Gvermi6854.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi6854.t1
Unique NameGvermi6854.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length344
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24229contigScGOVlb_24229:209502..210533 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog2903.EOD15518
PFAMsFMN_red
Max annot lvl2759|Eukaryota
KEGG koko:K11811
Evalue8.94e-109
EggNOG OGsCOG0431@1|root,2QQY8@2759|Eukaryota
DescriptionNADPH-dependent FMN reductase
COG categoryS
BRITEko00000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi6854Gvermi6854Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_24229 209502..210533 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6854.t1.start1Gvermi6854.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_24229 209502..209504 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6854.t1.CDS1Gvermi6854.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24229 209502..210533 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6854.t1.exon1Gvermi6854.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24229 209502..210533 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6854.t1.stop1Gvermi6854.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_24229 210531..210533 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6854.t1Gvermi6854.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_24229 209502..210533 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi6854.t1 ID=Gvermi6854.t1|Name=Gvermi6854.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=344bp
MLSSRQIVCKSLLSFSHPLLVPTFRRTLFQKYSNRVLISNHRSVSGASPD
YRALVSMTNFPNGALEASNGTHDGSWVGHRSDPLTPASGPGDDWVNPLVD
RHLQEALHFRPAGAQFTHPPRVLVLYGTLRPKGFSKLLAFECARILEALG
AEVRTYDPHGLPVRDPEIQEHPKVVELRELVHWSEAHVWTASELHGNICS
TFKNQIDWIPLNSGSVRPTQGKSVAILQVCGGSQSFNVVNTMRLLARWMR
MACVVNQSAVQKAWKEFDDDGRMKESSMRDRVVDVMEEFIKFARINREYS
SFLTNRYSERKEKEEKGRLLTQAEKEAAADAAREEANKEKANE*
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spliced messenger RNA

>Gvermi6854.t1 ID=Gvermi6854.t1|Name=Gvermi6854.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1032bp|location=Sequence derived from alignment at ScGOVlb_24229:209502..210533+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTATCATCACGCCAAATCGTGTGCAAATCCCTTTTGTCGTTCTCACA
TCCCCTTTTAGTACCTACATTTCGAAGAACTTTATTCCAAAAGTACTCAA
ATCGTGTCCTCATTTCCAATCATAGAAGTGTATCAGGTGCATCTCCTGAC
TACCGTGCTCTCGTGTCCATGACTAATTTTCCAAACGGAGCACTTGAGGC
TTCAAACGGAACGCACGATGGTTCTTGGGTTGGTCATCGTTCGGATCCGC
TGACACCCGCCTCTGGACCTGGAGATGATTGGGTCAATCCGCTCGTCGAC
CGTCATTTGCAGGAGGCTCTTCATTTTCGCCCGGCTGGTGCCCAATTCAC
GCACCCGCCTCGAGTCTTAGTCTTGTATGGAACGCTGCGTCCGAAGGGAT
TTTCAAAGCTTTTAGCCTTTGAATGCGCGCGAATCCTCGAGGCGCTCGGA
GCGGAAGTAAGAACGTATGACCCGCACGGCCTTCCAGTGCGAGACCCCGA
AATACAGGAACATCCAAAAGTAGTTGAGTTGAGAGAGCTTGTGCATTGGA
GTGAGGCTCATGTTTGGACTGCTTCCGAACTTCATGGGAATATCTGCTCG
ACGTTCAAGAACCAAATCGACTGGATTCCACTTAATTCAGGGTCTGTGAG
ACCTACGCAAGGTAAATCAGTGGCGATTTTGCAGGTTTGCGGTGGAAGTC
AGTCTTTTAATGTTGTTAACACTATGAGATTGTTGGCAAGATGGATGAGA
ATGGCATGCGTAGTTAATCAAAGTGCGGTGCAAAAAGCCTGGAAAGAATT
CGACGATGATGGCAGGATGAAGGAAAGCAGCATGAGGGATCGTGTTGTGG
ATGTCATGGAAGAATTCATCAAGTTTGCAAGAATCAACAGAGAGTACAGC
AGTTTCCTCACTAATCGATACTCGGAAAGAAAGGAAAAGGAAGAGAAGGG
TCGTCTTCTCACGCAGGCGGAAAAAGAAGCTGCAGCGGATGCTGCCCGTG
AAGAAGCCAACAAAGAGAAGGCAAATGAATAA
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protein sequence of Gvermi6854.t1

>Gvermi6854.t1 ID=Gvermi6854.t1|Name=Gvermi6854.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=344bp
MLSSRQIVCKSLLSFSHPLLVPTFRRTLFQKYSNRVLISNHRSVSGASPD
YRALVSMTNFPNGALEASNGTHDGSWVGHRSDPLTPASGPGDDWVNPLVD
RHLQEALHFRPAGAQFTHPPRVLVLYGTLRPKGFSKLLAFECARILEALG
AEVRTYDPHGLPVRDPEIQEHPKVVELRELVHWSEAHVWTASELHGNICS
TFKNQIDWIPLNSGSVRPTQGKSVAILQVCGGSQSFNVVNTMRLLARWMR
MACVVNQSAVQKAWKEFDDDGRMKESSMRDRVVDVMEEFIKFARINREYS
SFLTNRYSERKEKEEKGRLLTQAEKEAAADAAREEANKEKANE*
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mRNA from alignment at ScGOVlb_24229:209502..210533+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi6854.t1 ID=Gvermi6854.t1|Name=Gvermi6854.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1032bp|location=Sequence derived from alignment at ScGOVlb_24229:209502..210533+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTTATCATCACGCCAAATCGTGTGCAAATCCCTTTTGTCGTTCTCACA
TCCCCTTTTAGTACCTACATTTCGAAGAACTTTATTCCAAAAGTACTCAA
ATCGTGTCCTCATTTCCAATCATAGAAGTGTATCAGGTGCATCTCCTGAC
TACCGTGCTCTCGTGTCCATGACTAATTTTCCAAACGGAGCACTTGAGGC
TTCAAACGGAACGCACGATGGTTCTTGGGTTGGTCATCGTTCGGATCCGC
TGACACCCGCCTCTGGACCTGGAGATGATTGGGTCAATCCGCTCGTCGAC
CGTCATTTGCAGGAGGCTCTTCATTTTCGCCCGGCTGGTGCCCAATTCAC
GCACCCGCCTCGAGTCTTAGTCTTGTATGGAACGCTGCGTCCGAAGGGAT
TTTCAAAGCTTTTAGCCTTTGAATGCGCGCGAATCCTCGAGGCGCTCGGA
GCGGAAGTAAGAACGTATGACCCGCACGGCCTTCCAGTGCGAGACCCCGA
AATACAGGAACATCCAAAAGTAGTTGAGTTGAGAGAGCTTGTGCATTGGA
GTGAGGCTCATGTTTGGACTGCTTCCGAACTTCATGGGAATATCTGCTCG
ACGTTCAAGAACCAAATCGACTGGATTCCACTTAATTCAGGGTCTGTGAG
ACCTACGCAAGGTAAATCAGTGGCGATTTTGCAGGTTTGCGGTGGAAGTC
AGTCTTTTAATGTTGTTAACACTATGAGATTGTTGGCAAGATGGATGAGA
ATGGCATGCGTAGTTAATCAAAGTGCGGTGCAAAAAGCCTGGAAAGAATT
CGACGATGATGGCAGGATGAAGGAAAGCAGCATGAGGGATCGTGTTGTGG
ATGTCATGGAAGAATTCATCAAGTTTGCAAGAATCAACAGAGAGTACAGC
AGTTTCCTCACTAATCGATACTCGGAAAGAAAGGAAAAGGAAGAGAAGGG
TCGTCTTCTCACGCAGGCGGAAAAAGAAGCTGCAGCGGATGCTGCCCGTG
AAGAAGCCAACAAAGAGAAGGCAAATGAATAA
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Coding sequence (CDS) from alignment at ScGOVlb_24229:209502..210533+

>Gvermi6854.t1 ID=Gvermi6854.t1|Name=Gvermi6854.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1032bp|location=Sequence derived from alignment at ScGOVlb_24229:209502..210533+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTTATCATCACGCCAAATCGTGTGCAAATCCCTTTTGTCGTTCTCACA
TCCCCTTTTAGTACCTACATTTCGAAGAACTTTATTCCAAAAGTACTCAA
ATCGTGTCCTCATTTCCAATCATAGAAGTGTATCAGGTGCATCTCCTGAC
TACCGTGCTCTCGTGTCCATGACTAATTTTCCAAACGGAGCACTTGAGGC
TTCAAACGGAACGCACGATGGTTCTTGGGTTGGTCATCGTTCGGATCCGC
TGACACCCGCCTCTGGACCTGGAGATGATTGGGTCAATCCGCTCGTCGAC
CGTCATTTGCAGGAGGCTCTTCATTTTCGCCCGGCTGGTGCCCAATTCAC
GCACCCGCCTCGAGTCTTAGTCTTGTATGGAACGCTGCGTCCGAAGGGAT
TTTCAAAGCTTTTAGCCTTTGAATGCGCGCGAATCCTCGAGGCGCTCGGA
GCGGAAGTAAGAACGTATGACCCGCACGGCCTTCCAGTGCGAGACCCCGA
AATACAGGAACATCCAAAAGTAGTTGAGTTGAGAGAGCTTGTGCATTGGA
GTGAGGCTCATGTTTGGACTGCTTCCGAACTTCATGGGAATATCTGCTCG
ACGTTCAAGAACCAAATCGACTGGATTCCACTTAATTCAGGGTCTGTGAG
ACCTACGCAAGGTAAATCAGTGGCGATTTTGCAGGTTTGCGGTGGAAGTC
AGTCTTTTAATGTTGTTAACACTATGAGATTGTTGGCAAGATGGATGAGA
ATGGCATGCGTAGTTAATCAAAGTGCGGTGCAAAAAGCCTGGAAAGAATT
CGACGATGATGGCAGGATGAAGGAAAGCAGCATGAGGGATCGTGTTGTGG
ATGTCATGGAAGAATTCATCAAGTTTGCAAGAATCAACAGAGAGTACAGC
AGTTTCCTCACTAATCGATACTCGGAAAGAAAGGAAAAGGAAGAGAAGGG
TCGTCTTCTCACGCAGGCGGAAAAAGAAGCTGCAGCGGATGCTGCCCGTG
AAGAAGCCAACAAAGAGAAGGCAAATGAATAA
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