Gvermi6856.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi6856.t1
Unique NameGvermi6856.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length398
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24229contigScGOVlb_24229:213819..215012 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005705443.1
Preferred nameLEO1
PFAMsLeo1
Max annot lvl2759|Eukaryota
KEGG koko:K15177
GOsGO:0000428,GO:0000988,GO:0000989,GO:0000993,GO:0001076,GO:0001098,GO:0001099,GO:0001501,GO:0001650,GO:0001672,GO:0001704,GO:0001706,GO:0001711,GO:0002682,GO:0002683,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005813,GO:0005815,GO:0005829,GO:0005856,GO:0006139,GO:0006282,GO:0006325,GO:0006351,GO:0006353,GO:0006354,GO:0006355,GO:0006356,GO:0006357,GO:0006366,GO:0006368,GO:0006378,GO:0006396,GO:0006397,GO:0006464,GO:0006479,GO:0006513,GO:0006725,GO:0006807,GO:0006950,GO:0006996,GO:0007275,GO:0007369,GO:0007399,GO:0007417,GO:0007492,GO:0007507,GO:0008023,GO:0008150,GO:0008152,GO:0008213,GO:0009058,GO:0009059,GO:0009266,GO:0009409,GO:0009628,GO:0009653,GO:0009790,GO:0009792,GO:0009887,GO:0009888,GO:0009889,GO:0009891,GO:0009893,GO:0009909,GO:0009910,GO:0009987,GO:0010001,GO:0010048,GO:0010390,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0010639,GO:0010847,GO:0014031,GO:0014032,GO:0014033,GO:0015630,GO:0016043,GO:0016070,GO:0016071,GO:0016567,GO:0016569,GO:0016570,GO:0016571,GO:0016574,GO:0016591,GO:0016593,GO:0018022,GO:0018023,GO:0018130,GO:0018193,GO:0018205,GO:0019219,GO:0019222,GO:0019438,GO:0019538,GO:0019827,GO:0019899,GO:0021510,GO:0021515,GO:0021529,GO:0021782,GO:0022008,GO:0022607,GO:0030154,GO:0030318,GO:0030880,GO:0031056,GO:0031123,GO:0031124,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031396,GO:0031399,GO:0031440,GO:0031442,GO:0031445,GO:0031452,GO:0031454,GO:0031974,GO:0031981,GO:0032259,GO:0032268,GO:0032446,GO:0032501,GO:0032502,GO:0032774,GO:0032784,GO:0032786,GO:0032968,GO:0032991,GO:0033043,GO:0033044,GO:0033182,GO:0033523,GO:0033696,GO:0034243,GO:0034641,GO:0034645,GO:0034654,GO:0034968,GO:0035206,GO:0035987,GO:0036211,GO:0042063,GO:0042127,GO:0043009,GO:0043170,GO:0043175,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043414,GO:0043473,GO:0043631,GO:0043933,GO:0044085,GO:0044087,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044430,GO:0044444,GO:0044446,GO:0044451,GO:0044452,GO:0044464,GO:0044877,GO:0045165,GO:0045309,GO:0045595,GO:0045596,GO:0045637,GO:0045638,GO:0045798,GO:0045893,GO:0045935,GO:0045943,GO:0045944,GO:0046483,GO:0048066,GO:0048468,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048562,GO:0048568,GO:0048580,GO:0048581,GO:0048583,GO:0048598,GO:0048646,GO:0048701,GO:0048704,GO:0048705,GO:0048706,GO:0048709,GO:0048731,GO:0048762,GO:0048831,GO:0048856,GO:0048863,GO:0048864,GO:0048869,GO:0050684,GO:0050685,GO:0050789,GO:0050793,GO:0050794,GO:0050815,GO:0050896,GO:0050931,GO:0050936,GO:0051052,GO:0051093,GO:0051128,GO:0051129,GO:0051171,GO:0051173,GO:0051219,GO:0051239,GO:0051241,GO:0051246,GO:0051252,GO:0051254,GO:0051276,GO:0051568,GO:0055029,GO:0060255,GO:0060485,GO:0060795,GO:0061695,GO:0065003,GO:0065007,GO:0070013,GO:0070063,GO:0070647,GO:0071704,GO:0071840,GO:0072359,GO:0080090,GO:0080134,GO:0080135,GO:0080182,GO:0090262,GO:0090304,GO:0097159,GO:0097659,GO:0098727,GO:0099122,GO:0140110,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901576,GO:1902275,GO:1902494,GO:1902680,GO:1903311,GO:1903313,GO:1903320,GO:1903506,GO:1903508,GO:1903706,GO:1903707,GO:1904837,GO:1904888,GO:1905268,GO:1990234,GO:1990269,GO:2000026,GO:2000112,GO:2000241,GO:2000242,GO:2000819,GO:2001020,GO:2001141,GO:2001166,GO:2001173,GO:2001207,GO:2001209,GO:2001251
Evalue7.91e-05
EggNOG OGsKOG2428@1|root,KOG2428@2759|Eukaryota
DescriptionRNA polymerase II C-terminal domain phosphoserine binding
COG categoryO
BRITEko00000,ko03021
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi6856Gvermi6856Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_24229 213819..215012 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6856.t1.stop1Gvermi6856.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_24229 213819..213821 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6856.t1.CDS1Gvermi6856.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24229 213819..215012 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6856.t1.exon1Gvermi6856.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24229 213819..215012 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6856.t1.start1Gvermi6856.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_24229 215010..215012 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6856.t1Gvermi6856.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_24229 213819..215012 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi6856.t1 ID=Gvermi6856.t1|Name=Gvermi6856.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=398bp
MSDISEDEYEHSALPRTKEAAAAARDIIDLSDDDSEEERKTTRDRRPAVR
ENEDEPQRSDEEPEQSDLDNQGSPKREFGLDPNNVHDLDPDADPNADDAS
LSQDRERTPDIEDKYERVCGHRSDGQRKVDILHFPPSISLHTSLASDLKD
LPELENPILFRLKPEMKKAGQSDAQTLLKFIQANPNPFALKRILDTNAHL
ITWSDGSKTITIGNEQFLLIDDIIASKHYVFRRGDRIQTFEAEVGSIRRV
QPSTTGSSAAKMALAKAQKRARNANSITTGRTMMRCMHNGGELEEEKAKQ
ESLKRQRERLRMEAKRRQQRERAMRPARGLTTEMLESNEEESGEDEKMRR
IEERVGESRLMRAKRAAAPRIEVSVKRRKVGARRILSDDDDGDDESE*
back to top

spliced messenger RNA

>Gvermi6856.t1 ID=Gvermi6856.t1|Name=Gvermi6856.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1194bp|location=Sequence derived from alignment at ScGOVlb_24229:213819..215012- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGGATATCTCTGAAGACGAATATGAGCACTCCGCTCTTCCGCGTAC
GAAAGAAGCGGCAGCTGCAGCTCGTGACATTATCGACTTATCAGATGACG
ACTCCGAAGAAGAGCGAAAAACAACTAGGGACAGAAGGCCTGCGGTACGG
GAAAATGAAGATGAACCGCAGCGCTCAGACGAGGAGCCCGAGCAATCGGA
CTTAGACAACCAAGGGTCCCCGAAACGAGAATTTGGCTTGGATCCCAATA
ACGTGCATGATTTGGACCCTGATGCCGATCCGAACGCGGATGATGCTTCT
TTGAGCCAAGATCGAGAGCGAACTCCAGATATCGAGGACAAATATGAAAG
GGTTTGTGGCCACCGCAGCGATGGGCAGCGCAAGGTCGACATATTACATT
TCCCACCAAGCATATCGCTACACACCTCACTAGCATCCGACTTGAAAGAT
TTACCGGAGTTGGAAAACCCAATACTGTTTAGACTAAAACCCGAGATGAA
GAAAGCAGGACAGTCCGACGCTCAAACTCTGCTGAAATTCATCCAGGCAA
ACCCCAATCCATTTGCACTCAAGCGCATCTTAGATACCAATGCGCATTTG
ATAACTTGGTCAGACGGGTCGAAAACAATAACCATAGGCAACGAACAATT
CCTTCTAATTGATGATATTATTGCATCCAAGCATTACGTTTTTCGTCGGG
GCGATCGTATCCAAACGTTCGAGGCCGAAGTGGGTTCTATTCGAAGAGTG
CAGCCTTCAACAACCGGTTCTTCGGCGGCAAAGATGGCACTCGCCAAGGC
CCAGAAACGTGCGAGGAATGCAAACTCGATTACTACCGGCCGGACAATGA
TGCGATGCATGCATAATGGAGGTGAATTGGAAGAAGAGAAGGCAAAGCAA
GAGAGCCTTAAACGGCAACGGGAGCGTTTGCGAATGGAAGCGAAACGTAG
ACAACAACGAGAACGTGCGATGCGCCCCGCGAGAGGCCTTACCACAGAAA
TGCTGGAATCCAACGAAGAAGAAAGCGGCGAGGATGAAAAAATGCGGCGA
ATCGAGGAAAGAGTTGGAGAAAGTCGGTTAATGCGGGCAAAGCGAGCGGC
CGCACCGAGAATTGAAGTATCGGTTAAGAGGAGAAAGGTGGGGGCAAGGC
GAATTTTGTCGGACGATGACGATGGCGACGATGAAAGTGAATGA
back to top

protein sequence of Gvermi6856.t1

>Gvermi6856.t1 ID=Gvermi6856.t1|Name=Gvermi6856.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=398bp
MSDISEDEYEHSALPRTKEAAAAARDIIDLSDDDSEEERKTTRDRRPAVR
ENEDEPQRSDEEPEQSDLDNQGSPKREFGLDPNNVHDLDPDADPNADDAS
LSQDRERTPDIEDKYERVCGHRSDGQRKVDILHFPPSISLHTSLASDLKD
LPELENPILFRLKPEMKKAGQSDAQTLLKFIQANPNPFALKRILDTNAHL
ITWSDGSKTITIGNEQFLLIDDIIASKHYVFRRGDRIQTFEAEVGSIRRV
QPSTTGSSAAKMALAKAQKRARNANSITTGRTMMRCMHNGGELEEEKAKQ
ESLKRQRERLRMEAKRRQQRERAMRPARGLTTEMLESNEEESGEDEKMRR
IEERVGESRLMRAKRAAAPRIEVSVKRRKVGARRILSDDDDGDDESE*
back to top

mRNA from alignment at ScGOVlb_24229:213819..215012-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi6856.t1 ID=Gvermi6856.t1|Name=Gvermi6856.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1194bp|location=Sequence derived from alignment at ScGOVlb_24229:213819..215012- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTCGGATATCTCTGAAGACGAATATGAGCACTCCGCTCTTCCGCGTAC
GAAAGAAGCGGCAGCTGCAGCTCGTGACATTATCGACTTATCAGATGACG
ACTCCGAAGAAGAGCGAAAAACAACTAGGGACAGAAGGCCTGCGGTACGG
GAAAATGAAGATGAACCGCAGCGCTCAGACGAGGAGCCCGAGCAATCGGA
CTTAGACAACCAAGGGTCCCCGAAACGAGAATTTGGCTTGGATCCCAATA
ACGTGCATGATTTGGACCCTGATGCCGATCCGAACGCGGATGATGCTTCT
TTGAGCCAAGATCGAGAGCGAACTCCAGATATCGAGGACAAATATGAAAG
GGTTTGTGGCCACCGCAGCGATGGGCAGCGCAAGGTCGACATATTACATT
TCCCACCAAGCATATCGCTACACACCTCACTAGCATCCGACTTGAAAGAT
TTACCGGAGTTGGAAAACCCAATACTGTTTAGACTAAAACCCGAGATGAA
GAAAGCAGGACAGTCCGACGCTCAAACTCTGCTGAAATTCATCCAGGCAA
ACCCCAATCCATTTGCACTCAAGCGCATCTTAGATACCAATGCGCATTTG
ATAACTTGGTCAGACGGGTCGAAAACAATAACCATAGGCAACGAACAATT
CCTTCTAATTGATGATATTATTGCATCCAAGCATTACGTTTTTCGTCGGG
GCGATCGTATCCAAACGTTCGAGGCCGAAGTGGGTTCTATTCGAAGAGTG
CAGCCTTCAACAACCGGTTCTTCGGCGGCAAAGATGGCACTCGCCAAGGC
CCAGAAACGTGCGAGGAATGCAAACTCGATTACTACCGGCCGGACAATGA
TGCGATGCATGCATAATGGAGGTGAATTGGAAGAAGAGAAGGCAAAGCAA
GAGAGCCTTAAACGGCAACGGGAGCGTTTGCGAATGGAAGCGAAACGTAG
ACAACAACGAGAACGTGCGATGCGCCCCGCGAGAGGCCTTACCACAGAAA
TGCTGGAATCCAACGAAGAAGAAAGCGGCGAGGATGAAAAAATGCGGCGA
ATCGAGGAAAGAGTTGGAGAAAGTCGGTTAATGCGGGCAAAGCGAGCGGC
CGCACCGAGAATTGAAGTATCGGTTAAGAGGAGAAAGGTGGGGGCAAGGC
GAATTTTGTCGGACGATGACGATGGCGACGATGAAAGTGAATGA
back to top

Coding sequence (CDS) from alignment at ScGOVlb_24229:213819..215012-

>Gvermi6856.t1 ID=Gvermi6856.t1|Name=Gvermi6856.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1194bp|location=Sequence derived from alignment at ScGOVlb_24229:213819..215012- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTCGGATATCTCTGAAGACGAATATGAGCACTCCGCTCTTCCGCGTAC
GAAAGAAGCGGCAGCTGCAGCTCGTGACATTATCGACTTATCAGATGACG
ACTCCGAAGAAGAGCGAAAAACAACTAGGGACAGAAGGCCTGCGGTACGG
GAAAATGAAGATGAACCGCAGCGCTCAGACGAGGAGCCCGAGCAATCGGA
CTTAGACAACCAAGGGTCCCCGAAACGAGAATTTGGCTTGGATCCCAATA
ACGTGCATGATTTGGACCCTGATGCCGATCCGAACGCGGATGATGCTTCT
TTGAGCCAAGATCGAGAGCGAACTCCAGATATCGAGGACAAATATGAAAG
GGTTTGTGGCCACCGCAGCGATGGGCAGCGCAAGGTCGACATATTACATT
TCCCACCAAGCATATCGCTACACACCTCACTAGCATCCGACTTGAAAGAT
TTACCGGAGTTGGAAAACCCAATACTGTTTAGACTAAAACCCGAGATGAA
GAAAGCAGGACAGTCCGACGCTCAAACTCTGCTGAAATTCATCCAGGCAA
ACCCCAATCCATTTGCACTCAAGCGCATCTTAGATACCAATGCGCATTTG
ATAACTTGGTCAGACGGGTCGAAAACAATAACCATAGGCAACGAACAATT
CCTTCTAATTGATGATATTATTGCATCCAAGCATTACGTTTTTCGTCGGG
GCGATCGTATCCAAACGTTCGAGGCCGAAGTGGGTTCTATTCGAAGAGTG
CAGCCTTCAACAACCGGTTCTTCGGCGGCAAAGATGGCACTCGCCAAGGC
CCAGAAACGTGCGAGGAATGCAAACTCGATTACTACCGGCCGGACAATGA
TGCGATGCATGCATAATGGAGGTGAATTGGAAGAAGAGAAGGCAAAGCAA
GAGAGCCTTAAACGGCAACGGGAGCGTTTGCGAATGGAAGCGAAACGTAG
ACAACAACGAGAACGTGCGATGCGCCCCGCGAGAGGCCTTACCACAGAAA
TGCTGGAATCCAACGAAGAAGAAAGCGGCGAGGATGAAAAAATGCGGCGA
ATCGAGGAAAGAGTTGGAGAAAGTCGGTTAATGCGGGCAAAGCGAGCGGC
CGCACCGAGAATTGAAGTATCGGTTAAGAGGAGAAAGGTGGGGGCAAGGC
GAATTTTGTCGGACGATGACGATGGCGACGATGAAAGTGAATGA
back to top