Gvermi6844.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi6844.t1
Unique NameGvermi6844.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length420
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24229contigScGOVlb_24229:83699..84958 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi6844Gvermi6844Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_24229 83699..84958 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6844.t1.start1Gvermi6844.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_24229 83699..83701 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6844.t1.CDS1Gvermi6844.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24229 83699..84958 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6844.t1.exon1Gvermi6844.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24229 83699..84958 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6844.t1.stop1Gvermi6844.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_24229 84956..84958 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6844.t1Gvermi6844.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_24229 83699..84958 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi6844.t1 ID=Gvermi6844.t1|Name=Gvermi6844.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=420bp
MLLVAASFTPSVPEPQPEPHAHLEAVLTLSRMPLPGVRTVAARCPRRASH
AHRDANPSLILWMNDDGRSGGALCPVCRQHNQFLTWRVLYLSDRAAALYT
PHSRAPTPRRVQAAADAVSKSTSKSVNRRPCSTTRTRRKQQTRPVGAYVM
APNKVPHVGHIISMAYVTASLRTFDTSVATPDGQHIRLRTAGTKARQSCP
VQLLLWSDRRSKGPLIAQRVEEVAWYARQIADPSLQSEQWLPTPLVSVST
MKPSSWRDVHASNGRSVSLPAGWEPTAQQWILFDIDDLQGLEGRTSLVAS
KVVLVARRNQELSGRCLVVHTGPRGVHLWAELREVREQPKEWFRKEEVRV
WYAELGYRLLSACHRAGTFGGLVDMSSCAAGRFARRPGWRLLKDGTLFRS
RVVMHVPGPVKNRKPRMVM*
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spliced messenger RNA

>Gvermi6844.t1 ID=Gvermi6844.t1|Name=Gvermi6844.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1260bp|location=Sequence derived from alignment at ScGOVlb_24229:83699..84958+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTGCTCGTCGCCGCTTCATTTACACCCTCTGTCCCAGAGCCCCAACC
TGAGCCGCATGCACACTTGGAGGCCGTGCTGACTCTTTCTCGCATGCCGC
TACCGGGTGTTCGCACCGTTGCCGCCCGATGCCCACGTCGTGCCTCTCAC
GCTCACCGCGACGCTAACCCCTCTCTTATTCTCTGGATGAACGATGATGG
TCGCTCGGGAGGCGCGCTGTGCCCTGTTTGTCGCCAACATAATCAGTTTC
TTACCTGGCGTGTACTTTATCTTTCTGATCGTGCAGCAGCTCTCTATACT
CCTCATAGCCGCGCCCCAACCCCTCGTCGCGTGCAAGCTGCTGCTGACGC
AGTTTCGAAATCCACCTCCAAGTCCGTCAATCGGCGCCCTTGCTCAACAA
CCCGTACAAGACGCAAACAGCAAACTCGCCCAGTTGGCGCCTATGTCATG
GCCCCAAACAAAGTGCCACACGTTGGCCATATCATTTCCATGGCTTACGT
CACTGCCTCTTTGCGTACGTTTGACACAAGTGTTGCCACCCCGGACGGTC
AGCATATTCGATTGCGCACCGCTGGAACGAAGGCCAGACAAAGCTGTCCT
GTGCAACTACTTCTGTGGAGCGATCGACGCAGTAAGGGACCGCTTATTGC
GCAGCGCGTGGAAGAGGTGGCATGGTATGCGAGACAAATTGCTGATCCTT
CTTTACAGTCTGAGCAATGGTTGCCAACCCCTTTGGTCTCTGTGTCCACC
ATGAAGCCCTCTTCGTGGCGAGATGTACATGCGAGCAATGGGAGAAGCGT
GTCTTTGCCTGCGGGATGGGAGCCTACTGCTCAACAGTGGATACTGTTCG
ACATTGATGACCTTCAAGGATTGGAGGGTCGCACATCTCTGGTAGCCTCG
AAAGTAGTCCTTGTTGCCCGAAGGAATCAGGAGCTCAGTGGTCGGTGTCT
AGTCGTCCACACTGGGCCACGGGGAGTGCATTTATGGGCTGAGCTACGCG
AAGTTCGTGAGCAACCAAAGGAATGGTTCCGGAAGGAAGAAGTCCGCGTA
TGGTATGCTGAACTTGGATACAGATTGCTCAGCGCATGCCACAGGGCTGG
CACTTTTGGAGGTCTGGTTGATATGAGTTCTTGTGCTGCCGGTAGATTTG
CAAGAAGACCTGGTTGGAGGCTCTTGAAAGATGGAACTCTGTTTCGATCA
AGAGTAGTCATGCATGTTCCCGGGCCAGTGAAGAATCGCAAGCCAAGAAT
GGTGATGTAA
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protein sequence of Gvermi6844.t1

>Gvermi6844.t1 ID=Gvermi6844.t1|Name=Gvermi6844.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=420bp
MLLVAASFTPSVPEPQPEPHAHLEAVLTLSRMPLPGVRTVAARCPRRASH
AHRDANPSLILWMNDDGRSGGALCPVCRQHNQFLTWRVLYLSDRAAALYT
PHSRAPTPRRVQAAADAVSKSTSKSVNRRPCSTTRTRRKQQTRPVGAYVM
APNKVPHVGHIISMAYVTASLRTFDTSVATPDGQHIRLRTAGTKARQSCP
VQLLLWSDRRSKGPLIAQRVEEVAWYARQIADPSLQSEQWLPTPLVSVST
MKPSSWRDVHASNGRSVSLPAGWEPTAQQWILFDIDDLQGLEGRTSLVAS
KVVLVARRNQELSGRCLVVHTGPRGVHLWAELREVREQPKEWFRKEEVRV
WYAELGYRLLSACHRAGTFGGLVDMSSCAAGRFARRPGWRLLKDGTLFRS
RVVMHVPGPVKNRKPRMVM*
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mRNA from alignment at ScGOVlb_24229:83699..84958+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi6844.t1 ID=Gvermi6844.t1|Name=Gvermi6844.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1260bp|location=Sequence derived from alignment at ScGOVlb_24229:83699..84958+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTTGCTCGTCGCCGCTTCATTTACACCCTCTGTCCCAGAGCCCCAACC
TGAGCCGCATGCACACTTGGAGGCCGTGCTGACTCTTTCTCGCATGCCGC
TACCGGGTGTTCGCACCGTTGCCGCCCGATGCCCACGTCGTGCCTCTCAC
GCTCACCGCGACGCTAACCCCTCTCTTATTCTCTGGATGAACGATGATGG
TCGCTCGGGAGGCGCGCTGTGCCCTGTTTGTCGCCAACATAATCAGTTTC
TTACCTGGCGTGTACTTTATCTTTCTGATCGTGCAGCAGCTCTCTATACT
CCTCATAGCCGCGCCCCAACCCCTCGTCGCGTGCAAGCTGCTGCTGACGC
AGTTTCGAAATCCACCTCCAAGTCCGTCAATCGGCGCCCTTGCTCAACAA
CCCGTACAAGACGCAAACAGCAAACTCGCCCAGTTGGCGCCTATGTCATG
GCCCCAAACAAAGTGCCACACGTTGGCCATATCATTTCCATGGCTTACGT
CACTGCCTCTTTGCGTACGTTTGACACAAGTGTTGCCACCCCGGACGGTC
AGCATATTCGATTGCGCACCGCTGGAACGAAGGCCAGACAAAGCTGTCCT
GTGCAACTACTTCTGTGGAGCGATCGACGCAGTAAGGGACCGCTTATTGC
GCAGCGCGTGGAAGAGGTGGCATGGTATGCGAGACAAATTGCTGATCCTT
CTTTACAGTCTGAGCAATGGTTGCCAACCCCTTTGGTCTCTGTGTCCACC
ATGAAGCCCTCTTCGTGGCGAGATGTACATGCGAGCAATGGGAGAAGCGT
GTCTTTGCCTGCGGGATGGGAGCCTACTGCTCAACAGTGGATACTGTTCG
ACATTGATGACCTTCAAGGATTGGAGGGTCGCACATCTCTGGTAGCCTCG
AAAGTAGTCCTTGTTGCCCGAAGGAATCAGGAGCTCAGTGGTCGGTGTCT
AGTCGTCCACACTGGGCCACGGGGAGTGCATTTATGGGCTGAGCTACGCG
AAGTTCGTGAGCAACCAAAGGAATGGTTCCGGAAGGAAGAAGTCCGCGTA
TGGTATGCTGAACTTGGATACAGATTGCTCAGCGCATGCCACAGGGCTGG
CACTTTTGGAGGTCTGGTTGATATGAGTTCTTGTGCTGCCGGTAGATTTG
CAAGAAGACCTGGTTGGAGGCTCTTGAAAGATGGAACTCTGTTTCGATCA
AGAGTAGTCATGCATGTTCCCGGGCCAGTGAAGAATCGCAAGCCAAGAAT
GGTGATGTAA
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Coding sequence (CDS) from alignment at ScGOVlb_24229:83699..84958+

>Gvermi6844.t1 ID=Gvermi6844.t1|Name=Gvermi6844.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1260bp|location=Sequence derived from alignment at ScGOVlb_24229:83699..84958+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTTGCTCGTCGCCGCTTCATTTACACCCTCTGTCCCAGAGCCCCAACC
TGAGCCGCATGCACACTTGGAGGCCGTGCTGACTCTTTCTCGCATGCCGC
TACCGGGTGTTCGCACCGTTGCCGCCCGATGCCCACGTCGTGCCTCTCAC
GCTCACCGCGACGCTAACCCCTCTCTTATTCTCTGGATGAACGATGATGG
TCGCTCGGGAGGCGCGCTGTGCCCTGTTTGTCGCCAACATAATCAGTTTC
TTACCTGGCGTGTACTTTATCTTTCTGATCGTGCAGCAGCTCTCTATACT
CCTCATAGCCGCGCCCCAACCCCTCGTCGCGTGCAAGCTGCTGCTGACGC
AGTTTCGAAATCCACCTCCAAGTCCGTCAATCGGCGCCCTTGCTCAACAA
CCCGTACAAGACGCAAACAGCAAACTCGCCCAGTTGGCGCCTATGTCATG
GCCCCAAACAAAGTGCCACACGTTGGCCATATCATTTCCATGGCTTACGT
CACTGCCTCTTTGCGTACGTTTGACACAAGTGTTGCCACCCCGGACGGTC
AGCATATTCGATTGCGCACCGCTGGAACGAAGGCCAGACAAAGCTGTCCT
GTGCAACTACTTCTGTGGAGCGATCGACGCAGTAAGGGACCGCTTATTGC
GCAGCGCGTGGAAGAGGTGGCATGGTATGCGAGACAAATTGCTGATCCTT
CTTTACAGTCTGAGCAATGGTTGCCAACCCCTTTGGTCTCTGTGTCCACC
ATGAAGCCCTCTTCGTGGCGAGATGTACATGCGAGCAATGGGAGAAGCGT
GTCTTTGCCTGCGGGATGGGAGCCTACTGCTCAACAGTGGATACTGTTCG
ACATTGATGACCTTCAAGGATTGGAGGGTCGCACATCTCTGGTAGCCTCG
AAAGTAGTCCTTGTTGCCCGAAGGAATCAGGAGCTCAGTGGTCGGTGTCT
AGTCGTCCACACTGGGCCACGGGGAGTGCATTTATGGGCTGAGCTACGCG
AAGTTCGTGAGCAACCAAAGGAATGGTTCCGGAAGGAAGAAGTCCGCGTA
TGGTATGCTGAACTTGGATACAGATTGCTCAGCGCATGCCACAGGGCTGG
CACTTTTGGAGGTCTGGTTGATATGAGTTCTTGTGCTGCCGGTAGATTTG
CAAGAAGACCTGGTTGGAGGCTCTTGAAAGATGGAACTCTGTTTCGATCA
AGAGTAGTCATGCATGTTCCCGGGCCAGTGAAGAATCGCAAGCCAAGAAT
GGTGATGTAA
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