Gvermi6822.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi6822.t1
Unique NameGvermi6822.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length305
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_88contigScGOVlb_88:2427364..2428278 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog192875.XP_004364571.1
PFAMsRNA_ligase
Max annot lvl33154|Opisthokonta
Evalue1.56e-51
EggNOG OGsCOG1423@1|root,2S0RG@2759|Eukaryota,39Q9S@33154|Opisthokonta
DescriptionRNA ligase
COG categoryL
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi6822Gvermi6822Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_88 2427364..2428278 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6822.t1.start1Gvermi6822.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_88 2427364..2427366 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6822.t1.CDS1Gvermi6822.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_88 2427364..2428278 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6822.t1.exon1Gvermi6822.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_88 2427364..2428278 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6822.t1.stop1Gvermi6822.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_88 2428276..2428278 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6822.t1Gvermi6822.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_88 2427364..2428278 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi6822.t1 ID=Gvermi6822.t1|Name=Gvermi6822.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=305bp
MENEELKGNNEHINRKLVKPVGSEGQSSGSVEIRQENYVRRVRTNSVKRH
FFVETAQAHLEPPLRLPGFVKFPRTRHILDLGGSVAGDDIVMDNADLKQM
IKSLNTARREKDMKVTVEEKVDGANLGFSICPESKRILVQNRSHYVNTKS
HSQFKLVDFFTHTYEKDLRKVLRDGERVLYGEWMYAKHSILYSKLPSVFL
AFDLLDRTENRFLSRTAFRKEMENTEICTVEEVRLPSHITVSTIKELALN
CKSHYYEGRAEGLYFRIDGEKWLVDRAKIVRPDFIVGNEHWNRRPPERNR
FESI*
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spliced messenger RNA

>Gvermi6822.t1 ID=Gvermi6822.t1|Name=Gvermi6822.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=915bp|location=Sequence derived from alignment at ScGOVlb_88:2427364..2428278+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAAAATGAAGAACTCAAAGGAAACAACGAGCACATCAATAGAAAACT
CGTGAAACCCGTGGGTTCGGAAGGTCAAAGCAGTGGGTCTGTGGAAATAA
GACAAGAAAACTATGTAAGAAGAGTACGAACCAATTCCGTGAAACGTCAC
TTCTTCGTCGAAACCGCTCAGGCACATTTAGAACCGCCATTACGTTTACC
TGGTTTCGTAAAGTTTCCACGAACGAGACATATTTTGGATCTTGGAGGTA
GCGTTGCTGGTGACGATATTGTCATGGACAATGCGGACTTAAAACAGATG
ATAAAATCATTGAATACAGCACGCCGTGAGAAAGATATGAAAGTAACTGT
AGAAGAAAAAGTGGACGGGGCTAACCTGGGATTCAGTATCTGTCCCGAAA
GCAAAAGGATTCTGGTCCAGAACAGGTCACACTACGTGAATACGAAGAGT
CATTCTCAATTCAAACTCGTTGACTTTTTTACACATACTTACGAAAAAGA
TCTTAGGAAAGTTCTTCGTGATGGCGAGCGTGTACTATACGGGGAATGGA
TGTATGCGAAGCACAGCATCCTGTATTCGAAACTCCCAAGTGTGTTTCTT
GCTTTTGATTTGCTGGACAGGACTGAGAATCGATTTCTAAGCCGCACAGC
ATTCCGAAAGGAAATGGAAAACACAGAAATCTGTACGGTGGAAGAAGTGC
GTCTTCCAAGTCATATTACAGTTTCCACAATCAAAGAACTTGCATTAAAT
TGTAAAAGCCACTACTACGAAGGACGAGCAGAAGGGCTCTATTTTCGAAT
TGATGGAGAAAAGTGGCTTGTGGACAGGGCGAAAATTGTGAGACCTGACT
TCATTGTAGGCAACGAGCATTGGAATAGACGGCCGCCTGAACGGAACAGG
TTCGAATCCATATGA
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protein sequence of Gvermi6822.t1

>Gvermi6822.t1 ID=Gvermi6822.t1|Name=Gvermi6822.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=305bp
MENEELKGNNEHINRKLVKPVGSEGQSSGSVEIRQENYVRRVRTNSVKRH
FFVETAQAHLEPPLRLPGFVKFPRTRHILDLGGSVAGDDIVMDNADLKQM
IKSLNTARREKDMKVTVEEKVDGANLGFSICPESKRILVQNRSHYVNTKS
HSQFKLVDFFTHTYEKDLRKVLRDGERVLYGEWMYAKHSILYSKLPSVFL
AFDLLDRTENRFLSRTAFRKEMENTEICTVEEVRLPSHITVSTIKELALN
CKSHYYEGRAEGLYFRIDGEKWLVDRAKIVRPDFIVGNEHWNRRPPERNR
FESI*
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mRNA from alignment at ScGOVlb_88:2427364..2428278+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi6822.t1 ID=Gvermi6822.t1|Name=Gvermi6822.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=915bp|location=Sequence derived from alignment at ScGOVlb_88:2427364..2428278+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGAAAATGAAGAACTCAAAGGAAACAACGAGCACATCAATAGAAAACT
CGTGAAACCCGTGGGTTCGGAAGGTCAAAGCAGTGGGTCTGTGGAAATAA
GACAAGAAAACTATGTAAGAAGAGTACGAACCAATTCCGTGAAACGTCAC
TTCTTCGTCGAAACCGCTCAGGCACATTTAGAACCGCCATTACGTTTACC
TGGTTTCGTAAAGTTTCCACGAACGAGACATATTTTGGATCTTGGAGGTA
GCGTTGCTGGTGACGATATTGTCATGGACAATGCGGACTTAAAACAGATG
ATAAAATCATTGAATACAGCACGCCGTGAGAAAGATATGAAAGTAACTGT
AGAAGAAAAAGTGGACGGGGCTAACCTGGGATTCAGTATCTGTCCCGAAA
GCAAAAGGATTCTGGTCCAGAACAGGTCACACTACGTGAATACGAAGAGT
CATTCTCAATTCAAACTCGTTGACTTTTTTACACATACTTACGAAAAAGA
TCTTAGGAAAGTTCTTCGTGATGGCGAGCGTGTACTATACGGGGAATGGA
TGTATGCGAAGCACAGCATCCTGTATTCGAAACTCCCAAGTGTGTTTCTT
GCTTTTGATTTGCTGGACAGGACTGAGAATCGATTTCTAAGCCGCACAGC
ATTCCGAAAGGAAATGGAAAACACAGAAATCTGTACGGTGGAAGAAGTGC
GTCTTCCAAGTCATATTACAGTTTCCACAATCAAAGAACTTGCATTAAAT
TGTAAAAGCCACTACTACGAAGGACGAGCAGAAGGGCTCTATTTTCGAAT
TGATGGAGAAAAGTGGCTTGTGGACAGGGCGAAAATTGTGAGACCTGACT
TCATTGTAGGCAACGAGCATTGGAATAGACGGCCGCCTGAACGGAACAGG
TTCGAATCCATATGA
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Coding sequence (CDS) from alignment at ScGOVlb_88:2427364..2428278+

>Gvermi6822.t1 ID=Gvermi6822.t1|Name=Gvermi6822.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=915bp|location=Sequence derived from alignment at ScGOVlb_88:2427364..2428278+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGAAAATGAAGAACTCAAAGGAAACAACGAGCACATCAATAGAAAACT
CGTGAAACCCGTGGGTTCGGAAGGTCAAAGCAGTGGGTCTGTGGAAATAA
GACAAGAAAACTATGTAAGAAGAGTACGAACCAATTCCGTGAAACGTCAC
TTCTTCGTCGAAACCGCTCAGGCACATTTAGAACCGCCATTACGTTTACC
TGGTTTCGTAAAGTTTCCACGAACGAGACATATTTTGGATCTTGGAGGTA
GCGTTGCTGGTGACGATATTGTCATGGACAATGCGGACTTAAAACAGATG
ATAAAATCATTGAATACAGCACGCCGTGAGAAAGATATGAAAGTAACTGT
AGAAGAAAAAGTGGACGGGGCTAACCTGGGATTCAGTATCTGTCCCGAAA
GCAAAAGGATTCTGGTCCAGAACAGGTCACACTACGTGAATACGAAGAGT
CATTCTCAATTCAAACTCGTTGACTTTTTTACACATACTTACGAAAAAGA
TCTTAGGAAAGTTCTTCGTGATGGCGAGCGTGTACTATACGGGGAATGGA
TGTATGCGAAGCACAGCATCCTGTATTCGAAACTCCCAAGTGTGTTTCTT
GCTTTTGATTTGCTGGACAGGACTGAGAATCGATTTCTAAGCCGCACAGC
ATTCCGAAAGGAAATGGAAAACACAGAAATCTGTACGGTGGAAGAAGTGC
GTCTTCCAAGTCATATTACAGTTTCCACAATCAAAGAACTTGCATTAAAT
TGTAAAAGCCACTACTACGAAGGACGAGCAGAAGGGCTCTATTTTCGAAT
TGATGGAGAAAAGTGGCTTGTGGACAGGGCGAAAATTGTGAGACCTGACT
TCATTGTAGGCAACGAGCATTGGAATAGACGGCCGCCTGAACGGAACAGG
TTCGAATCCATATGA
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