Gvermi6850.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi6850.t1
Unique NameGvermi6850.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length177
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24229contigScGOVlb_24229:191917..192447 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi6850Gvermi6850Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_24229 191917..192447 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6850.t1.stop1Gvermi6850.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_24229 191917..191919 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6850.t1.CDS1Gvermi6850.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24229 191917..192447 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6850.t1.exon1Gvermi6850.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24229 191917..192447 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6850.t1.start1Gvermi6850.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_24229 192445..192447 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6850.t1Gvermi6850.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_24229 191917..192447 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi6850.t1 ID=Gvermi6850.t1|Name=Gvermi6850.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=177bp
MQPNFQPSFNNSRDQRIENIKHMFPQQQQQQQQQHQHQHQHQQQQQQQQQ
HQLQHPGHYYQTTAPMQQSVHPSQLSQLVPYAPQQNPFLMVPYNTQQQPY
AYPNPFMQGANSMALMPYNQAAAVSVPAMEAERAVQPYSAYRVRRKEGKM
RVNDSDKAFGPLLDEMKQALKKKSTN*
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spliced messenger RNA

>Gvermi6850.t1 ID=Gvermi6850.t1|Name=Gvermi6850.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=531bp|location=Sequence derived from alignment at ScGOVlb_24229:191917..192447- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAGCCCAACTTCCAACCTTCCTTCAACAACTCGCGGGACCAGCGCAT
TGAAAACATCAAGCATATGTTCCCACAACAACAACAGCAGCAGCAGCAGC
AGCACCAGCACCAGCACCAGCACCAACAACAGCAGCAACAACAGCAGCAA
CATCAACTGCAACACCCCGGCCACTACTACCAGACTACCGCTCCGATGCA
ACAATCTGTCCACCCATCGCAATTATCTCAGTTGGTCCCCTACGCCCCGC
AACAAAACCCTTTTCTAATGGTGCCGTACAACACGCAGCAGCAGCCCTAT
GCTTATCCGAATCCGTTCATGCAGGGTGCCAACTCAATGGCTCTTATGCC
GTACAACCAGGCAGCCGCCGTCTCTGTCCCCGCCATGGAGGCCGAACGCG
CCGTGCAGCCTTATTCGGCGTATCGTGTGAGACGGAAAGAGGGAAAGATG
CGAGTGAATGACAGCGACAAGGCTTTTGGACCCTTGCTTGATGAAATGAA
GCAAGCATTGAAGAAAAAGAGTACTAACTAG
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protein sequence of Gvermi6850.t1

>Gvermi6850.t1 ID=Gvermi6850.t1|Name=Gvermi6850.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=177bp
MQPNFQPSFNNSRDQRIENIKHMFPQQQQQQQQQHQHQHQHQQQQQQQQQ
HQLQHPGHYYQTTAPMQQSVHPSQLSQLVPYAPQQNPFLMVPYNTQQQPY
AYPNPFMQGANSMALMPYNQAAAVSVPAMEAERAVQPYSAYRVRRKEGKM
RVNDSDKAFGPLLDEMKQALKKKSTN*
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mRNA from alignment at ScGOVlb_24229:191917..192447-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi6850.t1 ID=Gvermi6850.t1|Name=Gvermi6850.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=531bp|location=Sequence derived from alignment at ScGOVlb_24229:191917..192447- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCAGCCCAACTTCCAACCTTCCTTCAACAACTCGCGGGACCAGCGCAT
TGAAAACATCAAGCATATGTTCCCACAACAACAACAGCAGCAGCAGCAGC
AGCACCAGCACCAGCACCAGCACCAACAACAGCAGCAACAACAGCAGCAA
CATCAACTGCAACACCCCGGCCACTACTACCAGACTACCGCTCCGATGCA
ACAATCTGTCCACCCATCGCAATTATCTCAGTTGGTCCCCTACGCCCCGC
AACAAAACCCTTTTCTAATGGTGCCGTACAACACGCAGCAGCAGCCCTAT
GCTTATCCGAATCCGTTCATGCAGGGTGCCAACTCAATGGCTCTTATGCC
GTACAACCAGGCAGCCGCCGTCTCTGTCCCCGCCATGGAGGCCGAACGCG
CCGTGCAGCCTTATTCGGCGTATCGTGTGAGACGGAAAGAGGGAAAGATG
CGAGTGAATGACAGCGACAAGGCTTTTGGACCCTTGCTTGATGAAATGAA
GCAAGCATTGAAGAAAAAGAGTACTAACTAG
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Coding sequence (CDS) from alignment at ScGOVlb_24229:191917..192447-

>Gvermi6850.t1 ID=Gvermi6850.t1|Name=Gvermi6850.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=531bp|location=Sequence derived from alignment at ScGOVlb_24229:191917..192447- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCAGCCCAACTTCCAACCTTCCTTCAACAACTCGCGGGACCAGCGCAT
TGAAAACATCAAGCATATGTTCCCACAACAACAACAGCAGCAGCAGCAGC
AGCACCAGCACCAGCACCAGCACCAACAACAGCAGCAACAACAGCAGCAA
CATCAACTGCAACACCCCGGCCACTACTACCAGACTACCGCTCCGATGCA
ACAATCTGTCCACCCATCGCAATTATCTCAGTTGGTCCCCTACGCCCCGC
AACAAAACCCTTTTCTAATGGTGCCGTACAACACGCAGCAGCAGCCCTAT
GCTTATCCGAATCCGTTCATGCAGGGTGCCAACTCAATGGCTCTTATGCC
GTACAACCAGGCAGCCGCCGTCTCTGTCCCCGCCATGGAGGCCGAACGCG
CCGTGCAGCCTTATTCGGCGTATCGTGTGAGACGGAAAGAGGGAAAGATG
CGAGTGAATGACAGCGACAAGGCTTTTGGACCCTTGCTTGATGAAATGAA
GCAAGCATTGAAGAAAAAGAGTACTAACTAG
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