Gvermi6821.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi6821.t1
Unique NameGvermi6821.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length308
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_88contigScGOVlb_88:2424901..2425889 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi6821Gvermi6821Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_88 2424901..2425889 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6821.t1Gvermi6821.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_88 2424901..2425889 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6821.t1.start1Gvermi6821.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_88 2424901..2424903 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6821.t1.CDS1Gvermi6821.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_88 2424901..2425782 +
Gvermi6821.t1.CDS2Gvermi6821.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_88 2425848..2425889 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6821.t1.exon1Gvermi6821.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_88 2424901..2425782 +
Gvermi6821.t1.exon2Gvermi6821.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_88 2425848..2425889 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6821.t1.intron1Gvermi6821.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_88 2425783..2425847 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6821.t1.stop1Gvermi6821.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_88 2425887..2425889 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi6821.t1 ID=Gvermi6821.t1|Name=Gvermi6821.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=308bp
MPGQQQTAVRHHHHGHQYWQTQTGISSSDFYSVPRMASRTPKLSFSLSGG
AVIATIPSSDPYHGQHTALDTAPQHPESTTSISITIASASECDSLGPRYT
SQLLRYLSESPSFLPMFLTIPRKQGVILFWPHAQYARARVGLQRVQFTVS
ANTSRSAMESRQQSSHFSLNVDCFLQLARAAATFSPQYASVVDDVYQAAD
LVEQTYPSPSVHVRRQIAIIRSVAVARLDSRDHRVLSQANALVALDPTSS
AAYLHRAQSLYAAGQFWFAVLDVWYAVLKQGDQQFNKARAVSVLHMPYSS
GELSSSI*
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spliced messenger RNA

>Gvermi6821.t1 ID=Gvermi6821.t1|Name=Gvermi6821.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=924bp|location=Sequence derived from alignment at ScGOVlb_88:2424901..2425889+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCTGGTCAACAGCAAACAGCTGTTCGACATCACCACCATGGCCACCA
GTACTGGCAAACGCAGACGGGAATCTCCAGCTCCGACTTCTACAGCGTGC
CTCGCATGGCTTCACGAACGCCAAAACTCAGCTTCTCGCTCTCGGGCGGT
GCCGTGATCGCTACCATTCCATCCTCTGACCCGTATCATGGTCAGCATAC
CGCATTAGACACCGCTCCCCAACATCCCGAATCCACTACTTCAATCTCCA
TTACCATTGCCTCTGCCTCAGAATGTGATTCCTTGGGTCCGCGCTACACA
TCTCAACTTCTGCGCTACCTTTCCGAATCGCCATCATTTCTTCCCATGTT
TCTCACAATTCCCCGCAAGCAAGGCGTCATATTGTTCTGGCCTCACGCGC
AATATGCTCGCGCAAGAGTTGGACTGCAGCGCGTGCAGTTTACTGTGTCA
GCTAATACTTCTCGCAGCGCGATGGAATCACGACAGCAATCGTCCCATTT
TTCTTTGAATGTCGACTGCTTCTTGCAACTGGCAAGAGCGGCTGCCACAT
TTTCGCCCCAATACGCGTCTGTGGTCGACGATGTATACCAGGCCGCTGAT
TTGGTTGAACAAACATACCCTTCTCCTTCTGTTCATGTCCGACGCCAGAT
TGCCATCATCCGCTCCGTCGCTGTCGCCCGCTTGGACTCACGCGACCACC
GCGTTTTGTCACAAGCAAATGCTCTCGTAGCACTTGACCCCACCAGTTCG
GCTGCATATTTGCATCGCGCCCAATCTTTGTATGCGGCTGGCCAGTTCTG
GTTTGCAGTTTTGGATGTGTGGTATGCTGTCCTCAAACAAGGCGATCAGC
AATTCAACAAAGCTCGAGCAGTTTCGGTTTTGCACATGCCGTACTCTTCA
GGAGAGCTTTCCAGCTCCATATGA
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protein sequence of Gvermi6821.t1

>Gvermi6821.t1 ID=Gvermi6821.t1|Name=Gvermi6821.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=308bp
MPGQQQTAVRHHHHGHQYWQTQTGISSSDFYSVPRMASRTPKLSFSLSGG
AVIATIPSSDPYHGQHTALDTAPQHPESTTSISITIASASECDSLGPRYT
SQLLRYLSESPSFLPMFLTIPRKQGVILFWPHAQYARARVGLQRVQFTVS
ANTSRSAMESRQQSSHFSLNVDCFLQLARAAATFSPQYASVVDDVYQAAD
LVEQTYPSPSVHVRRQIAIIRSVAVARLDSRDHRVLSQANALVALDPTSS
AAYLHRAQSLYAAGQFWFAVLDVWYAVLKQGDQQFNKARAVSVLHMPYSS
GELSSSI*
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mRNA from alignment at ScGOVlb_88:2424901..2425889+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi6821.t1 ID=Gvermi6821.t1|Name=Gvermi6821.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=989bp|location=Sequence derived from alignment at ScGOVlb_88:2424901..2425889+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCCTGGTCAACAGCAAACAGCTGTTCGACATCACCACCATGGCCACCA
GTACTGGCAAACGCAGACGGGAATCTCCAGCTCCGACTTCTACAGCGTGC
CTCGCATGGCTTCACGAACGCCAAAACTCAGCTTCTCGCTCTCGGGCGGT
GCCGTGATCGCTACCATTCCATCCTCTGACCCGTATCATGGTCAGCATAC
CGCATTAGACACCGCTCCCCAACATCCCGAATCCACTACTTCAATCTCCA
TTACCATTGCCTCTGCCTCAGAATGTGATTCCTTGGGTCCGCGCTACACA
TCTCAACTTCTGCGCTACCTTTCCGAATCGCCATCATTTCTTCCCATGTT
TCTCACAATTCCCCGCAAGCAAGGCGTCATATTGTTCTGGCCTCACGCGC
AATATGCTCGCGCAAGAGTTGGACTGCAGCGCGTGCAGTTTACTGTGTCA
GCTAATACTTCTCGCAGCGCGATGGAATCACGACAGCAATCGTCCCATTT
TTCTTTGAATGTCGACTGCTTCTTGCAACTGGCAAGAGCGGCTGCCACAT
TTTCGCCCCAATACGCGTCTGTGGTCGACGATGTATACCAGGCCGCTGAT
TTGGTTGAACAAACATACCCTTCTCCTTCTGTTCATGTCCGACGCCAGAT
TGCCATCATCCGCTCCGTCGCTGTCGCCCGCTTGGACTCACGCGACCACC
GCGTTTTGTCACAAGCAAATGCTCTCGTAGCACTTGACCCCACCAGTTCG
GCTGCATATTTGCATCGCGCCCAATCTTTGTATGCGGCTGGCCAGTTCTG
GTTTGCAGTTTTGGATGTGTGGTATGCTGTCCTCAAACAAGGCGATCAGC
AATTCAACAAAGCTCGAGCAGTTTCGGTTTTGGTGCGTTGTTTGTCCCAT
CTTCCACATGTTGGGCTTGATATCATTTTTGTTTCACAAAAATGCAGCAC
ATGCCGTACTCTTCAGGAGAGCTTTCCAGCTCCATATGA
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Coding sequence (CDS) from alignment at ScGOVlb_88:2424901..2425889+

>Gvermi6821.t1 ID=Gvermi6821.t1|Name=Gvermi6821.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=924bp|location=Sequence derived from alignment at ScGOVlb_88:2424901..2425889+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCCTGGTCAACAGCAAACAGCTGTTCGACATCACCACCATGGCCACCA
GTACTGGCAAACGCAGACGGGAATCTCCAGCTCCGACTTCTACAGCGTGC
CTCGCATGGCTTCACGAACGCCAAAACTCAGCTTCTCGCTCTCGGGCGGT
GCCGTGATCGCTACCATTCCATCCTCTGACCCGTATCATGGTCAGCATAC
CGCATTAGACACCGCTCCCCAACATCCCGAATCCACTACTTCAATCTCCA
TTACCATTGCCTCTGCCTCAGAATGTGATTCCTTGGGTCCGCGCTACACA
TCTCAACTTCTGCGCTACCTTTCCGAATCGCCATCATTTCTTCCCATGTT
TCTCACAATTCCCCGCAAGCAAGGCGTCATATTGTTCTGGCCTCACGCGC
AATATGCTCGCGCAAGAGTTGGACTGCAGCGCGTGCAGTTTACTGTGTCA
GCTAATACTTCTCGCAGCGCGATGGAATCACGACAGCAATCGTCCCATTT
TTCTTTGAATGTCGACTGCTTCTTGCAACTGGCAAGAGCGGCTGCCACAT
TTTCGCCCCAATACGCGTCTGTGGTCGACGATGTATACCAGGCCGCTGAT
TTGGTTGAACAAACATACCCTTCTCCTTCTGTTCATGTCCGACGCCAGAT
TGCCATCATCCGCTCCGTCGCTGTCGCCCGCTTGGACTCACGCGACCACC
GCGTTTTGTCACAAGCAAATGCTCTCGTAGCACTTGACCCCACCAGTTCG
GCTGCATATTTGCATCGCGCCCAATCTTTGTATGCGGCTGGCCAGTTCTG
GTTTGCAGTTTTGGATGTGTGGTATGCTGTCCTCAAACAAGGCGATCAGC
AATTCAACAAAGCTCGAGCAGTTTCGGTTTTGCACATGCCGTACTCTTCA
GGAGAGCTTTCCAGCTCCATATGA
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