACTATCGGCTGGTACTTTTTCTTTGCCTTGCAGTTCTTTCTGT
ACGGAAAGCTCGTCTTGTCGCACTTCCACGCCAGAGGGCTCCCCTTCACG
TTGCATCCGGCCTATCAGTACGCCATGCGTCACCACACTTTCCTGTCCTT
CTGCATGTACTGTGCGGGCTTTGTTGGCTTTGTCATATCCCTGCGCCAGA
ACCAGTACCACTTTCAGTTCACGTATTTCGGCCGCGCCTTGGTCGCCTTA
CTTCTGGTCGTCGTGCAAGCCCATTTCTTGATTCTCAACATATCGCACGG
ATTGATTTGGTTCATACTTCCTTGCTGGCTCATCATTGTCAACGATTCCT
TCGGATACTTTTGCGGCCGTTTGTTTGGCAGGCACTCGCTCACGCCCCTG
TCCCCAAAGAAGACGTGGGAAGGGTACATTGGTGCGGGCATATGCACCAT
GATAGCTGCCTTCTTTCTCTCTGGCGCTCTGTCGGCGTACCCCTCTCTGA
TTTGTCCCAAGTATGATTTCGACGACTGCAATATCTTGTGCCCCCCCGCC
TCGTGCGATCCCATTCCGGACGCCTTCGTCTTTCGCACGGCCGAGTTTGT
TCTTATTCCCGGTCTCTCCAAGACCCTCTCTTTCTCCTATCGTCCGGCAC
AGTTGCACGCCATTGCTTTAGGACTTTTCGCCGCTGTGATTGCTCCGTTT
GGAGGCTTCTTTGCCTCTGGAGCAAAGCGCGCGTTCAAGGTGAAGGACTT
TGGAAGCGTGCTTCCTGGGCACGGAGGCGTCACCGACCGTGTCGATTGCC
AGCTCATGATGGCTGTATTTACCAACGTGTACTTGATCAACTTTGTGCGC
GTTAACTTTGAGGGCTCTCCCGACGTCGGAAAGTTGATGGCTTTGGTGGC
CGAACTCAGCTCTGATGAGCAGGTGGAACTTATCACTGAAATCTACAATC
GATTGCACAGAAAGGGCATCTCCAACATTCTCGCAAATATATCGAATGTG
ACTGTCCCGTCTGGTTAA
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Coding sequence (CDS) from alignment at ScGOVlb_24229:229840..231207-

>Gvermi6859.t1 ID=Gvermi6859.t1|Name=Gvermi6859.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1368bp|location=Sequence derived from alignment at ScGOVlb_24229:229840..231207- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGTGCTCACCAGACGAGGCGCCGCCGCCACCACCGCGCAGCCCGATGA
CGTCCTCTCGTCGGAGACGTCCGTCGCCCCCGCCAATGCGCCCGCCGATC
CCGCGCGCCCTGAGTCCACTGAGTCCACCGACCGCAGCGCCGACGCTAAA
TCCGTCGCCCCCGCGCCGAAGAGCAAGTCCGACTTCTTGGCCCGCCTCCT
GTCGGGCGTCCTTCTCACCGCCTTCTTCGTCGCCGTCGTCAGAGCCGGCC
AGCTGCCCGTCGCCGTCGCCGTCATTTTGATGGAGATTGGAATGTTCAAT
GAGATCTTGCGCCTTGGGCTCCCCGTCGCGAGGGAGAACCGCATTCCCTG
GTGGCGAACTATCGGCTGGTACTTTTTCTTTGCCTTGCAGTTCTTTCTGT
ACGGAAAGCTCGTCTTGTCGCACTTCCACGCCAGAGGGCTCCCCTTCACG
TTGCATCCGGCCTATCAGTACGCCATGCGTCACCACACTTTCCTGTCCTT
CTGCATGTACTGTGCGGGCTTTGTTGGCTTTGTCATATCCCTGCGCCAGA
ACCAGTACCACTTTCAGTTCACGTATTTCGGCCGCGCCTTGGTCGCCTTA
CTTCTGGTCGTCGTGCAAGCCCATTTCTTGATTCTCAACATATCGCACGG
ATTGATTTGGTTCATACTTCCTTGCTGGCTCATCATTGTCAACGATTCCT
TCGGATACTTTTGCGGCCGTTTGTTTGGCAGGCACTCGCTCACGCCCCTG
TCCCCAAAGAAGACGTGGGAAGGGTACATTGGTGCGGGCATATGCACCAT
GATAGCTGCCTTCTTTCTCTCTGGCGCTCTGTCGGCGTACCCCTCTCTGA
TTTGTCCCAAGTATGATTTCGACGACTGCAATATCTTGTGCCCCCCCGCC
TCGTGCGATCCCATTCCGGACGCCTTCGTCTTTCGCACGGCCGAGTTTGT
TCTTATTCCCGGTCTCTCCAAGACCCTCTCTTTCTCCTATCGTCCGGCAC
AGTTGCACGCCATTGCTTTAGGACTTTTCGCCGCTGTGATTGCTCCGTTT
GGAGGCTTCTTTGCCTCTGGAGCAAAGCGCGCGTTCAAGGTGAAGGACTT
TGGAAGCGTGCTTCCTGGGCACGGAGGCGTCACCGACCGTGTCGATTGCC
AGCTCATGATGGCTGTATTTACCAACGTGTACTTGATCAACTTTGTGCGC
GTTAACTTTGAGGGCTCTCCCGACGTCGGAAAGTTGATGGCTTTGGTGGC
CGAACTCAGCTCTGATGAGCAGGTGGAACTTATCACTGAAATCTACAATC
GATTGCACAGAAAGGGCATCTCCAACATTCTCGCAAATATATCGAATGTG
ACTGTCCCGTCTGGTTAA
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