Gvermi6839.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi6839.t1
Unique NameGvermi6839.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length375
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24229contigScGOVlb_24229:6997..8585 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005707223.1
PFAMsArf,RrnaAD
Max annot lvl2759|Eukaryota
Evalue2.37e-37
EggNOG OGsCOG0030@1|root,KOG0821@2759|Eukaryota
DescriptionrRNA (adenine-N6,N6-)-dimethyltransferase activity
COG categoryJ
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi6839Gvermi6839Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_24229 6997..8585 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6839.t1Gvermi6839.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_24229 6997..8585 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6839.t1.stop1Gvermi6839.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_24229 6997..6999 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6839.t1.CDS1Gvermi6839.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24229 6997..7307 -
Gvermi6839.t1.CDS2Gvermi6839.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24229 7395..7797 -
Gvermi6839.t1.CDS3Gvermi6839.t1.CDS3Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24229 8175..8585 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6839.t1.exon1Gvermi6839.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24229 6997..7307 -
Gvermi6839.t1.exon2Gvermi6839.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24229 7395..7797 -
Gvermi6839.t1.exon3Gvermi6839.t1.exon3Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24229 8175..8585 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6839.t1.intron1Gvermi6839.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_24229 7308..7394 -
Gvermi6839.t1.intron2Gvermi6839.t1.intron2Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_24229 7798..8174 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6839.t1.start1Gvermi6839.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_24229 8583..8585 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi6839.t1 ID=Gvermi6839.t1|Name=Gvermi6839.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=375bp
MVNTPPSHPAEANATDVAQRIHKLTPKSLHTVRSLLEKVEQPVNMADLEE
LTLRVDSVPPRLEEMNMNIKKIMEGMEEVKNKLKILKKEMVMVMKKITSE
EGRKQDMKQFLGAHQFHRRKRSRGDTPYASYLSSEMDQIIDRIITSFRNA
VQQTDPLPTVVEVGPGLGALTDRLIEHYPNMHAVEIDKRAVQHLHSRHAH
LNLHHADVLQLDWNAFPTQLCSSLAVIGNLLYDIVSQILFSLLEAPDNAI
FTALVTMQKEVAQRVTAKPNCLSEVTSAMVQLRFTPHPRFDSTNVPMNRV
LRTVVKPAFNQRRKRLRNALKTICNGRELPNGWDLKRPEELKPIQFLHIA
HFLYSDGLKKDRGRKENAWHSVWR*
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spliced messenger RNA

>Gvermi6839.t1 ID=Gvermi6839.t1|Name=Gvermi6839.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1125bp|location=Sequence derived from alignment at ScGOVlb_24229:6997..8585- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTGAACACACCCCCATCTCATCCCGCAGAAGCAAACGCCACCGATGT
GGCGCAACGCATTCATAAGTTGACGCCGAAATCCCTGCACACGGTTCGCT
CTTTGCTGGAAAAGGTCGAACAGCCGGTGAACATGGCTGATTTGGAAGAG
CTCACGCTACGCGTTGACTCGGTTCCTCCAAGGCTTGAGGAGATGAATAT
GAATATCAAGAAGATCATGGAAGGGATGGAGGAAGTGAAAAATAAACTAA
AGATTTTAAAGAAAGAGATGGTAATGGTTATGAAGAAGATCACTTCTGAG
GAAGGTCGTAAACAGGATATGAAGCAGTTCTTGGGCGCCCATCAGTTCCA
CCGCCGTAAACGCAGCCGCGGCGATACTCCGTACGCTTCATATCTTTCGT
CGGAAATGGACCAAATCATCGATCGTATCATCACGTCGTTTCGAAATGCT
GTGCAACAGACGGACCCATTGCCAACTGTCGTTGAGGTCGGTCCTGGTTT
GGGCGCGCTCACGGATAGATTGATAGAACATTATCCCAATATGCATGCTG
TTGAGATCGATAAAAGGGCTGTTCAACATCTTCACTCCCGACATGCGCAT
TTGAATCTTCATCACGCCGACGTGTTGCAGCTTGATTGGAACGCATTTCC
CACGCAGTTATGTTCTTCTCTCGCTGTCATAGGCAATCTCCTGTACGATA
TAGTGTCACAGATTTTGTTCTCTCTGTTGGAAGCCCCGGACAACGCAATA
TTCACCGCGTTGGTCACGATGCAAAAAGAAGTTGCTCAACGTGTTACCGC
AAAGCCAAATTGTCTATCTGAGGTCACGTCCGCAATGGTTCAACTACGAT
TCACCCCTCATCCGCGATTTGACAGCACCAATGTGCCAATGAATCGAGTG
CTTCGCACTGTCGTAAAACCTGCGTTCAATCAGAGACGTAAACGTCTTCG
AAATGCTTTGAAGACCATTTGCAACGGCAGAGAACTGCCAAATGGATGGG
ACTTGAAGAGGCCGGAGGAGTTGAAACCGATACAGTTCTTACATATTGCC
CACTTCCTGTACTCAGACGGTCTGAAAAAAGACCGAGGTAGGAAGGAAAA
CGCCTGGCATTCAGTTTGGAGATAG
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protein sequence of Gvermi6839.t1

>Gvermi6839.t1 ID=Gvermi6839.t1|Name=Gvermi6839.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=375bp
MVNTPPSHPAEANATDVAQRIHKLTPKSLHTVRSLLEKVEQPVNMADLEE
LTLRVDSVPPRLEEMNMNIKKIMEGMEEVKNKLKILKKEMVMVMKKITSE
EGRKQDMKQFLGAHQFHRRKRSRGDTPYASYLSSEMDQIIDRIITSFRNA
VQQTDPLPTVVEVGPGLGALTDRLIEHYPNMHAVEIDKRAVQHLHSRHAH
LNLHHADVLQLDWNAFPTQLCSSLAVIGNLLYDIVSQILFSLLEAPDNAI
FTALVTMQKEVAQRVTAKPNCLSEVTSAMVQLRFTPHPRFDSTNVPMNRV
LRTVVKPAFNQRRKRLRNALKTICNGRELPNGWDLKRPEELKPIQFLHIA
HFLYSDGLKKDRGRKENAWHSVWR*
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mRNA from alignment at ScGOVlb_24229:6997..8585-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi6839.t1 ID=Gvermi6839.t1|Name=Gvermi6839.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1589bp|location=Sequence derived from alignment at ScGOVlb_24229:6997..8585- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGTGAACACACCCCCATCTCATCCCGCAGAAGCAAACGCCACCGATGT
GGCGCAACGCATTCATAAGTTGACGCCGAAATCCCTGCACACGGTTCGCT
CTTTGCTGGAAAAGGTCGAACAGCCGGTGAACATGGCTGATTTGGAAGAG
CTCACGCTACGCGTTGACTCGGTTCCTCCAAGGCTTGAGGAGATGAATAT
GAATATCAAGAAGATCATGGAAGGGATGGAGGAAGTGAAAAATAAACTAA
AGATTTTAAAGAAAGAGATGGTAATGGTTATGAAGAAGATCACTTCTGAG
GAAGGTCGTAAACAGGATATGAAGCAGTTCTTGGGCGCCCATCAGTTCCA
CCGCCGTAAACGCAGCCGCGGCGATACTCCGTACGCTTCATATCTTTCGT
CGGAAATGGACGTAACTGCCGAAACCGCTTGTTACTTTTGCGGTGTTGGT
GGAACGCCGTGTCGCGTTCACCTTAGGCGTTAGCGCCGATAAGTAAATTG
CCGCCACGCCCTTCAGCAGCTACACCATTTCGTCCACGCCGCTCGCGCAC
GCAGATATTTTAGGTTTACAGATTTCCTGTCATGCCCGCGCGCCATTTGC
CCAGCGCCTTCGCGCCGCCCTCAGCGCTGCGTCTTTTCTCATACCGTCCC
ATTCTTCCAACCACTTCTCGCCTCAATCCACCACGCTGTACCCTATCCTC
ACCGCCGCCATTCTCGTTCACGCCGCCACAGCCGCCACGTTCAATTCACC
CGAAGTAGTCACTCAGTCGAAACGTCTTGCGTGACAAGCAAATCATCGAT
CGTATCATCACGTCGTTTCGAAATGCTGTGCAACAGACGGACCCATTGCC
AACTGTCGTTGAGGTCGGTCCTGGTTTGGGCGCGCTCACGGATAGATTGA
TAGAACATTATCCCAATATGCATGCTGTTGAGATCGATAAAAGGGCTGTT
CAACATCTTCACTCCCGACATGCGCATTTGAATCTTCATCACGCCGACGT
GTTGCAGCTTGATTGGAACGCATTTCCCACGCAGTTATGTTCTTCTCTCG
CTGTCATAGGCAATCTCCTGTACGATATAGTGTCACAGATTTTGTTCTCT
CTGTTGGAAGCCCCGGACAACGCAATATTCACCGCGTTGGTCACGATGCA
AAAAGAAGTTGCTCAACGTGTTACCGCAAAGCCAAATTGTCGTTCGTATG
GCATTCTATCTGTTATATCCCAACTGTACGCACAGCCTTAAATTCGTTTC
TCTGTTCCGAACACCGCATTTTTCCCAGTATCTGAGGTCACGTCCGCAAT
GGTTCAACTACGATTCACCCCTCATCCGCGATTTGACAGCACCAATGTGC
CAATGAATCGAGTGCTTCGCACTGTCGTAAAACCTGCGTTCAATCAGAGA
CGTAAACGTCTTCGAAATGCTTTGAAGACCATTTGCAACGGCAGAGAACT
GCCAAATGGATGGGACTTGAAGAGGCCGGAGGAGTTGAAACCGATACAGT
TCTTACATATTGCCCACTTCCTGTACTCAGACGGTCTGAAAAAAGACCGA
GGTAGGAAGGAAAACGCCTGGCATTCAGTTTGGAGATAG
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Coding sequence (CDS) from alignment at ScGOVlb_24229:6997..8585-

>Gvermi6839.t1 ID=Gvermi6839.t1|Name=Gvermi6839.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1125bp|location=Sequence derived from alignment at ScGOVlb_24229:6997..8585- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGTGAACACACCCCCATCTCATCCCGCAGAAGCAAACGCCACCGATGT
GGCGCAACGCATTCATAAGTTGACGCCGAAATCCCTGCACACGGTTCGCT
CTTTGCTGGAAAAGGTCGAACAGCCGGTGAACATGGCTGATTTGGAAGAG
CTCACGCTACGCGTTGACTCGGTTCCTCCAAGGCTTGAGGAGATGAATAT
GAATATCAAGAAGATCATGGAAGGGATGGAGGAAGTGAAAAATAAACTAA
AGATTTTAAAGAAAGAGATGGTAATGGTTATGAAGAAGATCACTTCTGAG
GAAGGTCGTAAACAGGATATGAAGCAGTTCTTGGGCGCCCATCAGTTCCA
CCGCCGTAAACGCAGCCGCGGCGATACTCCGTACGCTTCATATCTTTCGT
CGGAAATGGACCAAATCATCGATCGTATCATCACGTCGTTTCGAAATGCT
GTGCAACAGACGGACCCATTGCCAACTGTCGTTGAGGTCGGTCCTGGTTT
GGGCGCGCTCACGGATAGATTGATAGAACATTATCCCAATATGCATGCTG
TTGAGATCGATAAAAGGGCTGTTCAACATCTTCACTCCCGACATGCGCAT
TTGAATCTTCATCACGCCGACGTGTTGCAGCTTGATTGGAACGCATTTCC
CACGCAGTTATGTTCTTCTCTCGCTGTCATAGGCAATCTCCTGTACGATA
TAGTGTCACAGATTTTGTTCTCTCTGTTGGAAGCCCCGGACAACGCAATA
TTCACCGCGTTGGTCACGATGCAAAAAGAAGTTGCTCAACGTGTTACCGC
AAAGCCAAATTGTCTATCTGAGGTCACGTCCGCAATGGTTCAACTACGAT
TCACCCCTCATCCGCGATTTGACAGCACCAATGTGCCAATGAATCGAGTG
CTTCGCACTGTCGTAAAACCTGCGTTCAATCAGAGACGTAAACGTCTTCG
AAATGCTTTGAAGACCATTTGCAACGGCAGAGAACTGCCAAATGGATGGG
ACTTGAAGAGGCCGGAGGAGTTGAAACCGATACAGTTCTTACATATTGCC
CACTTCCTGTACTCAGACGGTCTGAAAAAAGACCGAGGTAGGAAGGAAAA
CGCCTGGCATTCAGTTTGGAGATAG
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