Gvermi6853.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi6853.t1
Unique Name	Gvermi6853.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	683

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_24229	contig	ScGOVlb_24229:205237..207285 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	6500.XP_005089198.1
PFAMs	HEAT
Max annot lvl	33208\|Metazoa
Evalue	5.9e-87
EggNOG OGs	28JXF@1\|root,2QSBS@2759\|Eukaryota,39RXE@33154\|Opisthokonta,3BMGQ@33208\|Metazoa,3D04W@33213\|Bilateria

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi6853	Gvermi6853	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_24229 205237..207285 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6853.t1.start1	Gvermi6853.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_24229 205237..205239 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6853.t1.CDS1	Gvermi6853.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_24229 205237..207285 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6853.t1.exon1	Gvermi6853.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_24229 205237..207285 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6853.t1.stop1	Gvermi6853.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_24229 207283..207285 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6853.t1	Gvermi6853.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_24229 205237..207285 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_24229:205237..207285+
coding sequence from alignment at ScGOVlb_24229:205237..207285+

mRNA sequence

>Gvermi6853.t1 ID=Gvermi6853.t1|Name=Gvermi6853.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=683bp
MVASAQVQSIPEGHGRQCSELNQILVGLSSKSHLQRDLALRQMSASLGSL
SPEELHHLKGELVALMRAQDQWYAVYGACTAASKLLQTPRIIDDLSDDSQ
FLPQLLQLCETLITHSEPRVRESASELIKELAVVEGISIWTHMVPLLIGH
IERSFALDESQRLKEASRVAARELDEDAADAKLYGLRMVHETEGWKGLET
MLLCLVSLADGCGKQVFSSIGDQTAFDVQGLSEIIQFVETCSSHPNRFVR
EAGLKVLNSLIAAAASVHGGFVAELVKHCTQVVANGLQDNWSQVRFAASV
ATRTIMSSLNAEEKRKLYPLFLPRMCLNRHYVAEGVRNYSQHTWRHVIAK
DGRLFLERYMDECITYYESQCQADNHAVREAACQSLGEVALRLRREVVSP
YIARVIAGLVGCFKDESWPVRDHACQALADVISEFGMIAEETGSLPEAFE
LFRAHLADNIPSVRANCANSFEKASCVFDVHHPIIGAGRLRDVVKELICG
IEHQTESTEEVQRMSNSQFGASTQLAVDDLHTNQVMYSCGSLAPKLRRGG
GCTDHGFVREKQPWEESDGGILLWRALMRSAKSRNIVTSMFGKVVEVGSI
GVRKHFPGRTRFLIRFLEVIAETSAWIPEDDLNRELDNLVRIYGESYNLS
EISSRKAGEYRRCLQRKVGLKEFSAAEKRMKG*

spliced messenger RNA

>Gvermi6853.t1 ID=Gvermi6853.t1|Name=Gvermi6853.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=2049bp|location=Sequence derived from alignment at ScGOVlb_24229:205237..207285+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTCGCCTCCGCCCAGGTTCAATCCATACCAGAGGGACATGGTCGACA
ATGCTCGGAACTTAACCAGATTCTGGTCGGTCTATCTTCAAAGTCACATT
TACAGCGCGACCTAGCCTTGCGTCAAATGTCGGCCAGTCTAGGATCTCTT
TCCCCTGAAGAATTGCATCACCTAAAAGGAGAGCTCGTCGCCCTAATGCG
CGCTCAAGACCAGTGGTATGCCGTCTATGGTGCCTGTACTGCTGCTTCTA
AGCTTCTACAAACTCCCAGGATAATTGACGATCTCAGCGATGACTCACAG
TTTCTTCCCCAATTGTTGCAACTGTGCGAAACGTTAATTACTCACAGTGA
ACCAAGAGTAAGAGAGTCTGCATCTGAACTAATCAAGGAACTAGCTGTCG
TGGAAGGAATTTCAATATGGACTCATATGGTCCCATTGCTCATTGGCCAC
ATCGAGCGCAGCTTTGCCCTTGATGAGTCGCAACGCCTGAAAGAAGCATC
CCGTGTCGCAGCTCGAGAATTGGACGAAGATGCGGCAGATGCAAAGCTAT
ACGGGCTGAGAATGGTACATGAGACTGAAGGCTGGAAAGGTTTAGAGACA
ATGTTACTGTGCCTCGTGTCCTTAGCTGATGGCTGCGGAAAACAAGTGTT
TTCCAGCATTGGAGATCAAACTGCATTCGATGTTCAAGGTTTGTCCGAGA
TCATTCAGTTTGTGGAGACATGCAGCTCGCATCCAAATCGTTTTGTGCGA
GAAGCCGGCCTCAAAGTTCTCAACTCTCTTATCGCCGCCGCTGCCAGCGT
ACATGGGGGCTTTGTCGCGGAACTTGTAAAACATTGTACTCAAGTGGTTG
CCAATGGATTGCAAGATAATTGGAGCCAGGTGAGATTTGCAGCGTCAGTA
GCTACAAGAACCATCATGAGCAGTTTGAATGCCGAAGAAAAGCGGAAGCT
GTATCCTCTTTTTCTCCCACGCATGTGTCTCAACCGGCATTATGTTGCTG
AAGGCGTTCGGAACTACTCGCAACACACTTGGCGTCACGTCATCGCCAAA
GATGGGCGCCTATTTCTGGAGCGATACATGGATGAATGTATCACGTATTA
CGAGAGTCAGTGTCAAGCTGATAACCATGCAGTTAGAGAGGCAGCTTGCC
AAAGCCTTGGGGAGGTTGCGTTGCGACTGAGGCGTGAAGTTGTGTCACCC
TACATTGCGCGAGTTATTGCAGGTCTTGTTGGCTGTTTCAAAGACGAGTC
TTGGCCAGTGCGAGACCATGCTTGCCAGGCTCTTGCTGACGTCATTTCTG
AGTTTGGAATGATTGCTGAAGAAACAGGCAGCCTACCTGAAGCTTTCGAA
CTGTTTCGAGCACATTTGGCAGACAATATTCCTTCCGTTCGCGCGAACTG
TGCAAACTCATTTGAAAAAGCAAGTTGCGTATTCGATGTCCATCACCCCA
TTATTGGCGCCGGTCGTTTGAGAGATGTTGTGAAGGAATTGATTTGTGGT
ATTGAGCATCAGACGGAATCTACTGAGGAAGTGCAAAGGATGTCAAACAG
TCAGTTCGGAGCTTCGACCCAATTAGCGGTTGATGATTTACACACAAACC
AGGTCATGTACAGTTGTGGATCGTTGGCACCAAAGCTGCGGCGAGGTGGT
GGCTGCACAGATCATGGTTTTGTTCGAGAAAAGCAGCCATGGGAAGAAAG
CGATGGCGGTATCCTCCTTTGGCGTGCTTTAATGCGAAGTGCAAAGTCTC
GAAACATAGTCACTTCAATGTTTGGCAAAGTAGTTGAAGTTGGATCTATA
GGAGTCAGGAAACACTTTCCTGGGCGAACTCGATTCTTGATTAGGTTTTT
AGAAGTTATAGCAGAAACTTCAGCATGGATTCCTGAGGACGACCTTAATC
GAGAACTTGATAATCTTGTGAGAATTTATGGAGAAAGTTACAATCTGAGT
GAGATCTCCTCAAGAAAAGCTGGAGAGTATCGGAGATGTCTCCAACGCAA
AGTCGGACTAAAAGAATTTTCCGCTGCTGAAAAGCGAATGAAAGGCTAG

protein sequence of Gvermi6853.t1

>Gvermi6853.t1 ID=Gvermi6853.t1|Name=Gvermi6853.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=683bp
MVASAQVQSIPEGHGRQCSELNQILVGLSSKSHLQRDLALRQMSASLGSL
SPEELHHLKGELVALMRAQDQWYAVYGACTAASKLLQTPRIIDDLSDDSQ
FLPQLLQLCETLITHSEPRVRESASELIKELAVVEGISIWTHMVPLLIGH
IERSFALDESQRLKEASRVAARELDEDAADAKLYGLRMVHETEGWKGLET
MLLCLVSLADGCGKQVFSSIGDQTAFDVQGLSEIIQFVETCSSHPNRFVR
EAGLKVLNSLIAAAASVHGGFVAELVKHCTQVVANGLQDNWSQVRFAASV
ATRTIMSSLNAEEKRKLYPLFLPRMCLNRHYVAEGVRNYSQHTWRHVIAK
DGRLFLERYMDECITYYESQCQADNHAVREAACQSLGEVALRLRREVVSP
YIARVIAGLVGCFKDESWPVRDHACQALADVISEFGMIAEETGSLPEAFE
LFRAHLADNIPSVRANCANSFEKASCVFDVHHPIIGAGRLRDVVKELICG
IEHQTESTEEVQRMSNSQFGASTQLAVDDLHTNQVMYSCGSLAPKLRRGG
GCTDHGFVREKQPWEESDGGILLWRALMRSAKSRNIVTSMFGKVVEVGSI
GVRKHFPGRTRFLIRFLEVIAETSAWIPEDDLNRELDNLVRIYGESYNLS
EISSRKAGEYRRCLQRKVGLKEFSAAEKRMKG*

mRNA from alignment at ScGOVlb_24229:205237..207285+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi6853.t1 ID=Gvermi6853.t1|Name=Gvermi6853.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=2049bp|location=Sequence derived from alignment at ScGOVlb_24229:205237..207285+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGTCGCCTCCGCCCAGGTTCAATCCATACCAGAGGGACATGGTCGACA
ATGCTCGGAACTTAACCAGATTCTGGTCGGTCTATCTTCAAAGTCACATT
TACAGCGCGACCTAGCCTTGCGTCAAATGTCGGCCAGTCTAGGATCTCTT
TCCCCTGAAGAATTGCATCACCTAAAAGGAGAGCTCGTCGCCCTAATGCG
CGCTCAAGACCAGTGGTATGCCGTCTATGGTGCCTGTACTGCTGCTTCTA
AGCTTCTACAAACTCCCAGGATAATTGACGATCTCAGCGATGACTCACAG
TTTCTTCCCCAATTGTTGCAACTGTGCGAAACGTTAATTACTCACAGTGA
ACCAAGAGTAAGAGAGTCTGCATCTGAACTAATCAAGGAACTAGCTGTCG
TGGAAGGAATTTCAATATGGACTCATATGGTCCCATTGCTCATTGGCCAC
ATCGAGCGCAGCTTTGCCCTTGATGAGTCGCAACGCCTGAAAGAAGCATC
CCGTGTCGCAGCTCGAGAATTGGACGAAGATGCGGCAGATGCAAAGCTAT
ACGGGCTGAGAATGGTACATGAGACTGAAGGCTGGAAAGGTTTAGAGACA
ATGTTACTGTGCCTCGTGTCCTTAGCTGATGGCTGCGGAAAACAAGTGTT
TTCCAGCATTGGAGATCAAACTGCATTCGATGTTCAAGGTTTGTCCGAGA
TCATTCAGTTTGTGGAGACATGCAGCTCGCATCCAAATCGTTTTGTGCGA
GAAGCCGGCCTCAAAGTTCTCAACTCTCTTATCGCCGCCGCTGCCAGCGT
ACATGGGGGCTTTGTCGCGGAACTTGTAAAACATTGTACTCAAGTGGTTG
CCAATGGATTGCAAGATAATTGGAGCCAGGTGAGATTTGCAGCGTCAGTA
GCTACAAGAACCATCATGAGCAGTTTGAATGCCGAAGAAAAGCGGAAGCT
GTATCCTCTTTTTCTCCCACGCATGTGTCTCAACCGGCATTATGTTGCTG
AAGGCGTTCGGAACTACTCGCAACACACTTGGCGTCACGTCATCGCCAAA
GATGGGCGCCTATTTCTGGAGCGATACATGGATGAATGTATCACGTATTA
CGAGAGTCAGTGTCAAGCTGATAACCATGCAGTTAGAGAGGCAGCTTGCC
AAAGCCTTGGGGAGGTTGCGTTGCGACTGAGGCGTGAAGTTGTGTCACCC
TACATTGCGCGAGTTATTGCAGGTCTTGTTGGCTGTTTCAAAGACGAGTC
TTGGCCAGTGCGAGACCATGCTTGCCAGGCTCTTGCTGACGTCATTTCTG
AGTTTGGAATGATTGCTGAAGAAACAGGCAGCCTACCTGAAGCTTTCGAA
CTGTTTCGAGCACATTTGGCAGACAATATTCCTTCCGTTCGCGCGAACTG
TGCAAACTCATTTGAAAAAGCAAGTTGCGTATTCGATGTCCATCACCCCA
TTATTGGCGCCGGTCGTTTGAGAGATGTTGTGAAGGAATTGATTTGTGGT
ATTGAGCATCAGACGGAATCTACTGAGGAAGTGCAAAGGATGTCAAACAG
TCAGTTCGGAGCTTCGACCCAATTAGCGGTTGATGATTTACACACAAACC
AGGTCATGTACAGTTGTGGATCGTTGGCACCAAAGCTGCGGCGAGGTGGT
GGCTGCACAGATCATGGTTTTGTTCGAGAAAAGCAGCCATGGGAAGAAAG
CGATGGCGGTATCCTCCTTTGGCGTGCTTTAATGCGAAGTGCAAAGTCTC
GAAACATAGTCACTTCAATGTTTGGCAAAGTAGTTGAAGTTGGATCTATA
GGAGTCAGGAAACACTTTCCTGGGCGAACTCGATTCTTGATTAGGTTTTT
AGAAGTTATAGCAGAAACTTCAGCATGGATTCCTGAGGACGACCTTAATC
GAGAACTTGATAATCTTGTGAGAATTTATGGAGAAAGTTACAATCTGAGT
GAGATCTCCTCAAGAAAAGCTGGAGAGTATCGGAGATGTCTCCAACGCAA
AGTCGGACTAAAAGAATTTTCCGCTGCTGAAAAGCGAATGAAAGGCTAG

Coding sequence (CDS) from alignment at ScGOVlb_24229:205237..207285+

>Gvermi6853.t1 ID=Gvermi6853.t1|Name=Gvermi6853.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=2049bp|location=Sequence derived from alignment at ScGOVlb_24229:205237..207285+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGTCGCCTCCGCCCAGGTTCAATCCATACCAGAGGGACATGGTCGACA
ATGCTCGGAACTTAACCAGATTCTGGTCGGTCTATCTTCAAAGTCACATT
TACAGCGCGACCTAGCCTTGCGTCAAATGTCGGCCAGTCTAGGATCTCTT
TCCCCTGAAGAATTGCATCACCTAAAAGGAGAGCTCGTCGCCCTAATGCG
CGCTCAAGACCAGTGGTATGCCGTCTATGGTGCCTGTACTGCTGCTTCTA
AGCTTCTACAAACTCCCAGGATAATTGACGATCTCAGCGATGACTCACAG
TTTCTTCCCCAATTGTTGCAACTGTGCGAAACGTTAATTACTCACAGTGA
ACCAAGAGTAAGAGAGTCTGCATCTGAACTAATCAAGGAACTAGCTGTCG
TGGAAGGAATTTCAATATGGACTCATATGGTCCCATTGCTCATTGGCCAC
ATCGAGCGCAGCTTTGCCCTTGATGAGTCGCAACGCCTGAAAGAAGCATC
CCGTGTCGCAGCTCGAGAATTGGACGAAGATGCGGCAGATGCAAAGCTAT
ACGGGCTGAGAATGGTACATGAGACTGAAGGCTGGAAAGGTTTAGAGACA
ATGTTACTGTGCCTCGTGTCCTTAGCTGATGGCTGCGGAAAACAAGTGTT
TTCCAGCATTGGAGATCAAACTGCATTCGATGTTCAAGGTTTGTCCGAGA
TCATTCAGTTTGTGGAGACATGCAGCTCGCATCCAAATCGTTTTGTGCGA
GAAGCCGGCCTCAAAGTTCTCAACTCTCTTATCGCCGCCGCTGCCAGCGT
ACATGGGGGCTTTGTCGCGGAACTTGTAAAACATTGTACTCAAGTGGTTG
CCAATGGATTGCAAGATAATTGGAGCCAGGTGAGATTTGCAGCGTCAGTA
GCTACAAGAACCATCATGAGCAGTTTGAATGCCGAAGAAAAGCGGAAGCT
GTATCCTCTTTTTCTCCCACGCATGTGTCTCAACCGGCATTATGTTGCTG
AAGGCGTTCGGAACTACTCGCAACACACTTGGCGTCACGTCATCGCCAAA
GATGGGCGCCTATTTCTGGAGCGATACATGGATGAATGTATCACGTATTA
CGAGAGTCAGTGTCAAGCTGATAACCATGCAGTTAGAGAGGCAGCTTGCC
AAAGCCTTGGGGAGGTTGCGTTGCGACTGAGGCGTGAAGTTGTGTCACCC
TACATTGCGCGAGTTATTGCAGGTCTTGTTGGCTGTTTCAAAGACGAGTC
TTGGCCAGTGCGAGACCATGCTTGCCAGGCTCTTGCTGACGTCATTTCTG
AGTTTGGAATGATTGCTGAAGAAACAGGCAGCCTACCTGAAGCTTTCGAA
CTGTTTCGAGCACATTTGGCAGACAATATTCCTTCCGTTCGCGCGAACTG
TGCAAACTCATTTGAAAAAGCAAGTTGCGTATTCGATGTCCATCACCCCA
TTATTGGCGCCGGTCGTTTGAGAGATGTTGTGAAGGAATTGATTTGTGGT
ATTGAGCATCAGACGGAATCTACTGAGGAAGTGCAAAGGATGTCAAACAG
TCAGTTCGGAGCTTCGACCCAATTAGCGGTTGATGATTTACACACAAACC
AGGTCATGTACAGTTGTGGATCGTTGGCACCAAAGCTGCGGCGAGGTGGT
GGCTGCACAGATCATGGTTTTGTTCGAGAAAAGCAGCCATGGGAAGAAAG
CGATGGCGGTATCCTCCTTTGGCGTGCTTTAATGCGAAGTGCAAAGTCTC
GAAACATAGTCACTTCAATGTTTGGCAAAGTAGTTGAAGTTGGATCTATA
GGAGTCAGGAAACACTTTCCTGGGCGAACTCGATTCTTGATTAGGTTTTT
AGAAGTTATAGCAGAAACTTCAGCATGGATTCCTGAGGACGACCTTAATC
GAGAACTTGATAATCTTGTGAGAATTTATGGAGAAAGTTACAATCTGAGT
GAGATCTCCTCAAGAAAAGCTGGAGAGTATCGGAGATGTCTCCAACGCAA
AGTCGGACTAAAAGAATTTTCCGCTGCTGAAAAGCGAATGAAAGGCTAG