Gvermi6849.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi6849.t1
Unique NameGvermi6849.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length511
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24229contigScGOVlb_24229:160886..162418 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi6849Gvermi6849Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_24229 160886..162418 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6849.t1.start1Gvermi6849.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_24229 160886..160888 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6849.t1.CDS1Gvermi6849.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24229 160886..162418 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6849.t1.exon1Gvermi6849.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24229 160886..162418 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6849.t1.stop1Gvermi6849.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_24229 162416..162418 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6849.t1Gvermi6849.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_24229 160886..162418 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi6849.t1 ID=Gvermi6849.t1|Name=Gvermi6849.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=511bp
MDDGQHVQAPTLPADSWAEILRRIPGTDRRFAALSGNVVHDACRSLQTNH
LDPTSLTSKVMTVAESVEFHTMSPDGSLLAVFFRRYPMIRVYECKTGTQL
LILRMGMMPGVLDMAFSPDNSIFAIYGDRAYLIHRLTKSKTNEGEWHVDR
IRTIERKYTVNVGIMAKEVGISFSRDNKHVVFQEVSVDLRRGKAKGLKVR
YEDVDISFRRDYFDPDQGLTTKIIRWNENNSDKSIVYDARRFRLVKFCFS
ASPSRTYIPPGCVSEMFGVILSAEKSLSRRIPVECQQTGKLVEAQPSGCG
KYLLELREQQSSKHLIRKIDMNNLRDINVSELPVLRPPKTLTVVSFVVSD
NIAVVIFSNGPCRGICATGFPENSYLAFRPHGWAVYDARHSGSFYTVFKQ
TTGFEYRAARENLTLSYDGQLLGLVPISQQSDSDCELHVFDVASGVISQM
RRVPTCCISRNAEYAHSAKTQCGCRTVIGGLGSSASISSFSRTFRKMSFA
CTFHNNIIEK*
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spliced messenger RNA

>Gvermi6849.t1 ID=Gvermi6849.t1|Name=Gvermi6849.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1533bp|location=Sequence derived from alignment at ScGOVlb_24229:160886..162418+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGATGATGGTCAGCATGTGCAAGCACCCACTTTGCCAGCAGATAGCTG
GGCTGAAATCTTACGAAGAATACCTGGCACAGATCGTCGCTTTGCTGCTC
TTAGTGGAAATGTGGTCCACGACGCATGTCGGTCGCTGCAAACAAACCAT
CTTGACCCGACAAGCTTGACATCAAAGGTTATGACAGTTGCCGAATCTGT
TGAATTTCATACTATGAGTCCCGACGGATCCCTTCTGGCAGTATTCTTTC
GAAGATATCCTATGATCCGGGTGTACGAATGTAAAACGGGGACGCAGCTT
CTCATTCTCAGGATGGGTATGATGCCTGGAGTGCTGGATATGGCTTTTTC
GCCAGACAATTCAATTTTTGCTATATATGGAGATCGGGCATATCTTATTC
ATCGCTTAACCAAATCTAAGACCAATGAGGGAGAGTGGCATGTTGACCGG
ATACGAACTATTGAACGAAAATACACTGTGAACGTCGGGATTATGGCGAA
AGAAGTGGGAATAAGCTTTTCGAGAGATAACAAACATGTCGTATTTCAGG
AAGTGTCCGTGGACCTAAGGAGAGGCAAAGCTAAAGGCTTAAAAGTCAGA
TATGAAGACGTTGATATTTCATTTCGACGGGATTATTTCGATCCGGATCA
AGGACTGACAACCAAGATTATTCGCTGGAACGAAAACAACTCCGACAAAA
GCATTGTATATGATGCCAGAAGGTTTCGATTGGTCAAGTTCTGCTTTAGT
GCAAGCCCAAGTAGGACATATATTCCCCCTGGATGCGTAAGCGAGATGTT
TGGAGTTATTTTGTCCGCAGAGAAGAGTCTTTCGCGACGTATTCCGGTAG
AATGTCAACAAACTGGAAAGCTTGTCGAAGCCCAGCCGAGTGGATGTGGA
AAATATCTGCTTGAACTTCGAGAACAGCAAAGCTCTAAACACCTCATTCG
AAAAATTGATATGAACAATTTGAGAGACATTAATGTATCAGAACTACCTG
TACTTCGACCACCCAAAACCCTAACTGTTGTCAGTTTTGTTGTGAGCGAC
AATATTGCTGTAGTCATTTTCTCGAATGGTCCTTGTCGCGGCATTTGTGC
AACAGGGTTTCCTGAGAATTCTTACTTGGCATTCAGACCTCACGGTTGGG
CCGTTTATGATGCTCGGCATTCAGGGTCCTTCTACACAGTTTTTAAACAG
ACGACTGGCTTTGAGTATCGAGCAGCCCGGGAAAATCTGACTTTGAGTTA
CGATGGTCAACTTCTTGGGCTCGTGCCTATCAGTCAACAAAGTGATTCTG
ACTGTGAATTACATGTCTTTGACGTTGCCAGTGGTGTCATTTCTCAGATG
CGAAGAGTGCCAACTTGCTGTATCTCTAGGAATGCGGAGTATGCACACAG
TGCGAAAACCCAATGTGGGTGTAGAACCGTTATCGGAGGTTTGGGCAGTA
GTGCATCGATTTCATCATTCTCCAGGACCTTCAGAAAAATGTCATTCGCA
TGTACCTTTCATAACAATATTATAGAGAAGTAA
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protein sequence of Gvermi6849.t1

>Gvermi6849.t1 ID=Gvermi6849.t1|Name=Gvermi6849.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=511bp
MDDGQHVQAPTLPADSWAEILRRIPGTDRRFAALSGNVVHDACRSLQTNH
LDPTSLTSKVMTVAESVEFHTMSPDGSLLAVFFRRYPMIRVYECKTGTQL
LILRMGMMPGVLDMAFSPDNSIFAIYGDRAYLIHRLTKSKTNEGEWHVDR
IRTIERKYTVNVGIMAKEVGISFSRDNKHVVFQEVSVDLRRGKAKGLKVR
YEDVDISFRRDYFDPDQGLTTKIIRWNENNSDKSIVYDARRFRLVKFCFS
ASPSRTYIPPGCVSEMFGVILSAEKSLSRRIPVECQQTGKLVEAQPSGCG
KYLLELREQQSSKHLIRKIDMNNLRDINVSELPVLRPPKTLTVVSFVVSD
NIAVVIFSNGPCRGICATGFPENSYLAFRPHGWAVYDARHSGSFYTVFKQ
TTGFEYRAARENLTLSYDGQLLGLVPISQQSDSDCELHVFDVASGVISQM
RRVPTCCISRNAEYAHSAKTQCGCRTVIGGLGSSASISSFSRTFRKMSFA
CTFHNNIIEK*
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mRNA from alignment at ScGOVlb_24229:160886..162418+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi6849.t1 ID=Gvermi6849.t1|Name=Gvermi6849.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1533bp|location=Sequence derived from alignment at ScGOVlb_24229:160886..162418+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGATGATGGTCAGCATGTGCAAGCACCCACTTTGCCAGCAGATAGCTG
GGCTGAAATCTTACGAAGAATACCTGGCACAGATCGTCGCTTTGCTGCTC
TTAGTGGAAATGTGGTCCACGACGCATGTCGGTCGCTGCAAACAAACCAT
CTTGACCCGACAAGCTTGACATCAAAGGTTATGACAGTTGCCGAATCTGT
TGAATTTCATACTATGAGTCCCGACGGATCCCTTCTGGCAGTATTCTTTC
GAAGATATCCTATGATCCGGGTGTACGAATGTAAAACGGGGACGCAGCTT
CTCATTCTCAGGATGGGTATGATGCCTGGAGTGCTGGATATGGCTTTTTC
GCCAGACAATTCAATTTTTGCTATATATGGAGATCGGGCATATCTTATTC
ATCGCTTAACCAAATCTAAGACCAATGAGGGAGAGTGGCATGTTGACCGG
ATACGAACTATTGAACGAAAATACACTGTGAACGTCGGGATTATGGCGAA
AGAAGTGGGAATAAGCTTTTCGAGAGATAACAAACATGTCGTATTTCAGG
AAGTGTCCGTGGACCTAAGGAGAGGCAAAGCTAAAGGCTTAAAAGTCAGA
TATGAAGACGTTGATATTTCATTTCGACGGGATTATTTCGATCCGGATCA
AGGACTGACAACCAAGATTATTCGCTGGAACGAAAACAACTCCGACAAAA
GCATTGTATATGATGCCAGAAGGTTTCGATTGGTCAAGTTCTGCTTTAGT
GCAAGCCCAAGTAGGACATATATTCCCCCTGGATGCGTAAGCGAGATGTT
TGGAGTTATTTTGTCCGCAGAGAAGAGTCTTTCGCGACGTATTCCGGTAG
AATGTCAACAAACTGGAAAGCTTGTCGAAGCCCAGCCGAGTGGATGTGGA
AAATATCTGCTTGAACTTCGAGAACAGCAAAGCTCTAAACACCTCATTCG
AAAAATTGATATGAACAATTTGAGAGACATTAATGTATCAGAACTACCTG
TACTTCGACCACCCAAAACCCTAACTGTTGTCAGTTTTGTTGTGAGCGAC
AATATTGCTGTAGTCATTTTCTCGAATGGTCCTTGTCGCGGCATTTGTGC
AACAGGGTTTCCTGAGAATTCTTACTTGGCATTCAGACCTCACGGTTGGG
CCGTTTATGATGCTCGGCATTCAGGGTCCTTCTACACAGTTTTTAAACAG
ACGACTGGCTTTGAGTATCGAGCAGCCCGGGAAAATCTGACTTTGAGTTA
CGATGGTCAACTTCTTGGGCTCGTGCCTATCAGTCAACAAAGTGATTCTG
ACTGTGAATTACATGTCTTTGACGTTGCCAGTGGTGTCATTTCTCAGATG
CGAAGAGTGCCAACTTGCTGTATCTCTAGGAATGCGGAGTATGCACACAG
TGCGAAAACCCAATGTGGGTGTAGAACCGTTATCGGAGGTTTGGGCAGTA
GTGCATCGATTTCATCATTCTCCAGGACCTTCAGAAAAATGTCATTCGCA
TGTACCTTTCATAACAATATTATAGAGAAGTAA
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Coding sequence (CDS) from alignment at ScGOVlb_24229:160886..162418+

>Gvermi6849.t1 ID=Gvermi6849.t1|Name=Gvermi6849.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1533bp|location=Sequence derived from alignment at ScGOVlb_24229:160886..162418+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGATGATGGTCAGCATGTGCAAGCACCCACTTTGCCAGCAGATAGCTG
GGCTGAAATCTTACGAAGAATACCTGGCACAGATCGTCGCTTTGCTGCTC
TTAGTGGAAATGTGGTCCACGACGCATGTCGGTCGCTGCAAACAAACCAT
CTTGACCCGACAAGCTTGACATCAAAGGTTATGACAGTTGCCGAATCTGT
TGAATTTCATACTATGAGTCCCGACGGATCCCTTCTGGCAGTATTCTTTC
GAAGATATCCTATGATCCGGGTGTACGAATGTAAAACGGGGACGCAGCTT
CTCATTCTCAGGATGGGTATGATGCCTGGAGTGCTGGATATGGCTTTTTC
GCCAGACAATTCAATTTTTGCTATATATGGAGATCGGGCATATCTTATTC
ATCGCTTAACCAAATCTAAGACCAATGAGGGAGAGTGGCATGTTGACCGG
ATACGAACTATTGAACGAAAATACACTGTGAACGTCGGGATTATGGCGAA
AGAAGTGGGAATAAGCTTTTCGAGAGATAACAAACATGTCGTATTTCAGG
AAGTGTCCGTGGACCTAAGGAGAGGCAAAGCTAAAGGCTTAAAAGTCAGA
TATGAAGACGTTGATATTTCATTTCGACGGGATTATTTCGATCCGGATCA
AGGACTGACAACCAAGATTATTCGCTGGAACGAAAACAACTCCGACAAAA
GCATTGTATATGATGCCAGAAGGTTTCGATTGGTCAAGTTCTGCTTTAGT
GCAAGCCCAAGTAGGACATATATTCCCCCTGGATGCGTAAGCGAGATGTT
TGGAGTTATTTTGTCCGCAGAGAAGAGTCTTTCGCGACGTATTCCGGTAG
AATGTCAACAAACTGGAAAGCTTGTCGAAGCCCAGCCGAGTGGATGTGGA
AAATATCTGCTTGAACTTCGAGAACAGCAAAGCTCTAAACACCTCATTCG
AAAAATTGATATGAACAATTTGAGAGACATTAATGTATCAGAACTACCTG
TACTTCGACCACCCAAAACCCTAACTGTTGTCAGTTTTGTTGTGAGCGAC
AATATTGCTGTAGTCATTTTCTCGAATGGTCCTTGTCGCGGCATTTGTGC
AACAGGGTTTCCTGAGAATTCTTACTTGGCATTCAGACCTCACGGTTGGG
CCGTTTATGATGCTCGGCATTCAGGGTCCTTCTACACAGTTTTTAAACAG
ACGACTGGCTTTGAGTATCGAGCAGCCCGGGAAAATCTGACTTTGAGTTA
CGATGGTCAACTTCTTGGGCTCGTGCCTATCAGTCAACAAAGTGATTCTG
ACTGTGAATTACATGTCTTTGACGTTGCCAGTGGTGTCATTTCTCAGATG
CGAAGAGTGCCAACTTGCTGTATCTCTAGGAATGCGGAGTATGCACACAG
TGCGAAAACCCAATGTGGGTGTAGAACCGTTATCGGAGGTTTGGGCAGTA
GTGCATCGATTTCATCATTCTCCAGGACCTTCAGAAAAATGTCATTCGCA
TGTACCTTTCATAACAATATTATAGAGAAGTAA
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