Gvermi6840.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi6840.t1
Unique NameGvermi6840.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length328
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24229contigScGOVlb_24229:36949..37932 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi6840Gvermi6840Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_24229 36949..37932 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6840.t1.stop1Gvermi6840.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_24229 36949..36951 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6840.t1.CDS1Gvermi6840.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24229 36949..37932 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6840.t1.exon1Gvermi6840.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24229 36949..37932 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6840.t1.start1Gvermi6840.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_24229 37930..37932 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6840.t1Gvermi6840.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_24229 36949..37932 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi6840.t1 ID=Gvermi6840.t1|Name=Gvermi6840.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=328bp
MNPVGSLNLATYDEGVAAISNSHLALDWLSIAYSSNAQTATPAPFSASQQ
HPAVVVQPISLQTPPLTRKQADVALVRTVRPYSAREVLAPCFRIASHFIL
GKVLGKLFVPAELGLSHLITEPCTDARFVLDMQHGSIVELRRYASSKALL
CVAYSTRRTEFLALPPLNYSRVEISYQHDVSADANVYAQPPTLPGSFMSA
PSASAVRETSSVSAQSSSQFISLLEHQQSQQQPSQHQQPQIEQTPAATIQ
SSWRNFCVNYASIFPTGALSATVTREPGPVNAAVKKESILITLNDPYALT
FSSINSPSGAALFRRQTPRRLLPRPTQ*
back to top

spliced messenger RNA

>Gvermi6840.t1 ID=Gvermi6840.t1|Name=Gvermi6840.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=984bp|location=Sequence derived from alignment at ScGOVlb_24229:36949..37932- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAACCCCGTCGGATCCCTAAACTTGGCCACTTATGATGAAGGGGTTGC
CGCTATATCCAACTCACATCTCGCTTTAGACTGGCTTTCCATCGCTTACT
CCTCTAACGCCCAAACTGCAACACCTGCTCCATTTTCAGCATCCCAGCAA
CATCCGGCTGTCGTTGTTCAACCTATTTCACTCCAAACTCCCCCGCTCAC
GCGTAAACAGGCTGATGTCGCCCTTGTGCGAACCGTCCGTCCTTATTCTG
CGAGAGAAGTCCTGGCCCCATGCTTTCGCATTGCCAGTCATTTTATTTTG
GGCAAGGTGCTTGGAAAGCTGTTTGTGCCGGCCGAACTTGGTCTTTCTCA
TCTCATTACCGAGCCGTGCACTGACGCCCGATTTGTGTTGGACATGCAGC
ACGGATCTATTGTAGAGCTCCGGCGATATGCTTCTTCCAAGGCCTTGCTT
TGTGTTGCTTACTCTACGCGTCGAACAGAGTTTCTTGCTCTTCCGCCTTT
GAATTACTCTCGGGTAGAAATCTCGTATCAGCATGATGTCAGTGCAGATG
CAAATGTTTACGCCCAGCCTCCGACGCTTCCTGGATCGTTCATGAGTGCT
CCCTCTGCGAGTGCTGTGCGGGAGACCTCTTCCGTTTCCGCTCAATCATC
ATCGCAATTCATATCCTTGCTTGAACACCAACAATCGCAACAGCAACCAT
CACAACATCAACAACCGCAAATCGAGCAAACTCCAGCAGCGACTATACAG
TCTTCATGGCGTAACTTCTGTGTCAACTATGCTTCTATTTTTCCAACCGG
AGCGCTTTCAGCTACAGTGACTCGAGAGCCAGGTCCCGTGAATGCTGCGG
TGAAGAAAGAAAGCATTCTAATCACGCTGAACGACCCCTACGCGTTGACG
TTTTCGAGTATCAATTCTCCGTCGGGGGCAGCCCTTTTCAGACGACAGAC
GCCAAGAAGACTCTTACCCAGACCAACTCAGTAA
back to top

protein sequence of Gvermi6840.t1

>Gvermi6840.t1 ID=Gvermi6840.t1|Name=Gvermi6840.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=328bp
MNPVGSLNLATYDEGVAAISNSHLALDWLSIAYSSNAQTATPAPFSASQQ
HPAVVVQPISLQTPPLTRKQADVALVRTVRPYSAREVLAPCFRIASHFIL
GKVLGKLFVPAELGLSHLITEPCTDARFVLDMQHGSIVELRRYASSKALL
CVAYSTRRTEFLALPPLNYSRVEISYQHDVSADANVYAQPPTLPGSFMSA
PSASAVRETSSVSAQSSSQFISLLEHQQSQQQPSQHQQPQIEQTPAATIQ
SSWRNFCVNYASIFPTGALSATVTREPGPVNAAVKKESILITLNDPYALT
FSSINSPSGAALFRRQTPRRLLPRPTQ*
back to top

mRNA from alignment at ScGOVlb_24229:36949..37932-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi6840.t1 ID=Gvermi6840.t1|Name=Gvermi6840.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=984bp|location=Sequence derived from alignment at ScGOVlb_24229:36949..37932- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAACCCCGTCGGATCCCTAAACTTGGCCACTTATGATGAAGGGGTTGC
CGCTATATCCAACTCACATCTCGCTTTAGACTGGCTTTCCATCGCTTACT
CCTCTAACGCCCAAACTGCAACACCTGCTCCATTTTCAGCATCCCAGCAA
CATCCGGCTGTCGTTGTTCAACCTATTTCACTCCAAACTCCCCCGCTCAC
GCGTAAACAGGCTGATGTCGCCCTTGTGCGAACCGTCCGTCCTTATTCTG
CGAGAGAAGTCCTGGCCCCATGCTTTCGCATTGCCAGTCATTTTATTTTG
GGCAAGGTGCTTGGAAAGCTGTTTGTGCCGGCCGAACTTGGTCTTTCTCA
TCTCATTACCGAGCCGTGCACTGACGCCCGATTTGTGTTGGACATGCAGC
ACGGATCTATTGTAGAGCTCCGGCGATATGCTTCTTCCAAGGCCTTGCTT
TGTGTTGCTTACTCTACGCGTCGAACAGAGTTTCTTGCTCTTCCGCCTTT
GAATTACTCTCGGGTAGAAATCTCGTATCAGCATGATGTCAGTGCAGATG
CAAATGTTTACGCCCAGCCTCCGACGCTTCCTGGATCGTTCATGAGTGCT
CCCTCTGCGAGTGCTGTGCGGGAGACCTCTTCCGTTTCCGCTCAATCATC
ATCGCAATTCATATCCTTGCTTGAACACCAACAATCGCAACAGCAACCAT
CACAACATCAACAACCGCAAATCGAGCAAACTCCAGCAGCGACTATACAG
TCTTCATGGCGTAACTTCTGTGTCAACTATGCTTCTATTTTTCCAACCGG
AGCGCTTTCAGCTACAGTGACTCGAGAGCCAGGTCCCGTGAATGCTGCGG
TGAAGAAAGAAAGCATTCTAATCACGCTGAACGACCCCTACGCGTTGACG
TTTTCGAGTATCAATTCTCCGTCGGGGGCAGCCCTTTTCAGACGACAGAC
GCCAAGAAGACTCTTACCCAGACCAACTCAGTAA
back to top

Coding sequence (CDS) from alignment at ScGOVlb_24229:36949..37932-

>Gvermi6840.t1 ID=Gvermi6840.t1|Name=Gvermi6840.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=984bp|location=Sequence derived from alignment at ScGOVlb_24229:36949..37932- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAACCCCGTCGGATCCCTAAACTTGGCCACTTATGATGAAGGGGTTGC
CGCTATATCCAACTCACATCTCGCTTTAGACTGGCTTTCCATCGCTTACT
CCTCTAACGCCCAAACTGCAACACCTGCTCCATTTTCAGCATCCCAGCAA
CATCCGGCTGTCGTTGTTCAACCTATTTCACTCCAAACTCCCCCGCTCAC
GCGTAAACAGGCTGATGTCGCCCTTGTGCGAACCGTCCGTCCTTATTCTG
CGAGAGAAGTCCTGGCCCCATGCTTTCGCATTGCCAGTCATTTTATTTTG
GGCAAGGTGCTTGGAAAGCTGTTTGTGCCGGCCGAACTTGGTCTTTCTCA
TCTCATTACCGAGCCGTGCACTGACGCCCGATTTGTGTTGGACATGCAGC
ACGGATCTATTGTAGAGCTCCGGCGATATGCTTCTTCCAAGGCCTTGCTT
TGTGTTGCTTACTCTACGCGTCGAACAGAGTTTCTTGCTCTTCCGCCTTT
GAATTACTCTCGGGTAGAAATCTCGTATCAGCATGATGTCAGTGCAGATG
CAAATGTTTACGCCCAGCCTCCGACGCTTCCTGGATCGTTCATGAGTGCT
CCCTCTGCGAGTGCTGTGCGGGAGACCTCTTCCGTTTCCGCTCAATCATC
ATCGCAATTCATATCCTTGCTTGAACACCAACAATCGCAACAGCAACCAT
CACAACATCAACAACCGCAAATCGAGCAAACTCCAGCAGCGACTATACAG
TCTTCATGGCGTAACTTCTGTGTCAACTATGCTTCTATTTTTCCAACCGG
AGCGCTTTCAGCTACAGTGACTCGAGAGCCAGGTCCCGTGAATGCTGCGG
TGAAGAAAGAAAGCATTCTAATCACGCTGAACGACCCCTACGCGTTGACG
TTTTCGAGTATCAATTCTCCGTCGGGGGCAGCCCTTTTCAGACGACAGAC
GCCAAGAAGACTCTTACCCAGACCAACTCAGTAA
back to top